Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0007780

Physical Location & Seq

Genomic Coordinates Forward (+)

13118517 .. 13123536

Gene Structure 5020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1088500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGAACTCTGCGACTTTCAGCTCCACTTTTCTCCGAACCGGCTGCCTCCGCAAGGAATTGCAGGACGGGGTGAACAATTTGAAGGCCGATACGCGCAATGCAGGGAAGGTGTTTGTTAAATGTTACGTGAAAACGAAAACCCAGAAAGCAGAAAAGGAAGTTCGGCTTGGTGTTCTTGGAGCCAGTGGTTACACTGGTTCTGAGATTGTTCGGCTTTTGGCAAACCATCCTCACTTTGGCATTACCTTGATGACGGCTGATAGAAAAGCTGGACAGTCAATAGGGTCGGTGTTCCCGCATCTAGTTTCCCAAGATCTACCAAAAATGGTTGCTATAAAGGATGCTGATTTTTCTGATGTGGATGCTGTTTTTTGTTGTTTGCCACATGGAACCACACAGGAAATTATCAAAGGCCTTCCCAAGAGTTTAAAGATTGTTGATCTGTCTGCTGACTTCCGTCTACGAGACATATCTGAGTATGAAGAATGGTATGGTCAGGCACATAGAGCACCAGAGTTGCAGAAAGAAGTTGTATATGGTTTGACAGAGATTTTGAGGGAGGAGATAAAAGGTGCACGCGTAGTTGCGAACCCTGGTTGTTATCCAACTTCTGTTCAACTTCCACTTGTTCCATTGATCAAGGCCAATCTCATTGAACCTAAAAATATTATCATTGACTCGAAATCTGGTGTTAGCGGAGCAGGACGTGGTGCCAAGGAGGCAAACTTGTACACTGAAATAGCCGAGGGCATATATTCTTATGGTGTTACTCGTCACCGTCATGTTCCGGAAATTGAGCAGGGACTATCTAATGCTGCAAATTCAAAAGTAACCGTTAGTTTTACTCCACACCTAATGCCAATGAGTCGTGGTATGCAATCAACTATCTATGTGGAACTGGCTGCAGGGGTAAATTTCAAGGACTTAAACCAACAGCTGAAGTTATCCTATGAGGATGAAGAATTTGTAGTTGTATTGGAGGAAGGAGCTGTTCCTCATACTCATAACACTCGAGGATCTAACTATTGTTTCATCAATGTCTTTCCTGATCGAATTCCTGGGAGAGCAATAATCATTTCTGTTATTGATAATCTTGTCAAGGGAGCTTCAGGCCAAGCCTTACAGAATCTTAATCTGATGATGGGATTTCCAGAAAACACAGGGCTTCTTTATCAACCCTTGTTTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0016020 GO:0031974 GO:0031981 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Semialdhyde_dh Semialdhyde_dhC

Protein Analysis

397

Amino Acids

43.48

Weight (kDa)

7.14

Isoelectric Point (pI)

