Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007780

Physical Location & Seq

Genomic Coordinates Forward (+)

39446186 .. 39457997

Gene Structure 11812 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00246350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGAAGGATGGACAGAAAAGGAAGTTCGCATTGGTGTTCTTGGAGCCAGTGGCTACACTGGTTCTGAGATTGTTCGGCTGCTGGCAAATCATTCTCACTTTGGCATTACCTTAATGACTGCTGATAGAAAAGCTGGACAGTCAATTGCATCGGTGTTTCCTCATCTAATTTCCCAAAATCTACCAAGGATGGTTGCTATCAAGGATGCTGATTTTTCTGATGTGGACCGTGCCATTGAGGCAGAAGATGAGAGAACAAGGTTGGTTGATATGTTTGGAGATGAAGAAAAGGGGAAGCTTTTTGTGAAATGTTCTGTGAATTCAAAAACCCGAAAGCAGAAAAGGAAGTTCGCATTGGGTGTTCTTGGAGCCGGTGGCTACACCGGTTCCGAGATTGTTCGGCTGCTGGCAAATCATTCTCACTTTGGCATTACCTTAATGACTGCTGATAGAAAAGCTGGACAGTCAATTGCATCGGTGTTTCCTCATCTAATTTCCCAAAATCTGCCAAGGATGGTTGCTATCAAGGATGCTGATTTTTCTGATGTGGACCGTGCCATTGAGGCAGAAGATGAGAGAACAAGGTTGGTTGATATGTTTGGAGATGAAGAAAAGGCGGGAGTTTTGCAGGGTTTGAAGAATCAGCGCAGTGATCGTGCGGATCAGAATTCTGTTGGATTGAAGAAGTTGATATTCATTCATATTCGACCAGTTCTATCAAACTTTATCTTGCTAATGGATATGACAGGTGAGTTGGAGGAGGAATTCTCAACCAGATTAGTCAATAGTTTGGAGAATCTTATCCTCAAAGAAGGACCAGAGACTGTGCAGGAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0016020 GO:0031974 GO:0031981 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Semialdhyde_dh Semialdhyde_dhC

Protein Analysis

279

Amino Acids

30.96

Weight (kDa)

5.73

Isoelectric Point (pI)

