AT2G20230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011210
Physical Location & Seq
Forward (+)
8725541 .. 8727742
2202 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G20230.1

Sequence Viewer

Length: 813 bp
ATGCGGCGTAATTGCTGCCATGTTTCATTTGCTTCAACCCTCAAGATCCTTAATTTTGTCCAAGCTTTCATTGGTGTTTCGATCATTATCTACTCCATATGGATGCTCCATGAATACAGCCGTCACCTTCCCGTGGACCCGCCTCCGTCAGCTTCATCAAGCTCCGGAACCGAGATCGCTACTAGTGTATCTGAGCCCTTGAAGAATCCTATTGATTTTGTGGCGAGTATCATTCTCGGGTCTAATGGTGGTGATCATGGGTTTAACCTACGCTCGTTGGACCTTCCTGCTCCATGGTTCATCTACTCTTTCATGGCGGTTGGTATATTGGTCTGCATTGTTACCTTCATTGGTTTCATAGCAGCTGAAGCAATCAATGGCTGTTGCTTGTGTTTTTACTCTATTCTCAAAACTCTGCTCATTCTACTTGAAGCTGCACTTGTTGCATACATCGCTATTGACCGTCACTGGGAAAAGGATCTTCCGTATGATCCAACTGGAGAACTTAGTAGTCTTAGGGCTTTCATTGAAGAAAACATCGATATATGCAAATGGGTGGGGATTGCTGTGGTAGCAGTCCAGCTACTGTCATTGCTACTAGCCATGGTTCTCAGAGCGATGGTTTCAACCCCGAAACCCGAACTTGACGAAGAGGAAGATGATGAGAACCCAAGGAGTAGAACTTGGGACCCACTTCTTGGTCCGCAAGGAAACCAAGCGCCTGCTGGCTCAAGCAAGATTGAAAACTGGAGCTCCCGAATCAGAGAAAAGTATGGTTTGAACCAGAGTCCACCGGTGAACCCGAAAGGTTGA

Protein Analysis

270

Amino Acids

29.72

Weight (kDa)

5.14

Isoelectric Point (pI)

