Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0007780

Physical Location & Seq

Genomic Coordinates Forward (+)

14283568 .. 14295014

Gene Structure 11447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G115600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGAGCTCTGCAACTTTCAGCTCCAATTTTCTTCGAACTGGGTGCCTCAGGAAGGACGGGTTTAACAATCCAAAGGATAAGAAGCGAAATGTAGGGAAGGTGTTTGTTAAATGTTCCGTGAATACAAAAACCCAGAAGGCAGAAAAGGAAGTTCGACTTGGTGTTCTTGGAGCCAGTGGTTACACTGGTTCTGAGATTGTTCGGCTGCTGGCAAACCATCCTCACTTTGGCATTACCTTGATGACTGCTGATAGAAAAGCCGGACAGTCGATTGGATCGGTGTTTCCTCATCTGGTTTCCCAAAATCTGCCAAAAATGGTTGCTGTCAAGGATGCTGATTTTTCTGATGTTGATGCTGTATTTTGTTGTTTACCACACGGAACCACACAGGAAATTATCAAAGGCCTTCCCAAGAGTTTAAAGATTGTTGATCTGTCTGCTGACTTCCGTCTACGAGATATCTCTGAGTATGAAGAATGGTACGGTCACGCACATAGAGCACCAGAATTGCAGAAAGAAGCTGTATATGGTTTGACGGAGATTTCAAGGGAGGAGGTAAAAAGTGCACGCCTAGTTGCTAACCCTGGTTGCTATCCAACTTCTGTTCAAATTCCCCTTGTTCCACTGATTAAGGCTAATCTTGTTCAACCTAAAAATATTATTATTGACTCAAAGTCTGGTGTTAGCGGAGCAGGACGTGGTGCCAAGGAGGCAAATTTGTACACTGAAATAGCTGAAGGCATATATTCTTATGGCGTTACCCGTCATCGCCATGTTCCGGAAATTGAGCAGGGACTATCTGATGCTGCAAATTCAAAAGTAACTGTTAGTTTTACTCCACATCTAATGCCAATGAGCCGTGGTATGCAATCAACTATCTATGTGGAACTGGCTCCGGGGGTAGAAGTCAAGGACTTACGCCAACAGTTGAAGTTATCCTTTGAGGATGAAGACTTTGTGGTTTTGTTGGATGAAGGAATTGTCCCTCGCACTCATAATACTCGAGGATCTAATTATTGTTTCATCAATGTCTTTCCTGATCGGATTCCCGGAAGAGCAATAATAATTTCTGTTATTGATAATCTTGTCAAGGGAGCTTCAGGTCAAGCCTTACAGAATCTTAATGTGATGATGGGGTTCCCAGAAAGCACAGGGCTTCTTTATCAGCCCTTATTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0016020 GO:0031974 GO:0031981 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Semialdhyde_dh Semialdhyde_dhC

Protein Analysis

394

Amino Acids

43.13

Weight (kDa)

8.59

Isoelectric Point (pI)

