Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0007780

Physical Location & Seq

Genomic Coordinates Forward (+)

8350106 .. 8352317

Gene Structure 2212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g07140.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGAACTCTGCGACTTTCAGCTCCACTTTTCTCCGAACCGGCTGCCTCCGCAAGGACTTGCAGGACGGGGTGAACAATTTGAAGGCCGATACGCGCAATGCAGGGAAGGTGTTTGTTAAATGTTATGTGAATACGAAAACCCAGAAAGCAGAAAAGGAAGTTCGGCTTGGTGTTCTTGGAGCCAGTGGTTACACTGGTTCTGAGATTGTTCGGCTTTTGGCAAACCATCCTCACTTTGGCATTACCTTGATGACGGCTGATAGAAAAGCTGGACAGTCAATAGGGTCGGTGTTTCCGCATTTAGTTTCCCAAGATCTACCAAAAATGGTTGCTATAAAGGATGCTGATTTTTCTGATGTGGATGCTGTTTTTTGTTGTTTGCCACATGGAACCACACAGGAAATTATCGAAGGCCTTCCCAAGAGTTTAAAGATTGTTGATCTGTCTGCTGACTTCCGTCTACGAGACATATCTGAGTATGAAGAATGGTATGGTCAGGCACATAGCGCACCAGAGTTGCAGAAAGAAGTTGTATATGGTTTGACAGAGATTTTGAGGGAGGAGATAAAAGGTGCGCGCGTAGTTGCGAACCCTGGTTGTTATCCAACTTCTGTTCAACTTCCACTTGTTCCATTGATCGATCAAGGCCAATCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0016020 GO:0031974 GO:0031981 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Semialdhyde_dh Semialdhyde_dhC

Protein Analysis

220

Amino Acids

24.02

Weight (kDa)

6.3

Isoelectric Point (pI)