25.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Semialdhyde_dh	PF01118	10 - 81	2.2e-12	Semialdehyde dehydrogenase, NAD binding domain
Semialdhyde_dh	PF01118	120 - 189	8.1e-11	Semialdehyde dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19940 AT2G19940
fragaria_vesca	FvH4_2g07021 FvH4_2g07021 FvH4_2g07021 FvH4_2g07021 FvH4_2g07021
malus_domestica	MD00G1050500.v1.1 MD10G1088500.v1.1
prunus_persica	Prupe.8G115600_v2.0.a1
pyrus_communis	pycom10g07140
rosa_chinensis	RchiOBHm_Chr6g0259381
rosa_laevigata	RLG00000014536
rosa_multiflora	Rmu_sc0012054.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246350 Rroxscaffold_7G00206640
rosa_rugosa	Rorug05G0588300 Rorug05G0588400 Rorug05G0588500
rosa_samantha	Rh6AG104000 Rh6BG097300 Rh6CG093300 Rh6DG087100
rosa_wichuraiana	Rw6G008990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	617, 659
AclWI	GGATC	1 cut(s)	669
AcsI	RAATTY	3 cut(s)	319, 667, 764
AgeI	ACCGGT	1 cut(s)	383
AgsI	TTSAA	3 cut(s)	324, 637, 682
AjuI	GAANNNNNNNTTGG	4 cut(s)	15, 47, 338, 370
AluBI	AGCT	3 cut(s)	134, 298, 458
AluI	AGCT	3 cut(s)	134, 298, 458
Alw26I	GTCTC	1 cut(s)	815
AlwI	GGATC	1 cut(s)	669
AlwNI	CAGNNNCTG	1 cut(s)	824
ApeKI	GCWGC	2 cut(s)	79, 403
ApoI	RAATTY	3 cut(s)	319, 667, 764
AsiGI	ACCGGT	1 cut(s)	383
AspLEI	GCGC	1 cut(s)	648
AspS9I	GGNCC	3 cut(s)	226, 550, 815
AsuHPI	GGTGA	1 cut(s)	761
AvaII	GGWCC	3 cut(s)	226, 550, 815
BbvI	GCAGC	2 cut(s)	66, 390
BccI	CCATC	3 cut(s)	3, 184, 508
BcoDI	GTCTC	1 cut(s)	815
BglI	GCCNNNNNGGC	2 cut(s)	239, 563
BisI	GCNGC	2 cut(s)	80, 404
BlsI	GCNGC	2 cut(s)	81, 405
Bme18I	GGWCC	3 cut(s)	226, 550, 815
BmgT120I	GGNCC	3 cut(s)	226, 550, 815
BmiI	GGNNCC	3 cut(s)	46, 370, 388
BmsI	GCATC	4 cut(s)	158, 196, 482, 520
BplI	GAGNNNNNCTC	2 cut(s)	752, 784
BsaJI	CCNNGG	2 cut(s)	185, 509
BsaWI	WCCGGW	1 cut(s)	383
Bse118I	RCCGGY	2 cut(s)	371, 383
Bse1I	ACTGG	3 cut(s)	48, 64, 710
BseDI	CCNNGG	2 cut(s)	185, 509
BseGI	GGATG	5 cut(s)	14, 195, 211, 519, 535
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	3 cut(s)	48, 64, 710
BseRI	GAGGAG	1 cut(s)	773
BseXI	GCAGC	2 cut(s)	66, 390
BshTI	ACCGGT	1 cut(s)	383
BsiSI	CCGG	2 cut(s)	372, 384
BsmAI	GTCTC	1 cut(s)	815
Bsp143I	GATC	2 cut(s)	652, 661
BspACI	CCGC	2 cut(s)	617, 659
BspCNI	CTCAG	1 cut(s)	58
BspLI	GGNNCC	3 cut(s)	46, 370, 388
BspPI	GGATC	1 cut(s)	669
BsrFI	RCCGGY	2 cut(s)	371, 383
BsrI	ACTGG	3 cut(s)	48, 64, 710
BssAI	RCCGGY	2 cut(s)	371, 383
BssECI	CCNNGG	2 cut(s)	185, 509
BssMI	GATC	2 cut(s)	652, 661
BssT1I	CCWWGG	2 cut(s)	185, 509
Bst4CI	ACNGT	5 cut(s)	141, 230, 465, 554, 826
BstC8I	GCNNGC	2 cut(s)	84, 408
BstDEI	CTNAG	1 cut(s)	66
BstF5I	GGATG	5 cut(s)	14, 195, 211, 519, 535
BstHHI	GCGC	1 cut(s)	648
BstKTI	GATC	2 cut(s)	655, 664
BstMAI	GTCTC	1 cut(s)	815
BstMBI	GATC	2 cut(s)	652, 661
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 563
BstV1I	GCAGC	2 cut(s)	66, 390
BtsCI	GGATG	5 cut(s)	14, 195, 211, 519, 535
BtsI	GCAGTG	1 cut(s)	655
BtsIMutI	CAGTG	3 cut(s)	55, 57, 655
