pycom05g16850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0011210
Physical Location & Seq
Forward (+)
20127630 .. 20129812
2183 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g16850.3

Sequence Viewer

Length: 789 bp
ATGCGGCCCAATTGCTGCCATGTATCCCTAGCTTTCGTCCTCAAACTCCTCAACTTTCTTCAAGCTTTCGTCGGAGTTTCGATCTTAGTCTACTCGGCATGGATGCTCAACCAGTGGAACCACCACATCCCGATAGTCCCGCCACCGCCTTCAGCTCCTTCTCCTGATTCTTCGTCCTTCTCCTCCCTCCTATTGAGCTCCGAATCGGCTGCGGTTGCCGATCAGATCACGCCGTTGGATTTTGCTGTCCATTTGGTTTCTGGGTTCGATGAGGGATCGGGGTTCGGATTGAACTCGCTGAAGCTTCCCGCGCCCTGGTTCATCTACTCTTTTATGGGACTGGGGATTTTGCTCTGTTGCGTTACTTTCATAGGTTGTATTGCAGCCGCAGCAATTAATGGCTGCTGCCTTTGCTTTCGCCCGATCTTTCCATTTGACCCAACTGGTCAACTTGACAGTTTTCGATCTTTTGTGGAAGAGAATATTGACATCTGTAGGTGGGTCGGGCTCGGTGTCATTGTAATACAGGTTTTATCTCTGCTACTATCAATAACTCTGCGAGGCTTGCTTTCTACTCACAAACCTGACTATGATGTTGAAGATGATTATGATGATAGGGCTAGAACTCGGGAGCCCCTGTTAAAACAACAATTAAACCAAGCATCTGGATCAACCAAGGGCGATGGGAAAGGGACTCACTCTGACATTTGGAGCTTACGGATAAGAGATAAGTATGGATTGAGCTCTCTGAATCAGAATGCATCACCGAGTATGAAATCCAAGCAGTAA

Protein Analysis

263

Amino Acids

28.68

Weight (kDa)

6.04

Isoelectric Point (pI)