32.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19940 AT2G19940
fragaria_vesca	FvH4_2g07021 FvH4_2g07021 FvH4_2g07021 FvH4_2g07021 FvH4_2g07021
malus_domestica	MD00G1050500.v1.1 MD10G1088500.v1.1
prunus_persica	Prupe.8G115600_v2.0.a1
pyrus_communis	pycom10g07140
rosa_chinensis	RchiOBHm_Chr6g0259381
rosa_laevigata	RLG00000014536
rosa_multiflora	Rmu_sc0012054.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246350 Rroxscaffold_7G00206640
rosa_rugosa	Rorug05G0588300 Rorug05G0588400 Rorug05G0588500
rosa_samantha	Rh6AG104000 Rh6BG097300 Rh6CG093300 Rh6DG087100
rosa_wichuraiana	Rw6G008990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	42, 701
AccI	GTMKAC	1 cut(s)	451
AccIII	TCCGGA	1 cut(s)	778
AciI	CCGC	1 cut(s)	687
AclWI	GGATC	2 cut(s)	283, 1015
AcsI	RAATTY	3 cut(s)	609, 715, 811
AcuI	CTGAAG	2 cut(s)	756, 1083
AfaI	GTAC	2 cut(s)	482, 722
AfiI	CCNNNNNNNGG	3 cut(s)	52, 227, 778
AgsI	TTSAA	5 cut(s)	546, 608, 647, 816, 931
AhdI	GACNNNNNGTC	1 cut(s)	673
AjiI	CACGTC	1 cut(s)	698
AjnI	CCWGG	1 cut(s)	583
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
AluBI	AGCT	5 cut(s)	6, 21, 521, 734, 1097
AluI	AGCT	5 cut(s)	6, 21, 521, 734, 1097
Alw21I	GWGCWC	3 cut(s)	8, 502, 568
Alw44I	GTGCAC	1 cut(s)	564
AlwI	GGATC	2 cut(s)	283, 1015
Ama87I	CYCGRG	1 cut(s)	1002
Aor13HI	TCCGGA	1 cut(s)	778
AoxI	GGCC	1 cut(s)	403
ApaLI	GTGCAC	1 cut(s)	564
ApeKI	GCWGC	2 cut(s)	205, 806
ApoI	RAATTY	3 cut(s)	609, 715, 811
AsuC2I	CCSGG	2 cut(s)	897, 1050
AsuII	TTCGAA	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	1002
AxyI	CCTNAGG	1 cut(s)	47
BaeGI	GKGCMC	1 cut(s)	568
BanI	GGYRCC	2 cut(s)	42, 701
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	957
Bbv12I	GWGCWC	3 cut(s)	8, 502, 568
BbvI	GCAGC	2 cut(s)	192, 793
BccI	CCATC	2 cut(s)	225, 1126
BceAI	ACGGC	1 cut(s)	843
BcgI	CGANNNNNNTGC	2 cut(s)	24, 58
BciT130I	CCWGG	1 cut(s)	585
BcnI	CCSGG	2 cut(s)	897, 1050
BfaI	CTAG	1 cut(s)	572
BglI	GCCNNNNNGGC	1 cut(s)	710
BisI	GCNGC	2 cut(s)	206, 807
BlsI	GCNGC	2 cut(s)	207, 808
Bme1390I	CCNGG	3 cut(s)	585, 897, 1050
BmeRI	GACNNNNNGTC	1 cut(s)	673
BmeT110I	CYCGRG	1 cut(s)	1002
BmgBI	CACGTC	1 cut(s)	698
BmiI	GGNNCC	6 cut(s)	44, 172, 382, 703, 894, 1139
BmrFI	CCNGG	3 cut(s)	585, 897, 1050
BmrI	ACTGGG	1 cut(s)	48
BmsI	GCATC	3 cut(s)	322, 343, 793
BmuI	ACTGGG	1 cut(s)	48
BoxI	GACNNNNGTC	1 cut(s)	447
BpiI	GAAGAC	1 cut(s)	957
Bpu14I	TTCGAA	1 cut(s)	34
BpuMI	CCSGG	2 cut(s)	897, 1050
