Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012054.1

Orthogroup ID

OG0007780

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 454

Gene Structure 454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012054.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

atgagctctgcaactctcagcgccaattttctccaaactgggtgccaatggaaggatggagtgaagaatgtagagagaaatgctgggaaggtgtttgtgaaatgttctgtgaattcaaaaacccagaaagcagaaaaggaagttcgccttggtgttcttggagccagtggctacactggttctgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0016020 GO:0031974 GO:0031981 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Semialdhyde_dh Semialdhyde_dhC

Protein Analysis

62

Amino Acids

6.6

Weight (kDa)

9.39

Isoelectric Point (pI)

15.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19940 AT2G19940
fragaria_vesca	FvH4_2g07021 FvH4_2g07021 FvH4_2g07021 FvH4_2g07021 FvH4_2g07021
malus_domestica	MD00G1050500.v1.1 MD10G1088500.v1.1
prunus_persica	Prupe.8G115600_v2.0.a1
pyrus_communis	pycom10g07140
rosa_chinensis	RchiOBHm_Chr6g0259381
rosa_laevigata	RLG00000014536
rosa_multiflora	Rmu_sc0012054.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246350 Rroxscaffold_7G00206640
rosa_rugosa	Rorug05G0588300 Rorug05G0588400 Rorug05G0588500
rosa_samantha	Rh6AG104000 Rh6BG097300 Rh6CG093300 Rh6DG087100
rosa_wichuraiana	Rw6G008990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	42
AcsI	RAATTY	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	1 cut(s)	117
AjuI	GAANNNNNNNTTGG	2 cut(s)	132, 164
AluBI	AGCT	1 cut(s)	6
AluI	AGCT	1 cut(s)	6
Alw21I	GWGCWC	1 cut(s)	8
ApoI	RAATTY	1 cut(s)	112
AspLEI	GCGC	1 cut(s)	23
BanI	GGYRCC	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	1 cut(s)	50
BfoI	RGCGCY	1 cut(s)	24
BmiI	GGNNCC	2 cut(s)	44, 163
BmrI	ACTGGG	1 cut(s)	48
BmuI	ACTGGG	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	3 cut(s)	43, 165, 181
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	2 cut(s)	31, 174
BseNI	ACTGG	3 cut(s)	43, 165, 181
BseYI	CCCAGC	1 cut(s)	83
BshNI	GGYRCC	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	8
BslI	CCNNNNNNNGG	1 cut(s)	52
Bsp1286I	GDGCHC	1 cut(s)	8
BspCNI	CTCAG	2 cut(s)	30, 175
BspLI	GGNNCC	2 cut(s)	44, 163
BspT107I	GGYRCC	1 cut(s)	42
BsrI	ACTGG	3 cut(s)	43, 165, 181
BssECI	CCNNGG	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	148
BstDEI	CTNAG	2 cut(s)	17, 183
BstF5I	GGATG	1 cut(s)	61
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	61
BtsIMutI	CAGTG	2 cut(s)	172, 174
CfoI	GCGC	1 cut(s)	23
CviJI	RGCY	3 cut(s)	6, 164, 171
CviKI_1	RGCY	3 cut(s)	6, 164, 171
DdeI	CTNAG	2 cut(s)	17, 183
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoRI	GAATTC	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	148
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	8
GlaI	GCGC	1 cut(s)	22
GsaI	CCCAGC	1 cut(s)	87
HaeII	RGCGCY	1 cut(s)	24
HhaI	GCGC	1 cut(s)	23
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
Hpy188I	TCNGA	1 cut(s)	184
HpyAV	CCTTC	2 cut(s)	46, 82
HpyCH4V	TGCA	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	17, 183
HspAI	GCGC	1 cut(s)	21
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	5 cut(s)	24, 69, 137, 162, 178
MboII	GAAGA	1 cut(s)	76
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	2 cut(s)	25, 112
NlaIV	GGNNCC	2 cut(s)	44, 163
Psp124BI	GAGCTC	1 cut(s)	8
PspFI	CCCAGC	1 cut(s)	83
PspN4I	GGNNCC	2 cut(s)	44, 163
SacI	GAGCTC	1 cut(s)	8
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	2 cut(s)	8, 93
SgeI	CNNG	6 cut(s)	51, 96, 136, 161, 170, 177
Sse9I	AATT	2 cut(s)	25, 112
SstI	GAGCTC	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	148
TasI	AATT	2 cut(s)	25, 112
TscAI	CASTG	2 cut(s)	172, 181
TspRI	CASTG	2 cut(s)	172, 181
XapI	RAATTY	1 cut(s)	112
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.