43.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20230 AT4G28770 AT4G28770
fragaria_vesca FvH4_2g19890 FvH4_2g19890
malus_domestica MD05G1183500.v1.1 MD10G1171300.v1.1
prunus_persica Prupe.8G209700_v2.0.a1
pyrus_communis pycom05g16850 pycom10g14770
rosa_chinensis RchiOBHm_Chr6g0285581
rosa_laevigata RLG00000012625
rosa_multiflora Rmu_sc0012495.1_g000001
rosa_roxburghii Rroxscaffold_7G00182930
rosa_rugosa Rorug06G0175800
rosa_samantha Rh6AG287300 Rh6BG288500 Rh6CG289700 Rh6DG282500
rosa_wichuraiana Rw6G024700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 90
AccII CGCG 1 cut(s) 311
AciI CCGC 6 cut(s) 4, 140, 146, 212, 309, 387
AclWI GGATC 2 cut(s) 283, 676
AcuI CTGAAG 2 cut(s) 135, 320
AfiI CCNNNNNNNGG 1 cut(s) 315
AgsI TTSAA 3 cut(s) 62, 292, 599
AjnI CCWGG 1 cut(s) 314
AluBI AGCT 7 cut(s) 32, 65, 155, 198, 304, 714, 744
AluI AGCT 7 cut(s) 32, 65, 155, 198, 304, 714, 744
Alw21I GWGCWC 2 cut(s) 200, 746
AlwI GGATC 2 cut(s) 283, 676
Ama87I CYCGRG 1 cut(s) 627
AoxI GGCC 1 cut(s) 5
ApeKI GCWGC 6 cut(s) 15, 209, 383, 389, 402, 405
AseI ATTAAT 1 cut(s) 396
AspLEI GCGC 1 cut(s) 313
AspS9I GGNCC 1 cut(s) 6
AsuHPI GGTGA 1 cut(s) 756
AvaI CYCGRG 1 cut(s) 627
BanII GRGCYC 4 cut(s) 200, 510, 636, 746
Bbv12I GWGCWC 2 cut(s) 200, 746
BbvI GCAGC 6 cut(s) 2, 196, 389, 392, 395, 401
BccI CCATC 1 cut(s) 677
BceAI ACGGC 1 cut(s) 217
BcgI CGANNNNNNTGC 2 cut(s) 191, 225
BciT130I CCWGG 1 cut(s) 316
BciVI GTATCC 1 cut(s) 34
BfaI CTAG 2 cut(s) 29, 621
BfmI CTRYAG 1 cut(s) 493
BfuI GTATCC 1 cut(s) 34
BisI GCNGC 8 cut(s) 5, 16, 210, 384, 387, 390, 403, 406
BlsI GCNGC 8 cut(s) 6, 17, 211, 385, 388, 391, 404, 407
Bme1390I CCNGG 1 cut(s) 316
BmeT110I CYCGRG 1 cut(s) 627
BmgT120I GGNCC 1 cut(s) 6
BmiI GGNNCC 2 cut(s) 119, 633
BmrFI CCNGG 1 cut(s) 316
BmrI ACTGGG 1 cut(s) 350
BmsI GCATC 3 cut(s) 93, 671, 770
BmuI ACTGGG 1 cut(s) 350
BsaJI CCNNGG 2 cut(s) 314, 675
BsaXI ACNNNNNCTCC 2 cut(s) 623, 653
Bsc4I CCNNNNNNNGG 1 cut(s) 315
Bse1I ACTGG 3 cut(s) 112, 345, 448
BseBI CCWGG 1 cut(s) 316
BseDI CCNNGG 2 cut(s) 314, 675
BseGI GGATG 2 cut(s) 108, 126
BseLI CCNNNNNNNGG 1 cut(s) 315
BseNI ACTGG 3 cut(s) 112, 345, 448
BseRI GAGGAG 2 cut(s) 38, 172
BseXI GCAGC 6 cut(s) 2, 196, 389, 392, 395, 401
Bsh1236I CGCG 1 cut(s) 311
BshFI GGCC 1 cut(s) 7
BsiHKAI GWGCWC 2 cut(s) 200, 746
BsiHKCI CYCGRG 1 cut(s) 627
BslFI GGGAC 3 cut(s) 122, 351, 706
BslI CCNNNNNNNGG 1 cut(s) 315
BsmFI GGGAC 3 cut(s) 122, 351, 706
BsmI GAATGC 1 cut(s) 763
BsnI GGCC 1 cut(s) 7
BsoBI CYCGRG 1 cut(s) 627
Bsp1286I GDGCHC 4 cut(s) 200, 510, 636, 746
Bsp143I GATC 7 cut(s) 81, 220, 225, 275, 423, 464, 668
BspACI CCGC 6 cut(s) 4, 140, 146, 212, 309, 387