BsaJI	CCNNGG	4 cut(s)	583, 705, 859, 896
BsaWI	WCCGGW	1 cut(s)	778
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 227, 778
Bse1I	ACTGG	4 cut(s)	43, 174, 190, 894
Bse21I	CCTNAGG	1 cut(s)	47
BseAI	TCCGGA	1 cut(s)	778
BseBI	CCWGG	1 cut(s)	585
BseDI	CCNNGG	4 cut(s)	583, 705, 859, 896
BseGI	GGATG	4 cut(s)	217, 337, 952, 976
BseLI	CCNNNNNNNGG	3 cut(s)	52, 227, 778
BseMII	CTCAG	3 cut(s)	61, 183, 456
BseNI	ACTGG	4 cut(s)	43, 174, 190, 894
BseRI	GAGGAG	1 cut(s)	566
BseSI	GKGCMC	1 cut(s)	568
BseXI	GCAGC	2 cut(s)	192, 793
BshFI	GGCC	1 cut(s)	405
BshNI	GGYRCC	2 cut(s)	42, 701
BsiHKAI	GWGCWC	3 cut(s)	8, 502, 568
BsiHKCI	CYCGRG	1 cut(s)	1002
BsiSI	CCGG	4 cut(s)	261, 779, 896, 1050
BslFI	GGGAC	2 cut(s)	807, 968
BslI	CCNNNNNNNGG	3 cut(s)	52, 227, 778
BsmFI	GGGAC	2 cut(s)	807, 968
BsnI	GGCC	1 cut(s)	405
BsoBI	CYCGRG	1 cut(s)	1002
Bsp119I	TTCGAA	1 cut(s)	34
Bsp1286I	GDGCHC	3 cut(s)	8, 502, 568
Bsp13I	TCCGGA	1 cut(s)	778
Bsp1407I	TGTACA	1 cut(s)	720
Bsp143I	GATC	4 cut(s)	275, 430, 1007, 1039
BspACI	CCGC	1 cut(s)	687
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	3 cut(s)	60, 184, 457
BspEI	TCCGGA	1 cut(s)	778
BspLI	GGNNCC	6 cut(s)	44, 172, 382, 703, 894, 1139
BspPI	GGATC	2 cut(s)	283, 1015
BspQI	GCTCTTC	1 cut(s)	1048
BspT104I	TTCGAA	1 cut(s)	34
BspT107I	GGYRCC	2 cut(s)	42, 701
BsrGI	TGTACA	1 cut(s)	720
BsrI	ACTGG	4 cut(s)	43, 174, 190, 894
BssECI	CCNNGG	4 cut(s)	583, 705, 859, 896
BssMI	GATC	4 cut(s)	275, 430, 1007, 1039
BssT1I	CCWWGG	1 cut(s)	705
Bst2UI	CCWGG	1 cut(s)	585
Bst4CI	ACNGT	4 cut(s)	267, 485, 826, 927
Bst6I	CTCTTC	1 cut(s)	1048
BstAUI	TGTACA	1 cut(s)	720
BstBI	TTCGAA	1 cut(s)	34
BstC8I	GCNNGC	2 cut(s)	210, 568
BstDEI	CTNAG	3 cut(s)	47, 192, 465
BstDSI	CCRYGG	1 cut(s)	859
BstENI	CCTNNNNNAGG	1 cut(s)	50
BstF5I	GGATG	4 cut(s)	217, 337, 952, 976
BstKTI	GATC	4 cut(s)	278, 433, 1010, 1042
BstMBI	GATC	4 cut(s)	275, 430, 1007, 1039
BstMWI	GCNNNNNNNGC	2 cut(s)	497, 710
BstNI	CCWGG	1 cut(s)	585
BstPAI	GACNNNNGTC	1 cut(s)	447
BstSCI	CCNGG	3 cut(s)	583, 895, 1048
BstSLI	GKGCMC	1 cut(s)	568
BstV1I	GCAGC	2 cut(s)	192, 793
BstV2I	GAAGAC	1 cut(s)	957
BstX2I	RGATCY	1 cut(s)	1007
BstYI	RGATCY	1 cut(s)	1007
Bsu36I	CCTNAGG	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	405
BtgI	CCRYGG	1 cut(s)	859
BtgZI	GCGATG	1 cut(s)	752
BtrI	CACGTC	1 cut(s)	698
BtsCI	GGATG	4 cut(s)	217, 337, 952, 976
BtsIMutI	CAGTG	4 cut(s)	181, 183, 623, 723