32.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Semialdhyde_dh	PF01118	56 - 191	2.8e-28	Semialdehyde dehydrogenase, NAD binding domain
Semialdhyde_dhC_1	PF22698	200 - 364	3.2e-59	Semialdehyde dehydrogenase, dimerisation domain
Semialdhyde_dhC	PF02774	209 - 367	1.5e-21	Semialdehyde dehydrogenase, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19940 AT2G19940
fragaria_vesca	FvH4_2g07021 FvH4_2g07021 FvH4_2g07021 FvH4_2g07021 FvH4_2g07021
malus_domestica	MD00G1050500.v1.1 MD10G1088500.v1.1
prunus_persica	Prupe.8G115600_v2.0.a1
pyrus_communis	pycom10g07140
rosa_chinensis	RchiOBHm_Chr6g0259381
rosa_laevigata	RLG00000014536
rosa_multiflora	Rmu_sc0012054.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246350 Rroxscaffold_7G00206640
rosa_rugosa	Rorug05G0588300 Rorug05G0588400 Rorug05G0588500
rosa_samantha	Rh6AG104000 Rh6BG097300 Rh6CG093300 Rh6DG087100
rosa_wichuraiana	Rw6G008990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	710
AccI	GTMKAC	1 cut(s)	460
AccII	CGCG	2 cut(s)	94, 579
AccIII	TCCGGA	1 cut(s)	787
AciI	CCGC	3 cut(s)	49, 296, 696
AclWI	GGATC	1 cut(s)	1024
AcsI	RAATTY	4 cut(s)	820, 913, 962, 1053
AcuI	CTGAAG	2 cut(s)	959, 1092
AfaI	GTAC	1 cut(s)	731
AfiI	CCNNNNNNNGG	2 cut(s)	52, 236
AflIII	ACRYGT	1 cut(s)	577
AgsI	TTSAA	5 cut(s)	82, 617, 656, 825, 919
AjiI	CACGTC	1 cut(s)	707
AjnI	CCWGG	2 cut(s)	592, 1057
AjuI	GAANNNNNNNTTGG	2 cut(s)	150, 182
AluBI	AGCT	5 cut(s)	21, 269, 937, 989, 1106
AluI	AGCT	5 cut(s)	21, 269, 937, 989, 1106
Alw21I	GWGCWC	2 cut(s)	511, 577
Alw26I	GTCTC	1 cut(s)	459
Alw44I	GTGCAC	1 cut(s)	573
AlwI	GGATC	1 cut(s)	1024
Ama87I	CYCGRG	1 cut(s)	1011
Aor13HI	TCCGGA	1 cut(s)	787
AoxI	GGCC	4 cut(s)	84, 412, 642, 1111
ApaLI	GTGCAC	1 cut(s)	573
ApeKI	GCWGC	3 cut(s)	42, 815, 902
ApoI	RAATTY	4 cut(s)	820, 913, 962, 1053
ArsI	GACNNNNNNTTYG	2 cut(s)	535, 567
AspLEI	GCGC	1 cut(s)	96
AsuHPI	GGTGA	2 cut(s)	82, 767
AvaI	CYCGRG	1 cut(s)	1011
BaeGI	GKGCMC	1 cut(s)	577
BanI	GGYRCC	1 cut(s)	710
Bbv12I	GWGCWC	2 cut(s)	511, 577
BbvI	GCAGC	3 cut(s)	29, 802, 889
BccI	CCATC	2 cut(s)	234, 1135
BceAI	ACGGC	1 cut(s)	270
BcgI	CGANNNNNNTGC	2 cut(s)	24, 58
BciT130I	CCWGG	2 cut(s)	594, 1059
BclI	TGATCA	1 cut(s)	636
BcoDI	GTCTC	1 cut(s)	459
BfaI	CTAG	1 cut(s)	302
BfmI	CTRYAG	1 cut(s)	903
BglI	GCCNNNNNGGC	1 cut(s)	719
BglII	AGATCT	1 cut(s)	313
BisI	GCNGC	3 cut(s)	43, 816, 903
BlsI	GCNGC	3 cut(s)	44, 817, 904
Bme1390I	CCNGG	2 cut(s)	594, 1059
BmeT110I	CYCGRG	1 cut(s)	1011
BmgBI	CACGTC	1 cut(s)	707
BmiI	GGNNCC	3 cut(s)	181, 391, 712
