Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0007780

Physical Location & Seq

Genomic Coordinates Reverse (-)

15351257 .. 15356974

Gene Structure 5718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG104000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGAGCTCTGCAACTCTCAGCGCCAATTTTCTCCAAACTGGGTGCCAATGGAAGGATGGAGTGAAGAATTTAGAGAGAAATGCAGGGAAGGTGTTTGTGAAATGTTCTGTGAATTCAAAAACGCAGAAAGCAGAAAAGGAAGTTCGCCTTGGTGTTCTTGGAGCCAGTGGCTACACTGGTTCTGAGATTGTTCGGCTGCTGGCAAATCATCCTCACTTTGGCATTACCTTAATGACTGCTGATAGAAAAGCTGGACAGTCAATTGCATCGGTGTTTCCTCATCTAATTTCCCAAAATCTGCCAAGGATGGTTGCTATCAAGGATGCCGATTTTTCTGATGTGGATGCAGTATTTTGTTGTTTACCACATGGAACAACACAGGAAATTATCAAAGGCCTTCCAAAGAGTTTAAAGATTGTTGATCTGTCTGCTGACTTCCGTCTACAAGATATATCTGAGTATGAAGAATGGTATGGTCAGGCACATAGAGCGCCGGATTTGCAGAAAGAAGCTGTGTATGGTTTGACAGAGATTTTGAGGGAGGAGATTAAAAGTGCGCGTCTAGTTGCTAACCCCGGCTGTTATCCGACTTCTATTCAGCTTCCCCTTGTTCCATTGTTTAAGGCTAATCTCATTCAATCTAAAAGTATTATTATCGACTCAAAATCTGGTGTTAGTGGAGCAGGACGTGGTGCCAAGGAGGCTAATTTGTACACTGAAATAGCTGAAGGCATATATTCTTATGGCATTACCCGTCATCGTCATGTTCCGGAAATCGAGCAGGGACTATCTAGTGCTGCCGATTCAAAAGTAACCGTTAGTTTTACTCCACATCTAATGCCAATGAGCCGTGGTATGCAGTCAACTATTTATGTGGAAATGGCTCCAGGGGTAGAAATCAAGGACTTGCGGCAACAGTTGAGGTTATCCTATGAGGATGAAGAATTTGTAGTTTTGTTGGAGGAAGGTGTTGTTCCTCGCACGCATAATACTCGAGGTTCTAATTATTGTTTCATCAATGTCTTTCCTGATCGAATCCCCGGAAGAGCAATAATAATTTCAGTTATCGATAATCTTGTCAAGGGAGCTTCAGGTCAGGCTCTACAGAATCTTAATGTGATGATGGGATTTCCAGAGAGCACAGGGCTTCTTTATCAGCCATTGTTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0016020 GO:0031974 GO:0031981 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Semialdhyde_dh Semialdhyde_dhC

Protein Analysis

390

Amino Acids

42.83

Weight (kDa)