Cac8I	GCNNGC	2 cut(s)	210, 568
Csp6I	GTAC	2 cut(s)	481, 721
CviAII	CATG	1 cut(s)	773
CviQI	GTAC	2 cut(s)	481, 721
DdeI	CTNAG	3 cut(s)	47, 192, 465
DpnI	GATC	4 cut(s)	277, 432, 1009, 1041
DpnII	GATC	4 cut(s)	275, 430, 1007, 1039
DraI	TTTAAA	1 cut(s)	420
DriI	GACNNNNNGTC	1 cut(s)	673
Eam1104I	CTCTTC	1 cut(s)	1048
Eam1105I	GACNNNNNGTC	1 cut(s)	673
EarI	CTCTTC	1 cut(s)	1048
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	705
Eco147I	AGGCCT	1 cut(s)	405
Eco24I	GRGCYC	1 cut(s)	8
Eco32I	GATATC	1 cut(s)	460
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	2 cut(s)	756, 1083
Eco81I	CCTNAGG	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	1002
EcoICRI	GAGCTC	1 cut(s)	6
EcoNI	CCTNNNNNAGG	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	583
EcoRV	GATATC	1 cut(s)	460
EcoT14I	CCWWGG	1 cut(s)	705
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	705
FaeI	CATG	1 cut(s)	776
FalI	AAGNNNNNCTT	4 cut(s)	141, 173, 923, 955
FaqI	GGGAC	2 cut(s)	807, 968
FatI	CATG	1 cut(s)	772
FblI	GTMKAC	1 cut(s)	451
Fnu4HI	GCNGC	2 cut(s)	206, 807
FokI	GGATG	4 cut(s)	204, 344, 959, 983
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	206, 807
FspBI	CTAG	1 cut(s)	572
GluI	GCNGC	2 cut(s)	206, 807
HaeIII	GGCC	1 cut(s)	405
HapII	CCGG	4 cut(s)	261, 779, 896, 1050
Hin1II	CATG	1 cut(s)	776
HinfI	GANTC	3 cut(s)	668, 1045, 1117
HpaII	CCGG	4 cut(s)	261, 779, 896, 1050
Hpy166II	GTNNAC	4 cut(s)	371, 452, 566, 723
Hpy188I	TCNGA	5 cut(s)	193, 346, 466, 802, 1044
Hpy188III	TCNNGA	3 cut(s)	49, 779, 1037
Hpy8I	GTNNAC	4 cut(s)	371, 452, 566, 723
HpyAV	CCTTC	6 cut(s)	46, 91, 130, 416, 731, 968
HpyCH4III	ACNGT	4 cut(s)	267, 485, 826, 927
HpyCH4IV	ACGT	1 cut(s)	697
HpyCH4V	TGCA	5 cut(s)	11, 511, 566, 809, 868
HpyF10VI	GCNNNNNNNGC	2 cut(s)	497, 710
HpyF3I	CTNAG	3 cut(s)	47, 192, 465
HpySE526I	ACGT	1 cut(s)	697
Hsp92II	CATG	1 cut(s)	776
Kpn2I	TCCGGA	1 cut(s)	778
Kzo9I	GATC	4 cut(s)	275, 430, 1007, 1039
LguI	GCTCTTC	1 cut(s)	1048
LmnI	GCTCC	5 cut(s)	26, 170, 689, 898, 1094
Lsp1109I	GCAGC	2 cut(s)	192, 793
LweI	GCATC	3 cut(s)	322, 343, 793
MaeI	CTAG	1 cut(s)	572
MaeII	ACGT	1 cut(s)	697
MaeIII	GTNAC	4 cut(s)	179, 485, 757, 820
MalI	GATC	4 cut(s)	277, 432, 1009, 1041
MboI	GATC	4 cut(s)	275, 430, 1007, 1039
MboII	GAAGA	4 cut(s)	23, 485, 962, 1065
MflI	RGATCY	1 cut(s)	1007
MhlI	GDGCHC	3 cut(s)	8, 502, 568
MlyI	GAGTC	1 cut(s)	662
MmeI	TCCRAC	2 cut(s)	620, 948
MnlI	CCTC	9 cut(s)	56, 231, 297, 544, 547, 703, 937, 996, 998