BmrFI	CCNGG	2 cut(s)	594, 1059
BmsI	GCATC	3 cut(s)	307, 331, 352
BoxI	GACNNNNGTC	1 cut(s)	456
BsaAI	YACGTR	1 cut(s)	127
BsaJI	CCNNGG	4 cut(s)	592, 714, 744, 1058
BsaWI	WCCGGW	1 cut(s)	787
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 236
Bse118I	RCCGGY	1 cut(s)	38
Bse1I	ACTGG	3 cut(s)	183, 199, 903
Bse3DI	GCAATG	1 cut(s)	103
BseAI	TCCGGA	1 cut(s)	787
BseBI	CCWGG	2 cut(s)	594, 1059
BseDI	CCNNGG	4 cut(s)	592, 714, 744, 1058
BseGI	GGATG	4 cut(s)	226, 346, 367, 961
BseLI	CCNNNNNNNGG	2 cut(s)	52, 236
BseMI	GCAATG	1 cut(s)	103
BseMII	CTCAG	2 cut(s)	192, 465
BseNI	ACTGG	3 cut(s)	183, 199, 903
BseRI	GAGGAG	1 cut(s)	575
BseSI	GKGCMC	1 cut(s)	577
BseXI	GCAGC	3 cut(s)	29, 802, 889
Bsh1236I	CGCG	2 cut(s)	94, 579
BshFI	GGCC	4 cut(s)	86, 414, 644, 1113
BshNI	GGYRCC	1 cut(s)	710
BsiHKAI	GWGCWC	2 cut(s)	511, 577
BsiHKCI	CYCGRG	1 cut(s)	1011
BsiSI	CCGG	2 cut(s)	39, 788
BslFI	GGGAC	1 cut(s)	816
BslI	CCNNNNNNNGG	2 cut(s)	52, 236
BsmAI	GTCTC	1 cut(s)	459
BsmFI	GGGAC	1 cut(s)	816
BsnI	GGCC	4 cut(s)	86, 414, 644, 1113
BsoBI	CYCGRG	1 cut(s)	1011
Bsp1286I	GDGCHC	2 cut(s)	511, 577
Bsp13I	TCCGGA	1 cut(s)	787
Bsp1407I	TGTACA	1 cut(s)	729
Bsp143I	GATC	5 cut(s)	313, 439, 636, 1016, 1048
BspACI	CCGC	3 cut(s)	49, 296, 696
BspANI	GGCC	4 cut(s)	86, 414, 644, 1113
BspCNI	CTCAG	2 cut(s)	193, 466
BspEI	TCCGGA	1 cut(s)	787
BspFNI	CGCG	2 cut(s)	94, 579
BspLI	GGNNCC	3 cut(s)	181, 391, 712
BspMAI	CTGCAG	1 cut(s)	907
BspPI	GGATC	1 cut(s)	1024
BspT107I	GGYRCC	1 cut(s)	710
BsrDI	GCAATG	1 cut(s)	103
BsrFI	RCCGGY	1 cut(s)	38
BsrGI	TGTACA	1 cut(s)	729
BsrI	ACTGG	3 cut(s)	183, 199, 903
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	4 cut(s)	592, 714, 744, 1058
BssMI	GATC	5 cut(s)	313, 439, 636, 1016, 1048
BssT1I	CCWWGG	1 cut(s)	714
Bst2UI	CCWGG	2 cut(s)	594, 1059
Bst4CI	ACNGT	3 cut(s)	276, 779, 835
BstAUI	TGTACA	1 cut(s)	729
BstBAI	YACGTR	1 cut(s)	127
BstC8I	GCNNGC	1 cut(s)	577
BstDEI	CTNAG	3 cut(s)	201, 474, 1188
BstENI	CCTNNNNNAGG	1 cut(s)	50
BstF5I	GGATG	4 cut(s)	226, 346, 367, 961
BstFNI	CGCG	2 cut(s)	94, 579
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	5 cut(s)	316, 442, 639, 1019, 1051
BstMAI	GTCTC	1 cut(s)	459
BstMBI	GATC	5 cut(s)	313, 439, 636, 1016, 1048
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 506, 719
BstNI	CCWGG	2 cut(s)	594, 1059
BstPAI	GACNNNNGTC	1 cut(s)	456
BstSCI	CCNGG	2 cut(s)	592, 1057
BstSFI	CTRYAG	1 cut(s)	903
BstSLI	GKGCMC	1 cut(s)	577
BstUI	CGCG	2 cut(s)	94, 579
BstV1I	GCAGC	3 cut(s)	29, 802, 889
BstX2I	RGATCY	2 cut(s)	313, 1016