6.76

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Semialdhyde_dh	PF01118	50 - 186	1.5e-28	Semialdehyde dehydrogenase, NAD binding domain
Semialdhyde_dhC_1	PF22698	194 - 358	6.3e-58	Semialdehyde dehydrogenase, dimerisation domain
Semialdhyde_dhC	PF02774	203 - 361	1.3e-20	Semialdehyde dehydrogenase, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19940 AT2G19940
fragaria_vesca	FvH4_2g07021 FvH4_2g07021 FvH4_2g07021 FvH4_2g07021 FvH4_2g07021
malus_domestica	MD00G1050500.v1.1 MD10G1088500.v1.1
prunus_persica	Prupe.8G115600_v2.0.a1
pyrus_communis	pycom10g07140
rosa_chinensis	RchiOBHm_Chr6g0259381
rosa_laevigata	RLG00000014536
rosa_multiflora	Rmu_sc0012054.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246350 Rroxscaffold_7G00206640
rosa_rugosa	Rorug05G0588300 Rorug05G0588400 Rorug05G0588500
rosa_samantha	Rh6AG104000 Rh6BG097300 Rh6CG093300 Rh6DG087100
rosa_wichuraiana	Rw6G008990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	42, 692
AccI	GTMKAC	1 cut(s)	442
AccII	CGCG	1 cut(s)	559
AccIII	TCCGGA	1 cut(s)	769
AciI	CCGC	1 cut(s)	910
AcsI	RAATTY	3 cut(s)	67, 112, 944
AcuI	CTGAAG	2 cut(s)	747, 1074
AfaI	GTAC	1 cut(s)	713
AfiI	CCNNNNNNNGG	2 cut(s)	52, 218
AgsI	TTSAA	3 cut(s)	117, 638, 807
AjiI	CACGTC	1 cut(s)	689
AjnI	CCWGG	1 cut(s)	886
AjuI	GAANNNNNNNTTGG	2 cut(s)	132, 164
AluBI	AGCT	6 cut(s)	6, 251, 512, 601, 725, 1088
AluI	AGCT	6 cut(s)	6, 251, 512, 601, 725, 1088
Alw21I	GWGCWC	2 cut(s)	8, 1142
Ama87I	CYCGRG	1 cut(s)	993
Aor13HI	TCCGGA	1 cut(s)	769
AoxI	GGCC	1 cut(s)	394
ApeKI	GCWGC	2 cut(s)	196, 797
ApoI	RAATTY	3 cut(s)	67, 112, 944
ArsI	GACNNNNNNTTYG	2 cut(s)	517, 549
AspLEI	GCGC	3 cut(s)	23, 493, 559
AsuC2I	CCSGG	2 cut(s)	576, 1041
AvaI	CYCGRG	1 cut(s)	993
BanI	GGYRCC	2 cut(s)	42, 692
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	2 cut(s)	8, 1142
BbvI	GCAGC	2 cut(s)	183, 784
BccI	CCATC	3 cut(s)	50, 301, 1117
BceAI	ACGGC	1 cut(s)	834
BcgI	CGANNNNNNTGC	2 cut(s)	974, 1008
BciT130I	CCWGG	1 cut(s)	888
BcnI	CCSGG	2 cut(s)	576, 1041
BfaI	CTAG	2 cut(s)	563, 792
BfmI	CTRYAG	1 cut(s)	1103
BfoI	RGCGCY	2 cut(s)	24, 494
BglI	GCCNNNNNGGC	1 cut(s)	701
BisI	GCNGC	3 cut(s)	197, 798, 911
BlsI	GCNGC	3 cut(s)	198, 799, 912
Bme1390I	CCNGG	3 cut(s)	576, 888, 1041
BmeT110I	CYCGRG	1 cut(s)	993
BmgBI	CACGTC	1 cut(s)	689
BmiI	GGNNCC	4 cut(s)	44, 163, 694, 885
BmrFI	CCNGG	3 cut(s)	576, 888, 1041
BmrI	ACTGGG	1 cut(s)	48
BmsI	GCATC	3 cut(s)	275, 313, 334