Cac8I	GCNNGC	2 cut(s)	84, 408
CaiI	CAGNNNCTG	1 cut(s)	824
CfoI	GCGC	1 cut(s)	648
Cfr10I	RCCGGY	2 cut(s)	371, 383
Cfr13I	GGNCC	3 cut(s)	226, 550, 815
CspAI	ACCGGT	1 cut(s)	383
CviJI	RGCY	9 cut(s)	47, 54, 79, 134, 298, 371, 378, 403, 458
CviKI_1	RGCY	9 cut(s)	47, 54, 79, 134, 298, 371, 378, 403, 458
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	2 cut(s)	654, 663
DpnII	GATC	2 cut(s)	652, 661
Eco130I	CCWWGG	2 cut(s)	185, 509
Eco47I	GGWCC	3 cut(s)	226, 550, 815
EcoRI	GAATTC	3 cut(s)	319, 667, 764
EcoT14I	CCWWGG	2 cut(s)	185, 509
ErhI	CCWWGG	2 cut(s)	185, 509
FaiI	YATR	4 cut(s)	272, 596, 702, 743
FauI	CCCGC	1 cut(s)	610
Fnu4HI	GCNGC	2 cut(s)	80, 404
FokI	GGATG	5 cut(s)	21, 202, 218, 526, 542
Fsp4HI	GCNGC	2 cut(s)	80, 404
GlaI	GCGC	1 cut(s)	647
GluI	GCNGC	2 cut(s)	80, 404
HapII	CCGG	2 cut(s)	372, 384
HhaI	GCGC	1 cut(s)	648
Hin6I	GCGC	1 cut(s)	646
HinP1I	GCGC	1 cut(s)	646
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	2 cut(s)	640, 796
HpaII	CCGG	2 cut(s)	372, 384
HphI	GGTGA	1 cut(s)	761
Hpy166II	GTNNAC	2 cut(s)	226, 550
Hpy188I	TCNGA	5 cut(s)	67, 220, 391, 544, 666
Hpy8I	GTNNAC	2 cut(s)	226, 550
HpyAV	CCTTC	1 cut(s)	806
HpyCH4III	ACNGT	5 cut(s)	141, 230, 465, 554, 826
HpyCH4V	TGCA	4 cut(s)	149, 473, 628, 829
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 563
HpyF3I	CTNAG	1 cut(s)	66
HspAI	GCGC	1 cut(s)	646
Kzo9I	GATC	2 cut(s)	652, 661
LmnI	GCTCC	2 cut(s)	44, 368
Lsp1109I	GCAGC	2 cut(s)	66, 390
LweI	GCATC	4 cut(s)	158, 196, 482, 520
MalI	GATC	2 cut(s)	654, 663
MboI	GATC	2 cut(s)	652, 661
MboII	GAAGA	6 cut(s)	257, 296, 581, 620, 649, 694
MfeI	CAATTG	2 cut(s)	144, 468
MluCI	AATT	7 cut(s)	144, 168, 319, 468, 492, 667, 764
MmeI	TCCRAC	2 cut(s)	655, 735
MnlI	CCTC	8 cut(s)	171, 232, 495, 556, 751, 754, 815, 826
MseI	TTAA	2 cut(s)	113, 437
MspI	CCGG	2 cut(s)	372, 384
MunI	CAATTG	2 cut(s)	144, 468
MwoI	GCNNNNNNNGC	2 cut(s)	239, 563
NdeII	GATC	2 cut(s)	652, 661
NlaIV	GGNNCC	3 cut(s)	46, 370, 388
PfeI	GAWTC	2 cut(s)	640, 796
PinAI	ACCGGT	1 cut(s)	383
PkrI	GCNGC	2 cut(s)	81, 405
PspN4I	GGNNCC	3 cut(s)	46, 370, 388
PspPI	GGNCC	3 cut(s)	226, 550, 815
PstNI	CAGNNNCTG	1 cut(s)	824
SaqAI	TTAA	2 cut(s)	113, 437
SatI	GCNGC	2 cut(s)	80, 404
Sau3AI	GATC	2 cut(s)	652, 661
Sau96I	GGNCC	3 cut(s)	226, 550, 815
SetI	ASST	9 cut(s)	113, 136, 263, 300, 437, 460, 587, 751, 837
SfaNI	GCATC	4 cut(s)	158, 196, 482, 520
SinI	GGWCC	3 cut(s)	226, 550, 815
Sse9I	AATT	7 cut(s)	144, 168, 319, 468, 492, 667, 764
SsiI	CCGC	2 cut(s)	617, 659
StyI	CCWWGG	2 cut(s)	185, 509
TaaI	ACNGT	5 cut(s)	141, 230, 465, 554, 826
TaqI	TCGA	1 cut(s)	706
TasI	AATT	7 cut(s)	144, 168, 319, 468, 492, 667, 764
TfiI	GAWTC	2 cut(s)	640, 796
Tru1I	TTAA	2 cut(s)	113, 437
Tru9I	TTAA	2 cut(s)	113, 437
TscAI	CASTG	3 cut(s)	55, 64, 655
TseI	GCWGC	2 cut(s)	79, 403
TspDTI	ATGAA	4 cut(s)	297, 621, 685, 689
TspRI	CASTG	3 cut(s)	55, 64, 655
VpaK11BI	GGWCC	3 cut(s)	226, 550, 815
XapI	RAATTY	3 cut(s)	319, 667, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.