32.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19940 AT2G19940
fragaria_vesca	FvH4_2g07021 FvH4_2g07021 FvH4_2g07021 FvH4_2g07021 FvH4_2g07021
malus_domestica	MD00G1050500.v1.1 MD10G1088500.v1.1
prunus_persica	Prupe.8G115600_v2.0.a1
pyrus_communis	pycom10g07140
rosa_chinensis	RchiOBHm_Chr6g0259381
rosa_laevigata	RLG00000014536
rosa_multiflora	Rmu_sc0012054.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246350 Rroxscaffold_7G00206640
rosa_rugosa	Rorug05G0588300 Rorug05G0588400 Rorug05G0588500
rosa_samantha	Rh6AG104000 Rh6BG097300 Rh6CG093300 Rh6DG087100
rosa_wichuraiana	Rw6G008990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	460
AccII	CGCG	3 cut(s)	94, 577, 579
AciI	CCGC	2 cut(s)	49, 296
AfiI	CCNNNNNNNGG	2 cut(s)	52, 236
AgsI	TTSAA	2 cut(s)	82, 617
AjnI	CCWGG	1 cut(s)	592
AjuI	GAANNNNNNNTTGG	2 cut(s)	150, 182
AluBI	AGCT	2 cut(s)	21, 269
AluI	AGCT	2 cut(s)	21, 269
Alw26I	GTCTC	1 cut(s)	459
AoxI	GGCC	3 cut(s)	84, 412, 646
ApeKI	GCWGC	1 cut(s)	42
ArsI	GACNNNNNNTTYG	2 cut(s)	535, 567
Asp700I	GAANNNNTTC	1 cut(s)	414
AspLEI	GCGC	4 cut(s)	96, 509, 577, 579
AsuHPI	GGTGA	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	1 cut(s)	234
BceAI	ACGGC	1 cut(s)	270
BcgI	CGANNNNNNTGC	2 cut(s)	24, 58
BciT130I	CCWGG	1 cut(s)	594
BcoDI	GTCTC	1 cut(s)	459
BglII	AGATCT	1 cut(s)	313
BisI	GCNGC	1 cut(s)	43
BlsI	GCNGC	1 cut(s)	44
Bme1390I	CCNGG	1 cut(s)	594
BmiI	GGNNCC	2 cut(s)	181, 391
BmrFI	CCNGG	1 cut(s)	594
BmsI	GCATC	2 cut(s)	331, 352
BoxI	GACNNNNGTC	1 cut(s)	456
Bsa29I	ATCGAT	1 cut(s)	639
BsaJI	CCNNGG	1 cut(s)	592
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 236
Bse118I	RCCGGY	1 cut(s)	38
Bse1I	ACTGG	2 cut(s)	183, 199
Bse3DI	GCAATG	1 cut(s)	103
BseBI	CCWGG	1 cut(s)	594
BseCI	ATCGAT	1 cut(s)	639
BseDI	CCNNGG	1 cut(s)	592
BseGI	GGATG	3 cut(s)	226, 346, 367
BseLI	CCNNNNNNNGG	2 cut(s)	52, 236
BseMI	GCAATG	1 cut(s)	103
BseMII	CTCAG	2 cut(s)	192, 465
BseNI	ACTGG	2 cut(s)	183, 199
BsePI	GCGCGC	1 cut(s)	575
BseRI	GAGGAG	1 cut(s)	575
BseXI	GCAGC	1 cut(s)	29
Bsh1236I	CGCG	3 cut(s)	94, 577, 579
BshFI	GGCC	3 cut(s)	86, 414, 648
BshVI	ATCGAT	1 cut(s)	639
BsiSI	CCGG	1 cut(s)	39
BslI	CCNNNNNNNGG	2 cut(s)	52, 236
BsmAI	GTCTC	1 cut(s)	459
BsnI	GGCC	3 cut(s)	86, 414, 648
Bsp143I	GATC	4 cut(s)	313, 439, 636, 640
BspACI	CCGC	2 cut(s)	49, 296
BspANI	GGCC	3 cut(s)	86, 414, 648
BspCNI	CTCAG	2 cut(s)	193, 466
BspDI	ATCGAT	1 cut(s)	639
BspFNI	CGCG	3 cut(s)	94, 577, 579
BspLI	GGNNCC	2 cut(s)	181, 391
BsrDI	GCAATG	1 cut(s)	103
BsrFI	RCCGGY	1 cut(s)	38
BsrI	ACTGG	2 cut(s)	183, 199
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	592
BssHII	GCGCGC	1 cut(s)	575
BssMI	GATC	4 cut(s)	313, 439, 636, 640
Bst2UI	CCWGG	1 cut(s)	594
Bst4CI	ACNGT	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	577
BstDEI	CTNAG	2 cut(s)	201, 474
BstENI	CCTNNNNNAGG	1 cut(s)	50
BstF5I	GGATG	3 cut(s)	226, 346, 367
BstFNI	CGCG	3 cut(s)	94, 577, 579
BstHHI	GCGC	4 cut(s)	96, 509, 577, 579
BstKTI	GATC	4 cut(s)	316, 442, 639, 643
BstMAI	GTCTC	1 cut(s)	459
BstMBI	GATC	4 cut(s)	313, 439, 636, 640
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 506
BstNI	CCWGG	1 cut(s)	594
BstPAI	GACNNNNGTC	1 cut(s)	456
BstSCI	CCNGG	1 cut(s)	592
BstUI	CGCG	3 cut(s)	94, 577, 579
BstV1I	GCAGC	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