BmuI	ACTGGG	1 cut(s)	48
BoxI	GACNNNNGTC	1 cut(s)	438
BpmI	CTGGAG	1 cut(s)	870
BpuMI	CCSGG	2 cut(s)	576, 1041
Bsa29I	ATCGAT	1 cut(s)	1068
BsaJI	CCNNGG	7 cut(s)	148, 302, 574, 696, 850, 887, 1039
BsaWI	WCCGGW	1 cut(s)	769
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 218
Bse1I	ACTGG	3 cut(s)	43, 165, 181
BseAI	TCCGGA	1 cut(s)	769
BseBI	CCWGG	1 cut(s)	888
BseCI	ATCGAT	1 cut(s)	1068
BseDI	CCNNGG	7 cut(s)	148, 302, 574, 696, 850, 887, 1039
BseGI	GGATG	6 cut(s)	61, 208, 312, 328, 349, 943
BseLI	CCNNNNNNNGG	2 cut(s)	52, 218
BseMII	CTCAG	3 cut(s)	31, 174, 447
BseNI	ACTGG	3 cut(s)	43, 165, 181
BseRI	GAGGAG	1 cut(s)	557
BseXI	GCAGC	2 cut(s)	183, 784
Bsh1236I	CGCG	1 cut(s)	559
BshFI	GGCC	1 cut(s)	396
BshNI	GGYRCC	2 cut(s)	42, 692
BshVI	ATCGAT	1 cut(s)	1068
BsiHKAI	GWGCWC	2 cut(s)	8, 1142
BsiHKCI	CYCGRG	1 cut(s)	993
BsiSI	CCGG	4 cut(s)	494, 576, 770, 1041
BslFI	GGGAC	1 cut(s)	798
BslI	CCNNNNNNNGG	2 cut(s)	52, 218
BsmFI	GGGAC	1 cut(s)	798
BsnI	GGCC	1 cut(s)	396
BsoBI	CYCGRG	1 cut(s)	993
Bsp1286I	GDGCHC	2 cut(s)	8, 1142
Bsp13I	TCCGGA	1 cut(s)	769
Bsp1407I	TGTACA	1 cut(s)	711
Bsp143I	GATC	2 cut(s)	421, 1030
BspACI	CCGC	1 cut(s)	910
BspANI	GGCC	1 cut(s)	396
BspCNI	CTCAG	3 cut(s)	30, 175, 448
BspDI	ATCGAT	1 cut(s)	1068
BspEI	TCCGGA	1 cut(s)	769
BspFNI	CGCG	1 cut(s)	559
BspLI	GGNNCC	4 cut(s)	44, 163, 694, 885
BspQI	GCTCTTC	1 cut(s)	1039
BspT107I	GGYRCC	2 cut(s)	42, 692
BsrGI	TGTACA	1 cut(s)	711
BsrI	ACTGG	3 cut(s)	43, 165, 181
BssECI	CCNNGG	7 cut(s)	148, 302, 574, 696, 850, 887, 1039
BssMI	GATC	2 cut(s)	421, 1030
BssT1I	CCWWGG	3 cut(s)	148, 302, 696
Bst2UI	CCWGG	1 cut(s)	888
Bst4CI	ACNGT	3 cut(s)	258, 817, 918
Bst6I	CTCTTC	1 cut(s)	1039
BstAUI	TGTACA	1 cut(s)	711
BstC8I	GCNNGC	2 cut(s)	201, 983
BstDEI	CTNAG	3 cut(s)	17, 183, 456
BstDSI	CCRYGG	1 cut(s)	850
BstF5I	GGATG	6 cut(s)	61, 208, 312, 328, 349, 943
BstFNI	CGCG	1 cut(s)	559
BstH2I	RGCGCY	2 cut(s)	24, 494
BstHHI	GCGC	3 cut(s)	23, 493, 559
BstKTI	GATC	2 cut(s)	424, 1033
BstMBI	GATC	2 cut(s)	421, 1030
BstMWI	GCNNNNNNNGC	3 cut(s)	488, 499, 701
BstNI	CCWGG	1 cut(s)	888
BstPAI	GACNNNNGTC	1 cut(s)	438
BstSCI	CCNGG	3 cut(s)	574, 886, 1039
BstSFI	CTRYAG	1 cut(s)	1103
BstUI	CGCG	1 cut(s)	559
BstV1I	GCAGC	2 cut(s)	183, 784
Bsu15I	ATCGAT	1 cut(s)	1068
BsuRI	GGCC	1 cut(s)	396
BsuTUI	ATCGAT	1 cut(s)	1068
BtgI	CCRYGG	1 cut(s)	850
BtrI	CACGTC	1 cut(s)	689
BtsCI	GGATG	6 cut(s)	61, 208, 312, 328, 349, 943
BtsIMutI	CAGTG	3 cut(s)	172, 174, 714
