Rw6G024700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0011210
Physical Location & Seq
Forward (+)
47858067 .. 47860495
2429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G024700.1

Sequence Viewer

Length: 873 bp
ATGCAGAAGAATTGCTGCCACGTATGCTTAGCTTTCGTGCTCAAATTCCTCAACTTTCTTCAAGCTTTCGTCGGCGTCGCGATCCTTGTCTACTCGGCGTGGATGCTTGATCAGTGGAACCATCACATTCCGGTGTTCCCACCGCCCTCCGCGCCTTCCCCGGACTCTCCTTTCTCACTTTCGTTGGGCTCCGACGCCGGCGCGGCTTCCGATCAGATCACGCCGTTGGATTTTGCAGTCCGGTTGGTGTCTGGGGTCGATGACGGCATGGGGTTTCAATTGAATGCAGTGAAGCTCCCTGCTCCTTGGTTCATCTACTCTTTTATGGGAGTGGGGGCTTTGCTCTGTTGCATTACTTTCATAGGTTGTATCGCAGCGGAATCAATCAACGGCTGCTGCCTGTGTTTCTACAGTCTGCTCATAACGGTACTAACTCTAGTGGAAGCAGCTCTGGTAGCGTTCATAGCAATTGATCACCATTGGGACAAGGATCTTCCACTTGACCCAACTGGTGAACTTGACAGTCTTCGATCTTTTATTGAAGAGAACATTGACATCTGTAAGTGCGTTGGGATAGCTGTTATTGGAATACAGGCTTTATCTCTGCTACTAGCAATAATTCTACGAGGCATGATATCTACTCATAAACCTGACTATGATGTTGAAGATGAGTACAATGCTAGGGGTAGAACTTGGGAACCACTGCTAAATCAACAGTCAAGCCAAGCATCTGGATCAACCAAGGGTGATGGCAGAGGGACTCACTCTGACATTTGGAGCTCACGAATGAGAGATAAGTATGGATTGAGCTCTGGTGATAAATACAATTCTGTAAATCAGAATGCATCAATGAGTATGAAATCCAGGCAGTGA

Protein Analysis

290

Amino Acids

31.65

Weight (kDa)