Bsu15I	ATCGAT	1 cut(s)	639
BsuRI	GGCC	3 cut(s)	86, 414, 648
BsuTUI	ATCGAT	1 cut(s)	639
BtsCI	GGATG	3 cut(s)	226, 346, 367
BtsIMutI	CAGTG	2 cut(s)	190, 192
Cac8I	GCNNGC	1 cut(s)	577
CfoI	GCGC	4 cut(s)	96, 509, 577, 579
Cfr10I	RCCGGY	1 cut(s)	38
ClaI	ATCGAT	1 cut(s)	639
CviAII	CATG	1 cut(s)	386
DdeI	CTNAG	2 cut(s)	201, 474
DpnI	GATC	4 cut(s)	315, 441, 638, 642
DpnII	GATC	4 cut(s)	313, 439, 636, 640
DraI	TTTAAA	1 cut(s)	429
Eco147I	AGGCCT	1 cut(s)	414
EcoNI	CCTNNNNNAGG	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	592
FaeI	CATG	1 cut(s)	389
FaiI	YATR	9 cut(s)	126, 335, 387, 470, 480, 492, 504, 535, 537
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FatI	CATG	1 cut(s)	385
FblI	GTMKAC	1 cut(s)	460
Fnu4HI	GCNGC	1 cut(s)	43
FokI	GGATG	3 cut(s)	213, 353, 374
Fsp4HI	GCNGC	1 cut(s)	43
GlaI	GCGC	4 cut(s)	95, 508, 576, 578
GluI	GCNGC	1 cut(s)	43
HaeIII	GGCC	3 cut(s)	86, 414, 648
HapII	CCGG	1 cut(s)	39
HhaI	GCGC	4 cut(s)	96, 509, 577, 579
Hin1II	CATG	1 cut(s)	389
Hin6I	GCGC	4 cut(s)	94, 507, 575, 577
HinP1I	GCGC	4 cut(s)	94, 507, 575, 577
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	2 cut(s)	73, 461
Hpy188I	TCNGA	4 cut(s)	35, 202, 355, 475
Hpy8I	GTNNAC	2 cut(s)	73, 461
HpyAV	CCTTC	4 cut(s)	76, 100, 404, 425
HpyCH4III	ACNGT	1 cut(s)	276
HpyCH4V	TGCA	3 cut(s)	61, 101, 520
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 506
HpyF3I	CTNAG	2 cut(s)	201, 474
Hsp92II	CATG	1 cut(s)	389
HspAI	GCGC	4 cut(s)	94, 507, 575, 577
Kzo9I	GATC	4 cut(s)	313, 439, 636, 640
LmnI	GCTCC	2 cut(s)	26, 179
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	2 cut(s)	331, 352
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	4 cut(s)	315, 441, 638, 642
MboI	GATC	4 cut(s)	313, 439, 636, 640
MboII	GAAGA	1 cut(s)	494
MflI	RGATCY	1 cut(s)	313
MluCI	AATT	2 cut(s)	76, 402
MmeI	TCCRAC	1 cut(s)	629
MnlI	CCTC	4 cut(s)	56, 240, 549, 553
MroXI	GAANNNNTTC	1 cut(s)	414
MseI	TTAA	2 cut(s)	117, 428
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	1 cut(s)	594
MvaI	CCWGG	1 cut(s)	594
MvnI	CGCG	3 cut(s)	94, 577, 579
MwoI	GCNNNNNNNGC	2 cut(s)	48, 506
NdeII	GATC	4 cut(s)	313, 439, 636, 640
NlaIII	CATG	1 cut(s)	389
NlaIV	GGNNCC	2 cut(s)	181, 391
PauI	GCGCGC	1 cut(s)	575
PceI	AGGCCT	1 cut(s)	414
PdmI	GAANNNNTTC	1 cut(s)	414
PkrI	GCNGC	1 cut(s)	44
PshAI	GACNNNNGTC	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	592
PspGI	CCWGG	1 cut(s)	592
PspN4I	GGNNCC	2 cut(s)	181, 391
PsuI	RGATCY	1 cut(s)	313
PteI	GCGCGC	1 cut(s)	575
SaqAI	TTAA	2 cut(s)	117, 428
SatI	GCNGC	1 cut(s)	43
Sau3AI	GATC	4 cut(s)	313, 439, 636, 640
ScrFI	CCNGG	1 cut(s)	594
SetI	ASST	5 cut(s)	23, 111, 248, 271, 574
SfaNI	GCATC	2 cut(s)	331, 352
Sse9I	AATT	2 cut(s)	76, 402
SseBI	AGGCCT	1 cut(s)	414
SsiI	CCGC	2 cut(s)	49, 296
StuI	AGGCCT	1 cut(s)	414
StyD4I	CCNGG	1 cut(s)	592
TaaI	ACNGT	1 cut(s)	276
TaqI	TCGA	2 cut(s)	408, 639
TasI	AATT	2 cut(s)	76, 402
Tru1I	TTAA	2 cut(s)	117, 428
Tru9I	TTAA	2 cut(s)	117, 428
TscAI	CASTG	2 cut(s)	190, 199
TseI	GCWGC	1 cut(s)	42
TspDTI	ATGAA	2 cut(s)	17, 495
TspGWI	ACGGA	1 cut(s)	446
TspRI	CASTG	2 cut(s)	190, 199
XagI	CCTNNNNNAGG	1 cut(s)	50
XcmI	CCANNNNNNNNNTGG	1 cut(s)	233
XmiI	GTMKAC	1 cut(s)	460
XmnI	GAANNNNTTC	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.