Cac8I	GCNNGC	2 cut(s)	201, 983
CfoI	GCGC	3 cut(s)	23, 493, 559
ClaI	ATCGAT	1 cut(s)	1068
CseI	GACGC	1 cut(s)	548
Csp6I	GTAC	1 cut(s)	712
CviAII	CATG	2 cut(s)	368, 764
CviQI	GTAC	1 cut(s)	712
DdeI	CTNAG	3 cut(s)	17, 183, 456
DpnI	GATC	2 cut(s)	423, 1032
DpnII	GATC	2 cut(s)	421, 1030
DraI	TTTAAA	1 cut(s)	411
Eam1104I	CTCTTC	1 cut(s)	1039
EarI	CTCTTC	1 cut(s)	1039
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	3 cut(s)	148, 302, 696
Eco147I	AGGCCT	1 cut(s)	396
Eco24I	GRGCYC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	2 cut(s)	747, 1074
Eco88I	CYCGRG	1 cut(s)	993
EcoICRI	GAGCTC	1 cut(s)	6
EcoRI	GAATTC	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	886
EcoT14I	CCWWGG	3 cut(s)	148, 302, 696
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	3 cut(s)	148, 302, 696
FaeI	CATG	2 cut(s)	371, 767
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FaqI	GGGAC	1 cut(s)	798
FatI	CATG	2 cut(s)	367, 763
FblI	GTMKAC	1 cut(s)	442
Fnu4HI	GCNGC	3 cut(s)	197, 798, 911
FokI	GGATG	6 cut(s)	68, 195, 319, 335, 356, 950
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	3 cut(s)	197, 798, 911
FspBI	CTAG	2 cut(s)	563, 792
GlaI	GCGC	3 cut(s)	22, 492, 558
GluI	GCNGC	3 cut(s)	197, 798, 911
GsuI	CTGGAG	1 cut(s)	870
HaeII	RGCGCY	2 cut(s)	24, 494
HaeIII	GGCC	1 cut(s)	396
HapII	CCGG	4 cut(s)	494, 576, 770, 1041
HgaI	GACGC	1 cut(s)	548
HhaI	GCGC	3 cut(s)	23, 493, 559
Hin1II	CATG	2 cut(s)	371, 767
Hin6I	GCGC	3 cut(s)	21, 491, 557
HinP1I	GCGC	3 cut(s)	21, 491, 557
HincII	GTYRAC	1 cut(s)	864
HindII	GTYRAC	1 cut(s)	864
HinfI	GANTC	4 cut(s)	659, 803, 1035, 1108
HpaII	CCGG	4 cut(s)	494, 576, 770, 1041
Hpy166II	GTNNAC	4 cut(s)	362, 443, 714, 864
Hpy188I	TCNGA	4 cut(s)	184, 337, 457, 588
Hpy188III	TCNNGA	3 cut(s)	770, 1028, 1133
Hpy8I	GTNNAC	4 cut(s)	362, 443, 714, 864
HpyAV	CCTTC	5 cut(s)	46, 82, 407, 722, 959
HpyCH4III	ACNGT	3 cut(s)	258, 817, 918
HpyCH4IV	ACGT	1 cut(s)	688
HpyCH4V	TGCA	6 cut(s)	11, 83, 266, 347, 502, 859
HpyF10VI	GCNNNNNNNGC	3 cut(s)	488, 499, 701
HpyF3I	CTNAG	3 cut(s)	17, 183, 456
HpySE526I	ACGT	1 cut(s)	688
Hsp92II	CATG	2 cut(s)	371, 767
HspAI	GCGC	3 cut(s)	21, 491, 557
Kpn2I	TCCGGA	1 cut(s)	769
Kzo9I	GATC	2 cut(s)	421, 1030
LguI	GCTCTTC	1 cut(s)	1039
LmnI	GCTCC	4 cut(s)	161, 680, 889, 1085
Lsp1109I	GCAGC	2 cut(s)	183, 784
LweI	GCATC	3 cut(s)	275, 313, 334
MaeI	CTAG	2 cut(s)	563, 792
MaeII	ACGT	1 cut(s)	688
MaeIII	GTNAC	1 cut(s)	811
MalI	GATC	2 cut(s)	423, 1032