49.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tetraspanin PF00335 14 - 157 1.9e-09 Tetraspanin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20230 AT4G28770 AT4G28770
fragaria_vesca FvH4_2g19890 FvH4_2g19890
malus_domestica MD05G1183500.v1.1 MD10G1171300.v1.1
prunus_persica Prupe.8G209700_v2.0.a1
pyrus_communis pycom05g16850 pycom10g14770
rosa_chinensis RchiOBHm_Chr6g0285581
rosa_laevigata RLG00000012625
rosa_multiflora Rmu_sc0012495.1_g000001
rosa_roxburghii Rroxscaffold_7G00182930
rosa_rugosa Rorug06G0175800
rosa_samantha Rh6AG287300 Rh6BG288500 Rh6CG289700 Rh6DG282500
rosa_wichuraiana Rw6G024700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 698
AccIII TCCGGA 1 cut(s) 164
AciI CCGC 4 cut(s) 4, 140, 317, 704
AclWI GGATC 3 cut(s) 40, 485, 486
AcuI CTGAAG 1 cut(s) 387
AfiI CCNNNNNNNGG 3 cut(s) 133, 469, 698
AgeI ACCGGT 1 cut(s) 793
AgsI TTSAA 7 cut(s) 36, 202, 431, 530, 627, 743, 781
AhlI ACTAGT 1 cut(s) 182
AluBI AGCT 7 cut(s) 65, 152, 162, 365, 434, 583, 753
AluI AGCT 7 cut(s) 65, 152, 162, 365, 434, 583, 753
Alw21I GWGCWC 1 cut(s) 755
AlwI GGATC 3 cut(s) 40, 485, 486
AlwNI CAGNNNCTG 1 cut(s) 586
Ama87I CYCGRG 1 cut(s) 236
Aor13HI TCCGGA 1 cut(s) 164
ApeKI GCWGC 3 cut(s) 15, 362, 434
AsiGI ACCGGT 1 cut(s) 793
AspLEI GCGC 1 cut(s) 721
AspS9I GGNCC 4 cut(s) 136, 280, 688, 701
AsuHPI GGTGA 3 cut(s) 116, 263, 808
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 4 cut(s) 136, 280, 688, 701
BaeI ACNNNNGTAYC 2 cut(s) 171, 204
BanII GRGCYC 2 cut(s) 198, 755
Bbv12I GWGCWC 1 cut(s) 755
BbvI GCAGC 3 cut(s) 2, 374, 421
BccI CCATC 1 cut(s) 613
BceAI ACGGC 1 cut(s) 105
BclI TGATCA 1 cut(s) 253
BcuI ACTAGT 1 cut(s) 182
BfaI CTAG 2 cut(s) 183, 599
BfoI RGCGCY 1 cut(s) 722
BisI GCNGC 4 cut(s) 5, 16, 363, 435
BlsI GCNGC 4 cut(s) 6, 17, 364, 436
Bme18I GGWCC 4 cut(s) 136, 280, 688, 701
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 4 cut(s) 136, 280, 688, 701
BmiI GGNNCC 4 cut(s) 138, 169, 689, 690
BmrI ACTGGG 1 cut(s) 478
BmsI GCATC 1 cut(s) 93
BmuI ACTGGG 1 cut(s) 478
BpmI CTGGAG 2 cut(s) 519, 769
BpuEI CTTGAG 2 cut(s) 26, 715
Bsa29I ATCGAT 1 cut(s) 540
BsaBI GATNNNNATC 1 cut(s) 86
BsaJI CCNNGG 4 cut(s) 132, 293, 603, 671
BsaWI WCCGGW 2 cut(s) 164, 793
BsaXI ACNNNNNCTCC 2 cut(s) 737, 767
Bsc4I CCNNNNNNNGG 3 cut(s) 133, 469, 698
Bse118I RCCGGY 1 cut(s) 793
Bse1I ACTGG 3 cut(s) 473, 502, 752
Bse3DI GCAATG 1 cut(s) 590
Bse8I GATNNNNATC 1 cut(s) 86
BseAI TCCGGA 1 cut(s) 164
BseCI ATCGAT 1 cut(s) 540
BseDI CCNNGG 4 cut(s) 132, 293, 603, 671
BseGI GGATG 1 cut(s) 108
BseJI GATNNNNATC 1 cut(s) 86
BseLI CCNNNNNNNGG 3 cut(s) 133, 469, 698
BseMI GCAATG 1 cut(s) 590
BseMII CTCAG 2 cut(s) 183, 625
BseNI ACTGG 3 cut(s) 473, 502, 752
BseXI GCAGC 3 cut(s) 2, 374, 421
BsgI GTGCAG 1 cut(s) 420
BshTI ACCGGT 1 cut(s) 793
BshVI ATCGAT 1 cut(s) 540
BsiHKAI GWGCWC 1 cut(s) 755
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 2 cut(s) 165, 794
BslFI GGGAC 1 cut(s) 701
BslI CCNNNNNNNGG 3 cut(s) 133, 469, 698
BsmFI GGGAC 1 cut(s) 701
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 2 cut(s) 198, 755
