Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007780

Physical Location & Seq

Genomic Coordinates Reverse (-)

56398494 .. 56403736

Gene Structure 5243 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00206640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGAGCTCAGCAATTCTCAACTCCAATTTTCTCCAAACTGGGTGCCAATGGAAGGATGGAGTAAAGAATTTAGAGGGTAATAAGCGAAATGCAGGGAAGCTTTTTGTGAAATGTTCTGTGAATTCAAAAACCCAGAGAGCAGAAAAGGAAGTTCGCCTTGGTGTTCTTGGAGCCAGTGGCTACACTGGTTCTGAGATTGTTCGGCTGCTGGCAAATCATCCTCACTTTGGCATTACCTTAATGACTGCTGATAGAAAAGCTGGACAGTCAATTGCATCGGTGTTTCCTCATCTAATTTCCCAAAATCTGCCAAGGATGGTTGCTATCAAGGATGCCGATTTTTCTGATGTGGATGCAGTATTTTGTTGTTTACCACATGGAACAACACAGGAAATTATCAAAGGCCTTCCAAAGAGTTTAAAGATTGTTGATCTGTCTGCTGACTTCCGTCTACAAGATATATCTGAGTATGAAGAATGGTATGGTCAGGCACATAGAGCACCGGATTTGCAGAAAGAAGCTGTGTATGGTTTGACAGAGATTTTGAGGAGGAGATTAAAAGTGCGCGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0016020 GO:0031974 GO:0031981 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Semialdhyde_dh Semialdhyde_dhC

Protein Analysis

190

Amino Acids

21.11

Weight (kDa)

9.21

Isoelectric Point (pI)