BspANI GGCC 1 cut(s) 7
BspFNI CGCG 1 cut(s) 311
BspLI GGNNCC 2 cut(s) 119, 633
BspPI GGATC 2 cut(s) 283, 676
BsrI ACTGG 3 cut(s) 112, 345, 448
BssECI CCNNGG 2 cut(s) 314, 675
BssMI GATC 7 cut(s) 81, 220, 225, 275, 423, 464, 668
BssT1I CCWWGG 1 cut(s) 675
Bst2UI CCWGG 1 cut(s) 316
Bst4CI ACNGT 1 cut(s) 458
Bst6I CTCTTC 1 cut(s) 471
BstC8I GCNNGC 1 cut(s) 566
BstDEI CTNAG 1 cut(s) 85
BstF5I GGATG 2 cut(s) 108, 126
BstFNI CGCG 1 cut(s) 311
BstHHI GCGC 1 cut(s) 313
BstKTI GATC 7 cut(s) 84, 223, 228, 278, 426, 467, 671
BstMBI GATC 7 cut(s) 81, 220, 225, 275, 423, 464, 668
BstMWI GCNNNNNNNGC 5 cut(s) 215, 310, 389, 411, 565
BstNI CCWGG 1 cut(s) 316
BstSCI CCNGG 1 cut(s) 314
BstSFI CTRYAG 1 cut(s) 493
BstUI CGCG 1 cut(s) 311
BstV1I GCAGC 6 cut(s) 2, 196, 389, 392, 395, 401
BstXI CCANNNNNNTGG 1 cut(s) 665
BsuI GTATCC 1 cut(s) 34
BsuRI GGCC 1 cut(s) 7
BtgZI GCGATG 1 cut(s) 696
BtsCI GGATG 2 cut(s) 108, 126
BtsIMutI CAGTG 1 cut(s) 119
Cac8I GCNNGC 1 cut(s) 566
CfoI GCGC 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 6
CviAII CATG 2 cut(s) 20, 99
DdeI CTNAG 1 cut(s) 85
DpnI GATC 7 cut(s) 83, 222, 227, 277, 425, 466, 670
DpnII GATC 7 cut(s) 81, 220, 225, 275, 423, 464, 668
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
Ecl136II GAGCTC 2 cut(s) 198, 744
Eco130I CCWWGG 1 cut(s) 675
Eco24I GRGCYC 4 cut(s) 200, 510, 636, 746
Eco53kI GAGCTC 2 cut(s) 198, 744
Eco57I CTGAAG 2 cut(s) 135, 320
Eco88I CYCGRG 1 cut(s) 627
EcoICRI GAGCTC 2 cut(s) 198, 744
EcoRII CCWGG 1 cut(s) 314
EcoT14I CCWWGG 1 cut(s) 675
EcoT22I ATGCAT 1 cut(s) 763
EcoT38I GRGCYC 4 cut(s) 200, 510, 636, 746
ErhI CCWWGG 1 cut(s) 675
FaeI CATG 2 cut(s) 23, 102
FaiI YATR 8 cut(s) 21, 100, 335, 371, 591, 609, 735, 773
FaqI GGGAC 3 cut(s) 122, 351, 706
FatI CATG 2 cut(s) 19, 98
FauI CCCGC 2 cut(s) 147, 316
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 8 cut(s) 5, 16, 210, 384, 387, 390, 403, 406
FokI GGATG 2 cut(s) 113, 115
FriOI GRGCYC 4 cut(s) 200, 510, 636, 746
Fsp4HI GCNGC 8 cut(s) 5, 16, 210, 384, 387, 390, 403, 406
FspBI CTAG 2 cut(s) 29, 621
GlaI GCGC 1 cut(s) 312
GluI GCNGC 8 cut(s) 5, 16, 210, 384, 387, 390, 403, 406
HaeIII GGCC 1 cut(s) 7
HhaI GCGC 1 cut(s) 313
Hin1II CATG 2 cut(s) 23, 102
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HincII GTYRAC 1 cut(s) 449
HindII GTYRAC 1 cut(s) 449
HindIII AAGCTT 2 cut(s) 63, 302
HinfI GANTC 4 cut(s) 167, 203, 694, 751
HphI GGTGA 1 cut(s) 756
Hpy166II GTNNAC 2 cut(s) 91, 449
Hpy188I TCNGA 7 cut(s) 74, 202, 225, 287, 703, 750, 756
Hpy188III TCNNGA 4 cut(s) 130, 164, 629, 666
Hpy8I GTNNAC 2 cut(s) 91, 449
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 3 cut(s) 159, 168, 187