BstYI	RGATCY	2 cut(s)	313, 1016
BsuRI	GGCC	4 cut(s)	86, 414, 644, 1113
BtrI	CACGTC	1 cut(s)	707
BtsCI	GGATG	4 cut(s)	226, 346, 367, 961
BtsIMutI	CAGTG	3 cut(s)	190, 192, 732
Cac8I	GCNNGC	1 cut(s)	577
CfoI	GCGC	1 cut(s)	96
Cfr10I	RCCGGY	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	730
CviAII	CATG	2 cut(s)	386, 782
CviQI	GTAC	1 cut(s)	730
DdeI	CTNAG	3 cut(s)	201, 474, 1188
DpnI	GATC	5 cut(s)	315, 441, 638, 1018, 1050
DpnII	GATC	5 cut(s)	313, 439, 636, 1016, 1048
DraI	TTTAAA	1 cut(s)	429
Eco130I	CCWWGG	1 cut(s)	714
Eco147I	AGGCCT	1 cut(s)	414
Eco57I	CTGAAG	2 cut(s)	959, 1092
Eco88I	CYCGRG	1 cut(s)	1011
EcoNI	CCTNNNNNAGG	1 cut(s)	50
EcoRI	GAATTC	1 cut(s)	1053
EcoRII	CCWGG	2 cut(s)	592, 1057
EcoT14I	CCWWGG	1 cut(s)	714
ErhI	CCWWGG	1 cut(s)	714
FaeI	CATG	2 cut(s)	389, 785
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FaqI	GGGAC	1 cut(s)	816
FatI	CATG	2 cut(s)	385, 781
FauI	CCCGC	1 cut(s)	303
FbaI	TGATCA	1 cut(s)	636
FblI	GTMKAC	1 cut(s)	460
Fnu4HI	GCNGC	3 cut(s)	43, 816, 903
FokI	GGATG	4 cut(s)	213, 353, 374, 968
Fsp4HI	GCNGC	3 cut(s)	43, 816, 903
FspBI	CTAG	1 cut(s)	302
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	3 cut(s)	43, 816, 903
HaeIII	GGCC	4 cut(s)	86, 414, 644, 1113
HapII	CCGG	2 cut(s)	39, 788
HhaI	GCGC	1 cut(s)	96
Hin1II	CATG	2 cut(s)	389, 785
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HinfI	GANTC	3 cut(s)	677, 865, 1126
HpaII	CCGG	2 cut(s)	39, 788
HphI	GGTGA	2 cut(s)	82, 767
Hpy166II	GTNNAC	4 cut(s)	73, 461, 575, 732
Hpy188I	TCNGA	5 cut(s)	35, 202, 355, 475, 1137
Hpy188III	TCNNGA	3 cut(s)	788, 1046, 1151
Hpy8I	GTNNAC	4 cut(s)	73, 461, 575, 732
HpyAV	CCTTC	4 cut(s)	76, 100, 425, 977
HpyCH4III	ACNGT	3 cut(s)	276, 779, 835
HpyCH4IV	ACGT	2 cut(s)	126, 706
HpyCH4V	TGCA	7 cut(s)	61, 101, 520, 575, 818, 877, 905
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 506, 719
HpyF3I	CTNAG	3 cut(s)	201, 474, 1188
HpySE526I	ACGT	2 cut(s)	126, 706
Hsp92II	CATG	2 cut(s)	389, 785
HspAI	GCGC	1 cut(s)	94
Kpn2I	TCCGGA	1 cut(s)	787
Ksp22I	TGATCA	1 cut(s)	636
Kzo9I	GATC	5 cut(s)	313, 439, 636, 1016, 1048
LmnI	GCTCC	5 cut(s)	26, 179, 698, 986, 1103
Lsp1109I	GCAGC	3 cut(s)	29, 802, 889
LweI	GCATC	3 cut(s)	307, 331, 352
MaeI	CTAG	1 cut(s)	302
MaeII	ACGT	2 cut(s)	126, 706
MaeIII	GTNAC	5 cut(s)	122, 188, 766, 773, 829
MalI	GATC	5 cut(s)	315, 441, 638, 1018, 1050
MboI	GATC	5 cut(s)	313, 439, 636, 1016, 1048
MboII	GAAGA	2 cut(s)	494, 971
MflI	RGATCY	2 cut(s)	313, 1016
MhlI	GDGCHC	2 cut(s)	511, 577