Bsp13I TCCGGA 1 cut(s) 164
Bsp143I GATC 6 cut(s) 45, 81, 174, 253, 478, 490
Bsp19I CCATGG 2 cut(s) 293, 603
BspACI CCGC 4 cut(s) 4, 140, 317, 704
BspCNI CTCAG 2 cut(s) 184, 624
BspDI ATCGAT 1 cut(s) 540
BspEI TCCGGA 1 cut(s) 164
BspLI GGNNCC 4 cut(s) 138, 169, 689, 690
BspPI GGATC 3 cut(s) 40, 485, 486
BsrDI GCAATG 1 cut(s) 590
BsrFI RCCGGY 1 cut(s) 793
BsrI ACTGG 3 cut(s) 473, 502, 752
BssAI RCCGGY 1 cut(s) 793
BssECI CCNNGG 4 cut(s) 132, 293, 603, 671
BssMI GATC 6 cut(s) 45, 81, 174, 253, 478, 490
BssT1I CCWWGG 3 cut(s) 293, 603, 671
Bst4CI ACNGT 2 cut(s) 464, 588
Bst6I CTCTTC 1 cut(s) 645
BstAPI GCANNNNNTGC 1 cut(s) 443
BstC8I GCNNGC 2 cut(s) 723, 727
BstDEI CTNAG 4 cut(s) 192, 506, 515, 611
BstDSI CCRYGG 3 cut(s) 132, 293, 603
BstF5I GGATG 1 cut(s) 108
BstH2I RGCGCY 1 cut(s) 722
BstHHI GCGC 1 cut(s) 721
BstKTI GATC 6 cut(s) 48, 84, 177, 256, 481, 493
BstMBI GATC 6 cut(s) 45, 81, 174, 253, 478, 490
BstMWI GCNNNNNNNGC 4 cut(s) 368, 443, 452, 572
BstV1I GCAGC 3 cut(s) 2, 374, 421
BstX2I RGATCY 2 cut(s) 45, 478
BstYI RGATCY 2 cut(s) 45, 478
Bsu15I ATCGAT 1 cut(s) 540
BsuTUI ATCGAT 1 cut(s) 540
BtgI CCRYGG 3 cut(s) 132, 293, 603
BtgZI GCGATG 2 cut(s) 436, 632
BtsCI GGATG 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 466
Cac8I GCNNGC 2 cut(s) 723, 727
CaiI CAGNNNCTG 1 cut(s) 586
CfoI GCGC 1 cut(s) 721
Cfr10I RCCGGY 1 cut(s) 793
Cfr13I GGNCC 4 cut(s) 136, 280, 688, 701
ClaI ATCGAT 1 cut(s) 540
CspAI ACCGGT 1 cut(s) 793
CviAII CATG 6 cut(s) 20, 110, 257, 294, 313, 604
DdeI CTNAG 4 cut(s) 192, 506, 515, 611
DpnI GATC 6 cut(s) 47, 83, 176, 255, 480, 492
DpnII GATC 6 cut(s) 45, 81, 174, 253, 478, 490
Eam1104I CTCTTC 1 cut(s) 645
EarI CTCTTC 1 cut(s) 645
Ecl136II GAGCTC 1 cut(s) 753
Eco130I CCWWGG 3 cut(s) 293, 603, 671
Eco24I GRGCYC 2 cut(s) 198, 755
Eco47I GGWCC 4 cut(s) 136, 280, 688, 701
Eco53kI GAGCTC 1 cut(s) 753
Eco57I CTGAAG 1 cut(s) 387
Eco88I CYCGRG 1 cut(s) 236
EcoICRI GAGCTC 1 cut(s) 753
EcoO109I RGGNCCY 1 cut(s) 688
EcoT14I CCWWGG 3 cut(s) 293, 603, 671
EcoT38I GRGCYC 2 cut(s) 198, 755
ErhI CCWWGG 3 cut(s) 293, 603, 671
FaeI CATG 6 cut(s) 23, 113, 260, 297, 316, 607
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FaqI GGGAC 1 cut(s) 701
FatI CATG 6 cut(s) 19, 109, 256, 293, 312, 603
FauI CCCGC 1 cut(s) 147
FauNDI CATATG 1 cut(s) 98
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 4 cut(s) 5, 16, 363, 435
FokI GGATG 1 cut(s) 115
FriOI GRGCYC 2 cut(s) 198, 755
Fsp4HI GCNGC 4 cut(s) 5, 16, 363, 435
FspBI CTAG 2 cut(s) 183, 599
GlaI GCGC 1 cut(s) 720
GluI GCNGC 4 cut(s) 5, 16, 363, 435
GsuI CTGGAG 2 cut(s) 519, 769
HaeII RGCGCY 1 cut(s) 722
HapII CCGG 2 cut(s) 165, 794
HhaI GCGC 1 cut(s) 721
Hin1II CATG 6 cut(s) 23, 113, 260, 297, 316, 607
Hin6I GCGC 1 cut(s) 719
HinP1I GCGC 1 cut(s) 719
HindIII AAGCTT 1 cut(s) 63
HinfI GANTC 3 cut(s) 205, 759, 787
HpaII CCGG 2 cut(s) 165, 794
HphI GGTGA 3 cut(s) 116, 263, 808
Hpy166II GTNNAC 3 cut(s) 136, 791, 799
Hpy188I TCNGA 3 cut(s) 193, 614, 764
Hpy188III TCNNGA 3 cut(s) 43, 165, 756