HpyCH4III ACNGT 1 cut(s) 458
HpyCH4V TGCA 2 cut(s) 383, 761
HpyF10VI GCNNNNNNNGC 5 cut(s) 215, 310, 389, 411, 565
HpyF3I CTNAG 1 cut(s) 85
Hsp92II CATG 2 cut(s) 23, 102
HspAI GCGC 1 cut(s) 311
Kzo9I GATC 7 cut(s) 81, 220, 225, 275, 423, 464, 668
LmnI GCTCC 4 cut(s) 160, 203, 631, 711
Lsp1109I GCAGC 6 cut(s) 2, 196, 389, 392, 395, 401
LweI GCATC 3 cut(s) 93, 671, 770
MaeI CTAG 2 cut(s) 29, 621
MaeIII GTNAC 1 cut(s) 361
MalI GATC 7 cut(s) 83, 222, 227, 277, 425, 466, 670
MboI GATC 7 cut(s) 81, 220, 225, 275, 423, 464, 668
MboII GAAGA 4 cut(s) 50, 162, 488, 611
MfeI CAATTG 1 cut(s) 10
MhlI GDGCHC 4 cut(s) 200, 510, 636, 746
MluCI AATT 3 cut(s) 10, 393, 650
MlyI GAGTC 1 cut(s) 688
MmeI TCCRAC 2 cut(s) 52, 216
MnlI CCTC 6 cut(s) 50, 59, 193, 197, 265, 554
Mph1103I ATGCAT 1 cut(s) 763
MseI TTAA 3 cut(s) 396, 641, 653
MspR9I CCNGG 1 cut(s) 316
MunI CAATTG 1 cut(s) 10
Mva1269I GAATGC 1 cut(s) 763
MvaI CCWGG 1 cut(s) 316
MvnI CGCG 1 cut(s) 311
MwoI GCNNNNNNNGC 5 cut(s) 215, 310, 389, 411, 565
NdeII GATC 7 cut(s) 81, 220, 225, 275, 423, 464, 668
NlaIII CATG 2 cut(s) 23, 102
NlaIV GGNNCC 2 cut(s) 119, 633
NmeAIII GCCGAG 1 cut(s) 74
NsiI ATGCAT 1 cut(s) 763
PctI GAATGC 1 cut(s) 763
PfeI GAWTC 3 cut(s) 167, 203, 751
PkrI GCNGC 8 cut(s) 6, 17, 211, 385, 388, 391, 404, 407
PleI GAGTC 1 cut(s) 688
PpsI GAGTC 1 cut(s) 688
PshBI ATTAAT 1 cut(s) 396
Psp124BI GAGCTC 2 cut(s) 200, 746
Psp6I CCWGG 1 cut(s) 314
PspGI CCWGG 1 cut(s) 314
PspN4I GGNNCC 2 cut(s) 119, 633
PspPI GGNCC 1 cut(s) 6
SacI GAGCTC 2 cut(s) 200, 746
SaqAI TTAA 3 cut(s) 396, 641, 653
SatI GCNGC 8 cut(s) 5, 16, 210, 384, 387, 390, 403, 406
Sau3AI GATC 7 cut(s) 81, 220, 225, 275, 423, 464, 668
Sau96I GGNCC 1 cut(s) 6
SchI GAGTC 1 cut(s) 688
ScrFI CCNGG 1 cut(s) 316
SduI GDGCHC 4 cut(s) 200, 510, 636, 746
SfaNI GCATC 3 cut(s) 93, 671, 770
SfcI CTRYAG 1 cut(s) 493
Sse9I AATT 3 cut(s) 10, 393, 650
SsiI CCGC 6 cut(s) 4, 140, 146, 212, 309, 387
SspI AATATT 1 cut(s) 484
SspMI CTAG 2 cut(s) 29, 621
SstI GAGCTC 2 cut(s) 200, 746
StyD4I CCNGG 1 cut(s) 314
StyI CCWWGG 1 cut(s) 675
TaaI ACNGT 1 cut(s) 458
TaqI TCGA 3 cut(s) 80, 267, 463
TasI AATT 3 cut(s) 10, 393, 650
TauI GCSGC 2 cut(s) 7, 389
TfiI GAWTC 3 cut(s) 167, 203, 751
Tru1I TTAA 3 cut(s) 396, 641, 653
Tru9I TTAA 3 cut(s) 396, 641, 653
TscAI CASTG 1 cut(s) 119
TseI GCWGC 6 cut(s) 15, 209, 383, 389, 402, 405
TspDTI ATGAA 3 cut(s) 310, 358, 788
TspGWI ACGGA 1 cut(s) 733
TspRI CASTG 1 cut(s) 119
VspI ATTAAT 1 cut(s) 396
XcmI CCANNNNNNNNNTGG 1 cut(s) 257
XmiI GTMKAC 1 cut(s) 90
XspI CTAG 2 cut(s) 29, 621
Zsp2I ATGCAT 1 cut(s) 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.