MluCI	AATT	8 cut(s)	56, 76, 402, 792, 820, 913, 962, 1053
MluI	ACGCGT	1 cut(s)	577
MlyI	GAGTC	2 cut(s)	671, 874
MmeI	TCCRAC	1 cut(s)	629
MroI	TCCGGA	1 cut(s)	787
MseI	TTAA	4 cut(s)	117, 428, 926, 1131
MslI	CAYNNNNRTG	1 cut(s)	780
MspA1I	CMGCKG	1 cut(s)	937
MspI	CCGG	2 cut(s)	39, 788
MspR9I	CCNGG	2 cut(s)	594, 1059
MvaI	CCWGG	2 cut(s)	594, 1059
MvnI	CGCG	2 cut(s)	94, 579
MwoI	GCNNNNNNNGC	3 cut(s)	48, 506, 719
NdeII	GATC	5 cut(s)	313, 439, 636, 1016, 1048
NlaIII	CATG	2 cut(s)	389, 785
NlaIV	GGNNCC	3 cut(s)	181, 391, 712
NmeAIII	GCCGAG	1 cut(s)	769
NmuCI	GTSAC	1 cut(s)	773
PaeR7I	CTCGAG	1 cut(s)	1011
PceI	AGGCCT	1 cut(s)	414
PfeI	GAWTC	1 cut(s)	1126
PkrI	GCNGC	3 cut(s)	44, 817, 904
PleI	GAGTC	2 cut(s)	671, 873
PpsI	GAGTC	2 cut(s)	671, 873
Ppu21I	YACGTR	1 cut(s)	127
PshAI	GACNNNNGTC	1 cut(s)	456
Psp6I	CCWGG	2 cut(s)	592, 1057
PspGI	CCWGG	2 cut(s)	592, 1057
PspN4I	GGNNCC	3 cut(s)	181, 391, 712
PspXI	VCTCGAGB	1 cut(s)	1011
PstI	CTGCAG	1 cut(s)	907
PsuI	RGATCY	2 cut(s)	313, 1016
PvuII	CAGCTG	1 cut(s)	937
RsaI	GTAC	1 cut(s)	731
RsaNI	GTAC	1 cut(s)	730
RseI	CAYNNNNRTG	1 cut(s)	780
SaqAI	TTAA	4 cut(s)	117, 428, 926, 1131
SatI	GCNGC	3 cut(s)	43, 816, 903
Sau3AI	GATC	5 cut(s)	313, 439, 636, 1016, 1048
SchI	GAGTC	2 cut(s)	671, 874
ScrFI	CCNGG	2 cut(s)	594, 1059
SduI	GDGCHC	2 cut(s)	511, 577
SfaNI	GCATC	3 cut(s)	307, 331, 352
SfcI	CTRYAG	1 cut(s)	903
Sfr274I	CTCGAG	1 cut(s)	1011
SlaI	CTCGAG	1 cut(s)	1011
SmiMI	CAYNNNNRTG	1 cut(s)	780
SmlI	CTYRAG	1 cut(s)	1011
SmoI	CTYRAG	1 cut(s)	1011
Sse9I	AATT	8 cut(s)	56, 76, 402, 792, 820, 913, 962, 1053
SseBI	AGGCCT	1 cut(s)	414
SsiI	CCGC	3 cut(s)	49, 296, 696
SspI	AATATT	1 cut(s)	667
SspMI	CTAG	1 cut(s)	302
StuI	AGGCCT	1 cut(s)	414
StyD4I	CCNGG	2 cut(s)	592, 1057
StyI	CCWWGG	1 cut(s)	714
TaaI	ACNGT	3 cut(s)	276, 779, 835
TaiI	ACGT	2 cut(s)	129, 709
TaqI	TCGA	3 cut(s)	680, 1012, 1051
TasI	AATT	8 cut(s)	56, 76, 402, 792, 820, 913, 962, 1053
TatI	WGTACW	1 cut(s)	729
TfiI	GAWTC	1 cut(s)	1126
Tru1I	TTAA	4 cut(s)	117, 428, 926, 1131
Tru9I	TTAA	4 cut(s)	117, 428, 926, 1131
TscAI	CASTG	3 cut(s)	190, 199, 739
TseFI	GTSAC	1 cut(s)	773
TseI	GCWGC	3 cut(s)	42, 815, 902
Tsp45I	GTSAC	1 cut(s)	773
TspDTI	ATGAA	4 cut(s)	17, 495, 972, 1021
TspGWI	ACGGA	1 cut(s)	446
TspRI	CASTG	3 cut(s)	190, 199, 739
VneI	GTGCAC	1 cut(s)	573
XagI	CCTNNNNNAGG	1 cut(s)	50
XapI	RAATTY	4 cut(s)	820, 913, 962, 1053
XcmI	CCANNNNNNNNNTGG	1 cut(s)	233
XhoI	CTCGAG	1 cut(s)	1011
XmiI	GTMKAC	1 cut(s)	460
XspI	CTAG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.