MroI	TCCGGA	1 cut(s)	778
MseI	TTAA	5 cut(s)	63, 108, 419, 630, 1122
MslI	CAYNNNNRTG	1 cut(s)	771
MspI	CCGG	4 cut(s)	261, 779, 896, 1050
MspR9I	CCNGG	3 cut(s)	585, 897, 1050
MvaI	CCWGG	1 cut(s)	585
MwoI	GCNNNNNNNGC	2 cut(s)	497, 710
NciI	CCSGG	2 cut(s)	897, 1050
NdeII	GATC	4 cut(s)	275, 430, 1007, 1039
NlaIII	CATG	1 cut(s)	776
NlaIV	GGNNCC	6 cut(s)	44, 172, 382, 703, 894, 1139
NmuCI	GTSAC	1 cut(s)	485
NspV	TTCGAA	1 cut(s)	34
PaeR7I	CTCGAG	1 cut(s)	1002
PceI	AGGCCT	1 cut(s)	405
PciSI	GCTCTTC	1 cut(s)	1048
PfeI	GAWTC	2 cut(s)	1045, 1117
PfoI	TCCNGGA	1 cut(s)	1048
PkrI	GCNGC	2 cut(s)	207, 808
PleI	GAGTC	1 cut(s)	662
PpsI	GAGTC	1 cut(s)	662
PshAI	GACNNNNGTC	1 cut(s)	447
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	583
PspGI	CCWGG	1 cut(s)	583
PspN4I	GGNNCC	6 cut(s)	44, 172, 382, 703, 894, 1139
PspXI	VCTCGAGB	1 cut(s)	1002
PsuI	RGATCY	1 cut(s)	1007
RsaI	GTAC	2 cut(s)	482, 722
RsaNI	GTAC	2 cut(s)	481, 721
RseI	CAYNNNNRTG	1 cut(s)	771
SacI	GAGCTC	1 cut(s)	8
SapI	GCTCTTC	1 cut(s)	1048
SaqAI	TTAA	5 cut(s)	63, 108, 419, 630, 1122
SatI	GCNGC	2 cut(s)	206, 807
Sau3AI	GATC	4 cut(s)	275, 430, 1007, 1039
SchI	GAGTC	1 cut(s)	662
ScrFI	CCNGG	3 cut(s)	585, 897, 1050
SduI	GDGCHC	3 cut(s)	8, 502, 568
SfaNI	GCATC	3 cut(s)	322, 343, 793
Sfr274I	CTCGAG	1 cut(s)	1002
SfuI	TTCGAA	1 cut(s)	34
SlaI	CTCGAG	1 cut(s)	1002
SmiMI	CAYNNNNRTG	1 cut(s)	771
SmlI	CTYRAG	1 cut(s)	1002
SmoI	CTYRAG	1 cut(s)	1002
SseBI	AGGCCT	1 cut(s)	405
SsiI	CCGC	1 cut(s)	687
SspI	AATATT	1 cut(s)	658
SspMI	CTAG	1 cut(s)	572
SstI	GAGCTC	1 cut(s)	8
StuI	AGGCCT	1 cut(s)	405
StyD4I	CCNGG	3 cut(s)	583, 895, 1048
StyI	CCWWGG	1 cut(s)	705
TaaI	ACNGT	4 cut(s)	267, 485, 826, 927
TaiI	ACGT	1 cut(s)	700
TaqI	TCGA	4 cut(s)	34, 154, 269, 1003
TatI	WGTACW	1 cut(s)	720
TfiI	GAWTC	2 cut(s)	1045, 1117
Tru1I	TTAA	5 cut(s)	63, 108, 419, 630, 1122
Tru9I	TTAA	5 cut(s)	63, 108, 419, 630, 1122
TscAI	CASTG	4 cut(s)	181, 190, 630, 730
TseFI	GTSAC	1 cut(s)	485
TseI	GCWGC	2 cut(s)	205, 806
Tsp45I	GTSAC	1 cut(s)	485
TspDTI	ATGAA	4 cut(s)	486, 963, 987, 1012
TspGWI	ACGGA	4 cut(s)	106, 393, 437, 551
TspRI	CASTG	4 cut(s)	181, 190, 630, 730
VneI	GTGCAC	1 cut(s)	564
XagI	CCTNNNNNAGG	1 cut(s)	50
XapI	RAATTY	3 cut(s)	609, 715, 811
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224
XhoI	CTCGAG	1 cut(s)	1002
XmiI	GTMKAC	1 cut(s)	451
XspI	CTAG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.