MboI	GATC	2 cut(s)	421, 1030
MboII	GAAGA	4 cut(s)	76, 476, 953, 1056
MfeI	CAATTG	1 cut(s)	261
MhlI	GDGCHC	2 cut(s)	8, 1142
MlyI	GAGTC	1 cut(s)	653
MmeI	TCCRAC	2 cut(s)	611, 939
MroI	TCCGGA	1 cut(s)	769
MseI	TTAA	6 cut(s)	230, 410, 549, 621, 1113, 1171
MslI	CAYNNNNRTG	1 cut(s)	762
MspI	CCGG	4 cut(s)	494, 576, 770, 1041
MspR9I	CCNGG	3 cut(s)	576, 888, 1041
MunI	CAATTG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	888
MvnI	CGCG	1 cut(s)	559
MwoI	GCNNNNNNNGC	3 cut(s)	488, 499, 701
NciI	CCSGG	2 cut(s)	576, 1041
NdeII	GATC	2 cut(s)	421, 1030
NlaIII	CATG	2 cut(s)	371, 767
NlaIV	GGNNCC	4 cut(s)	44, 163, 694, 885
PaeR7I	CTCGAG	1 cut(s)	993
PceI	AGGCCT	1 cut(s)	396
PciSI	GCTCTTC	1 cut(s)	1039
PfeI	GAWTC	3 cut(s)	803, 1035, 1108
PkrI	GCNGC	3 cut(s)	198, 799, 912
PleI	GAGTC	1 cut(s)	653
PpsI	GAGTC	1 cut(s)	653
PshAI	GACNNNNGTC	1 cut(s)	438
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	886
PspGI	CCWGG	1 cut(s)	886
PspN4I	GGNNCC	4 cut(s)	44, 163, 694, 885
PspXI	VCTCGAGB	1 cut(s)	993
RsaI	GTAC	1 cut(s)	713
RsaNI	GTAC	1 cut(s)	712
RseI	CAYNNNNRTG	1 cut(s)	762
SacI	GAGCTC	1 cut(s)	8
SapI	GCTCTTC	1 cut(s)	1039
SaqAI	TTAA	6 cut(s)	230, 410, 549, 621, 1113, 1171
SatI	GCNGC	3 cut(s)	197, 798, 911
Sau3AI	GATC	2 cut(s)	421, 1030
SchI	GAGTC	1 cut(s)	653
ScrFI	CCNGG	3 cut(s)	576, 888, 1041
SduI	GDGCHC	2 cut(s)	8, 1142
SfaNI	GCATC	3 cut(s)	275, 313, 334
SfcI	CTRYAG	1 cut(s)	1103
Sfr274I	CTCGAG	1 cut(s)	993
SlaI	CTCGAG	1 cut(s)	993
SmiMI	CAYNNNNRTG	1 cut(s)	762
SmlI	CTYRAG	1 cut(s)	993
SmoI	CTYRAG	1 cut(s)	993
SseBI	AGGCCT	1 cut(s)	396
SsiI	CCGC	1 cut(s)	910
SspMI	CTAG	2 cut(s)	563, 792
SstI	GAGCTC	1 cut(s)	8
StuI	AGGCCT	1 cut(s)	396
StyD4I	CCNGG	3 cut(s)	574, 886, 1039
StyI	CCWWGG	3 cut(s)	148, 302, 696
TaaI	ACNGT	3 cut(s)	258, 817, 918
TaiI	ACGT	1 cut(s)	691
TaqI	TCGA	5 cut(s)	657, 777, 994, 1033, 1068
TatI	WGTACW	1 cut(s)	711
TauI	GCSGC	1 cut(s)	913
TfiI	GAWTC	3 cut(s)	803, 1035, 1108
Tru1I	TTAA	6 cut(s)	230, 410, 549, 621, 1113, 1171
Tru9I	TTAA	6 cut(s)	230, 410, 549, 621, 1113, 1171
TscAI	CASTG	3 cut(s)	172, 181, 721
TseI	GCWGC	2 cut(s)	196, 797
TspDTI	ATGAA	3 cut(s)	477, 954, 1003
TspGWI	ACGGA	1 cut(s)	428
TspRI	CASTG	3 cut(s)	172, 181, 721
XapI	RAATTY	3 cut(s)	67, 112, 944
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XhoI	CTCGAG	1 cut(s)	993
XmiI	GTMKAC	1 cut(s)	442
XspI	CTAG	2 cut(s)	563, 792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.