Hpy8I GTNNAC 3 cut(s) 136, 791, 799
HpyAV CCTTC 3 cut(s) 137, 293, 355
HpyCH4III ACNGT 2 cut(s) 464, 588
HpyCH4V TGCA 4 cut(s) 336, 437, 446, 549
HpyF10VI GCNNNNNNNGC 4 cut(s) 368, 443, 452, 572
HpyF3I CTNAG 4 cut(s) 192, 506, 515, 611
Hsp92II CATG 6 cut(s) 23, 113, 260, 297, 316, 607
HspAI GCGC 1 cut(s) 719
KflI GGGWCCC 1 cut(s) 688
Kpn2I TCCGGA 1 cut(s) 164
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 6 cut(s) 45, 81, 174, 253, 478, 490
LmnI GCTCC 5 cut(s) 111, 167, 295, 750, 758
Lsp1109I GCAGC 3 cut(s) 2, 374, 421
LweI GCATC 1 cut(s) 93
MaeI CTAG 2 cut(s) 183, 599
MaeIII GTNAC 3 cut(s) 122, 340, 464
MalI GATC 6 cut(s) 47, 83, 176, 255, 480, 492
MboI GATC 6 cut(s) 45, 81, 174, 253, 478, 490
MboII GAAGA 5 cut(s) 214, 473, 542, 662, 668
MflI RGATCY 2 cut(s) 45, 478
MhlI GDGCHC 2 cut(s) 198, 755
MluCI AATT 2 cut(s) 10, 52
MlyI GAGTC 1 cut(s) 796
MmeI TCCRAC 2 cut(s) 258, 518
MnlI CCTC 3 cut(s) 50, 153, 646
MroI TCCGGA 1 cut(s) 164
MseI TTAA 2 cut(s) 51, 264
MslI CAYNNNNRTG 1 cut(s) 101
MspA1I CMGCKG 1 cut(s) 365
MspI CCGG 2 cut(s) 165, 794
MwoI GCNNNNNNNGC 4 cut(s) 368, 443, 452, 572
NcoI CCATGG 2 cut(s) 293, 603
NdeI CATATG 1 cut(s) 98
NdeII GATC 6 cut(s) 45, 81, 174, 253, 478, 490
NlaIII CATG 6 cut(s) 23, 113, 260, 297, 316, 607
NlaIV GGNNCC 4 cut(s) 138, 169, 689, 690
NmuCI GTSAC 2 cut(s) 122, 464
PfeI GAWTC 2 cut(s) 205, 759
PflMI CCANNNNNTGG 1 cut(s) 698
PinAI ACCGGT 1 cut(s) 793
PkrI GCNGC 4 cut(s) 6, 17, 364, 436
PleI GAGTC 1 cut(s) 795
PpsI GAGTC 1 cut(s) 795
PpuMI RGGWCCY 1 cut(s) 688
Psp124BI GAGCTC 1 cut(s) 755
Psp5II RGGWCCY 1 cut(s) 688
PspN4I GGNNCC 4 cut(s) 138, 169, 689, 690
PspPI GGNCC 4 cut(s) 136, 280, 688, 701
PspPPI RGGWCCY 1 cut(s) 688
PstNI CAGNNNCTG 1 cut(s) 586
PsuI RGATCY 2 cut(s) 45, 478
PvuII CAGCTG 1 cut(s) 365
RseI CAYNNNNRTG 1 cut(s) 101
SacI GAGCTC 1 cut(s) 755
SaqAI TTAA 2 cut(s) 51, 264
SatI GCNGC 4 cut(s) 5, 16, 363, 435
Sau3AI GATC 6 cut(s) 45, 81, 174, 253, 478, 490
Sau96I GGNCC 4 cut(s) 136, 280, 688, 701
SchI GAGTC 1 cut(s) 796
SduI GDGCHC 2 cut(s) 198, 755
SfaNI GCATC 1 cut(s) 93
SgrAI CRCCGGYG 1 cut(s) 793
SinI GGWCC 4 cut(s) 136, 280, 688, 701
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 2 cut(s) 41, 730
SmoI CTYRAG 2 cut(s) 41, 730
SpeI ACTAGT 1 cut(s) 182
Sse9I AATT 2 cut(s) 10, 52
SsiI CCGC 4 cut(s) 4, 140, 317, 704
SspMI CTAG 2 cut(s) 183, 599
SstI GAGCTC 1 cut(s) 755
StyI CCWWGG 3 cut(s) 293, 603, 671
TaaI ACNGT 2 cut(s) 464, 588
TaqI TCGA 2 cut(s) 80, 540
TasI AATT 2 cut(s) 10, 52
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 2 cut(s) 205, 759
Tru1I TTAA 2 cut(s) 51, 264
Tru9I TTAA 2 cut(s) 51, 264
TscAI CASTG 1 cut(s) 473
TseFI GTSAC 2 cut(s) 122, 464
TseI GCWGC 3 cut(s) 15, 362, 434
Tsp45I GTSAC 2 cut(s) 122, 464
TspDTI ATGAA 9 cut(s) 15, 58, 126, 144, 289, 301, 337, 346, 514
TspGWI ACGGA 2 cut(s) 135, 474
TspRI CASTG 1 cut(s) 473
Van91I CCANNNNNTGG 1 cut(s) 698
VpaK11BI GGWCC 4 cut(s) 136, 280, 688, 701
XcmI CCANNNNNNNNNTGG 2 cut(s) 68, 722
XspI CTAG 2 cut(s) 183, 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.