30.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Semialdhyde_dh	PF01118	53 - 187	6.7e-28	Semialdehyde dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19940 AT2G19940
fragaria_vesca	FvH4_2g07021 FvH4_2g07021 FvH4_2g07021 FvH4_2g07021 FvH4_2g07021
malus_domestica	MD00G1050500.v1.1 MD10G1088500.v1.1
prunus_persica	Prupe.8G115600_v2.0.a1
pyrus_communis	pycom10g07140
rosa_chinensis	RchiOBHm_Chr6g0259381
rosa_laevigata	RLG00000014536
rosa_multiflora	Rmu_sc0012054.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246350 Rroxscaffold_7G00206640
rosa_rugosa	Rorug05G0588300 Rorug05G0588400 Rorug05G0588500
rosa_samantha	Rh6AG104000 Rh6BG097300 Rh6CG093300 Rh6DG087100
rosa_wichuraiana	Rw6G008990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	42
AccI	GTMKAC	1 cut(s)	451
AccII	CGCG	1 cut(s)	567
AcsI	RAATTY	2 cut(s)	67, 121
AfiI	CCNNNNNNNGG	2 cut(s)	52, 227
AgsI	TTSAA	1 cut(s)	126
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
AluBI	AGCT	4 cut(s)	6, 100, 260, 521
AluI	AGCT	4 cut(s)	6, 100, 260, 521
Alw21I	GWGCWC	2 cut(s)	8, 502
AoxI	GGCC	1 cut(s)	403
ApeKI	GCWGC	1 cut(s)	205
ApoI	RAATTY	2 cut(s)	67, 121
ArsI	GACNNNNNNTTYG	2 cut(s)	526, 558
AspLEI	GCGC	1 cut(s)	567
BanI	GGYRCC	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	2 cut(s)	8, 502
BbvI	GCAGC	1 cut(s)	192
BccI	CCATC	2 cut(s)	50, 310
BfaI	CTAG	1 cut(s)	571
BisI	GCNGC	1 cut(s)	206
BlpI	GCTNAGC	1 cut(s)	7
BlsI	GCNGC	1 cut(s)	207
BmiI	GGNNCC	2 cut(s)	44, 172
BmrI	ACTGGG	1 cut(s)	48
BmsI	GCATC	3 cut(s)	284, 322, 343
BmuI	ACTGGG	1 cut(s)	48
BoxI	GACNNNNGTC	1 cut(s)	447
Bpu1102I	GCTNAGC	1 cut(s)	7
BsaJI	CCNNGG	2 cut(s)	157, 311
BsaWI	WCCGGW	1 cut(s)	502
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 227
Bse1I	ACTGG	3 cut(s)	43, 174, 190
BseDI	CCNNGG	2 cut(s)	157, 311
BseGI	GGATG	5 cut(s)	61, 217, 321, 337, 358
BseLI	CCNNNNNNNGG	2 cut(s)	52, 227
BseMII	CTCAG	3 cut(s)	21, 183, 456
BseNI	ACTGG	3 cut(s)	43, 174, 190
BseRI	GAGGAG	2 cut(s)	562, 565
BseXI	GCAGC	1 cut(s)	192
Bsh1236I	CGCG	1 cut(s)	567
BshFI	GGCC	1 cut(s)	405
BshNI	GGYRCC	1 cut(s)	42
BsiHKAI	GWGCWC	2 cut(s)	8, 502
BsiSI	CCGG	1 cut(s)	503
BslI	CCNNNNNNNGG	2 cut(s)	52, 227
BsnI	GGCC	1 cut(s)	405
Bsp1286I	GDGCHC	2 cut(s)	8, 502
Bsp143I	GATC	1 cut(s)	430
Bsp1720I	GCTNAGC	1 cut(s)	7
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	3 cut(s)	20, 184, 457
BspFNI	CGCG	1 cut(s)	567
BspLI	GGNNCC	2 cut(s)	44, 172
BspT107I	GGYRCC	1 cut(s)	42
BsrI	ACTGG	3 cut(s)	43, 174, 190
BssECI	CCNNGG	2 cut(s)	157, 311
BssMI	GATC	1 cut(s)	430
BssT1I	CCWWGG	2 cut(s)	157, 311
Bst4CI	ACNGT	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	3 cut(s)	7, 192, 465
BstF5I	GGATG	5 cut(s)	61, 217, 321, 337, 358
BstFNI	CGCG	1 cut(s)	567
BstHHI	GCGC	1 cut(s)	567
BstKTI	GATC	1 cut(s)	433
BstMBI	GATC	1 cut(s)	430
BstMWI	GCNNNNNNNGC	1 cut(s)	497
BstPAI	GACNNNNGTC	1 cut(s)	447
BstUI	CGCG	1 cut(s)	567
BstV1I	GCAGC	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	405
BtsCI	GGATG	5 cut(s)	61, 217, 321, 337, 358
BtsIMutI	CAGTG	2 cut(s)	181, 183
Cac8I	GCNNGC	1 cut(s)	210
CfoI	GCGC	1 cut(s)	567
CseI	GACGC	1 cut(s)	556
CviAII	CATG	1 cut(s)	377
CviJI	RGCY	8 cut(s)	6, 100, 173, 180, 205, 260, 405, 521
CviKI_1	RGCY	8 cut(s)	6, 100, 173, 180, 205, 260, 405, 521
DdeI	CTNAG	3 cut(s)	7, 192, 465
DpnI	GATC	1 cut(s)	432
DpnII	GATC	1 cut(s)	430
DraI	TTTAAA	1 cut(s)	420
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	2 cut(s)	157, 311
Eco147I	AGGCCT	1 cut(s)	405
Eco24I	GRGCYC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoRI	GAATTC	1 cut(s)	121
EcoT14I	CCWWGG	2 cut(s)	157, 311
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	2 cut(s)	157, 311
FaeI	CATG	1 cut(s)	380
FaiI	YATR	6 cut(s)	378, 461, 471, 483, 495, 528
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
FatI	CATG	1 cut(s)	376
FblI	GTMKAC	1 cut(s)	451
Fnu4HI	GCNGC	1 cut(s)	206
FokI	GGATG	5 cut(s)	68, 204, 328, 344, 365
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	206
FspBI	CTAG	1 cut(s)	571
GlaI	GCGC	1 cut(s)	566
GluI	GCNGC	1 cut(s)	206
HaeIII	GGCC	1 cut(s)	405
HapII	CCGG	1 cut(s)	503
HgaI	GACGC	1 cut(s)	556
HhaI	GCGC	1 cut(s)	567
Hin1II	CATG	1 cut(s)	380
Hin6I	GCGC	1 cut(s)	565
HinP1I	GCGC	1 cut(s)	565
HindIII	AAGCTT	1 cut(s)	98
HpaII	CCGG	1 cut(s)	503
Hpy166II	GTNNAC	2 cut(s)	371, 452
Hpy188I	TCNGA	3 cut(s)	193, 346, 466
Hpy8I	GTNNAC	2 cut(s)	371, 452
HpyAV	CCTTC	2 cut(s)	46, 416
HpyCH4III	ACNGT	1 cut(s)	267
HpyCH4V	TGCA	4 cut(s)	92, 275, 356, 511
HpyF10VI	GCNNNNNNNGC	1 cut(s)	497
HpyF3I	CTNAG	3 cut(s)	7, 192, 465
Hsp92II	CATG	1 cut(s)	380
HspAI	GCGC	1 cut(s)	565
Kzo9I	GATC	1 cut(s)	430
LmnI	GCTCC	1 cut(s)	170
Lsp1109I	GCAGC	1 cut(s)	192
LweI	GCATC	3 cut(s)	284, 322, 343
MaeI	CTAG	1 cut(s)	571
MalI	GATC	1 cut(s)	432
MboI	GATC	1 cut(s)	430
MboII	GAAGA	1 cut(s)	485
MfeI	CAATTG	1 cut(s)	270
MhlI	GDGCHC	2 cut(s)	8, 502
MluCI	AATT	7 cut(s)	12, 25, 67, 121, 270, 294, 393
MnlI	CCTC	5 cut(s)	67, 231, 297, 540, 543
MseI	TTAA	3 cut(s)	239, 419, 557
MspI	CCGG	1 cut(s)	503
MunI	CAATTG	1 cut(s)	270
MvnI	CGCG	1 cut(s)	567
MwoI	GCNNNNNNNGC	1 cut(s)	497
NdeII	GATC	1 cut(s)	430
NlaIII	CATG	1 cut(s)	380
NlaIV	GGNNCC	2 cut(s)	44, 172
PceI	AGGCCT	1 cut(s)	405
PkrI	GCNGC	1 cut(s)	207
PshAI	GACNNNNGTC	1 cut(s)	447
Psp124BI	GAGCTC	1 cut(s)	8
PspN4I	GGNNCC	2 cut(s)	44, 172
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	3 cut(s)	239, 419, 557
SatI	GCNGC	1 cut(s)	206
Sau3AI	GATC	1 cut(s)	430
SduI	GDGCHC	2 cut(s)	8, 502
SetI	ASST	5 cut(s)	8, 102, 239, 262, 523
SfaNI	GCATC	3 cut(s)	284, 322, 343
Sse9I	AATT	7 cut(s)	12, 25, 67, 121, 270, 294, 393
SseBI	AGGCCT	1 cut(s)	405
SspMI	CTAG	1 cut(s)	571
SstI	GAGCTC	1 cut(s)	8
StuI	AGGCCT	1 cut(s)	405
StyI	CCWWGG	2 cut(s)	157, 311
TaaI	ACNGT	1 cut(s)	267
TasI	AATT	7 cut(s)	12, 25, 67, 121, 270, 294, 393
Tru1I	TTAA	3 cut(s)	239, 419, 557
Tru9I	TTAA	3 cut(s)	239, 419, 557
TscAI	CASTG	2 cut(s)	181, 190
TseI	GCWGC	1 cut(s)	205
TspDTI	ATGAA	1 cut(s)	486
TspGWI	ACGGA	1 cut(s)	437
TspRI	CASTG	2 cut(s)	181, 190
XapI	RAATTY	2 cut(s)	67, 121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XmiI	GTMKAC	1 cut(s)	451
XspI	CTAG	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.