5.14

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tetraspanin PF00335 11 - 161 1.4e-07 Tetraspanin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20230 AT4G28770 AT4G28770
fragaria_vesca FvH4_2g19890 FvH4_2g19890
malus_domestica MD05G1183500.v1.1 MD10G1171300.v1.1
prunus_persica Prupe.8G209700_v2.0.a1
pyrus_communis pycom05g16850 pycom10g14770
rosa_chinensis RchiOBHm_Chr6g0285581
rosa_laevigata RLG00000012625
rosa_multiflora Rmu_sc0012495.1_g000001
rosa_roxburghii Rroxscaffold_7G00182930
rosa_rugosa Rorug06G0175800
rosa_samantha Rh6AG287300 Rh6BG288500 Rh6CG289700 Rh6DG282500
rosa_wichuraiana Rw6G024700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 90
AccII CGCG 3 cut(s) 80, 152, 203
AciI CCGC 4 cut(s) 143, 150, 203, 377
AclWI GGATC 3 cut(s) 76, 498, 742
AcsI RAATTY 1 cut(s) 44
AcyI GRCGYC 2 cut(s) 75, 195
AfaI GTAC 2 cut(s) 429, 674
AgsI TTSAA 5 cut(s) 62, 278, 283, 542, 665
AjnI CCWGG 1 cut(s) 863
AluBI AGCT 7 cut(s) 32, 65, 295, 449, 578, 780, 810
AluI AGCT 7 cut(s) 32, 65, 295, 449, 578, 780, 810
Alw21I GWGCWC 3 cut(s) 42, 782, 812
AlwI GGATC 3 cut(s) 76, 498, 742
ApeKI GCWGC 5 cut(s) 15, 374, 393, 396, 446
ApoI RAATTY 1 cut(s) 44
AspLEI GCGC 2 cut(s) 154, 203
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 4 cut(s) 467, 524, 758, 827
BanII GRGCYC 3 cut(s) 191, 782, 812
BbsI GAAGAC 1 cut(s) 518
Bbv12I GWGCWC 3 cut(s) 42, 782, 812
BbvI GCAGC 5 cut(s) 2, 380, 383, 386, 458
BccI CCATC 2 cut(s) 129, 743
BceAI ACGGC 3 cut(s) 208, 280, 406
BciT130I CCWGG 1 cut(s) 865
BclI TGATCA 2 cut(s) 109, 472
BcnI CCSGG 1 cut(s) 161
BfaI CTAG 3 cut(s) 437, 611, 681
BfmI CTRYAG 1 cut(s) 409
BglI GCCNNNNNGGC 1 cut(s) 203
BisI GCNGC 6 cut(s) 16, 204, 375, 394, 397, 447
BlpI GCTNAGC 1 cut(s) 28
BlsI GCNGC 6 cut(s) 17, 205, 376, 395, 398, 448
Bme1390I CCNGG 2 cut(s) 161, 865
BmiI GGNNCC 3 cut(s) 119, 190, 699
BmrFI CCNGG 2 cut(s) 161, 865
BmsI GCATC 3 cut(s) 93, 737, 854
BpiI GAAGAC 1 cut(s) 518
Bpu1102I GCTNAGC 1 cut(s) 28
BpuMI CCSGG 1 cut(s) 161
BsaAI YACGTR 1 cut(s) 22
BsaHI GRCGYC 2 cut(s) 75, 195
BsaJI CCNNGG 3 cut(s) 159, 305, 741
BsaWI WCCGGW 2 cut(s) 130, 240
Bse118I RCCGGY 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 514
BseBI CCWGG 1 cut(s) 865
BseDI CCNNGG 3 cut(s) 159, 305, 741
BseGI GGATG 1 cut(s) 108
BseNI ACTGG 1 cut(s) 514
BseXI GCAGC 5 cut(s) 2, 380, 383, 386, 458
Bsh1236I CGCG 3 cut(s) 80, 152, 203
BsiHKAI GWGCWC 3 cut(s) 42, 782, 812
BsiSI CCGG 4 cut(s) 131, 161, 198, 241
BslFI GGGAC 2 cut(s) 497, 772
BsmFI GGGAC 2 cut(s) 497, 772
BsmI GAATGC 2 cut(s) 289, 847
Bsp1286I GDGCHC 4 cut(s) 42, 191, 782, 812
Bsp143I GATC 8 cut(s) 81, 109, 211, 216, 472, 490, 530, 734
Bsp1720I GCTNAGC 1 cut(s) 28
Bsp68I TCGCGA 1 cut(s) 80
BspACI CCGC 4 cut(s) 143, 150, 203, 377
BspFNI CGCG 3 cut(s) 80, 152, 203
BspLI GGNNCC 3 cut(s) 119, 190, 699
BspPI GGATC 3 cut(s) 76, 498, 742
BsrFI RCCGGY 1 cut(s) 197
BsrI ACTGG 1 cut(s) 514
BssAI RCCGGY 1 cut(s) 197
BssECI CCNNGG 3 cut(s) 159, 305, 741
BssMI GATC 8 cut(s) 81, 109, 211, 216, 472, 490, 530, 734
BssNI GRCGYC 2 cut(s) 75, 195
BssT1I CCWWGG 2 cut(s) 305, 741
Bst2UI CCWGG 1 cut(s) 865
Bst4CI ACNGT 4 cut(s) 413, 427, 524, 717
Bst6I CTCTTC 1 cut(s) 537
BstACI GRCGYC 2 cut(s) 75, 195
BstBAI YACGTR 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 199
BstDEI CTNAG 1 cut(s) 28
BstF5I GGATG 1 cut(s) 108
BstFNI CGCG 3 cut(s) 80, 152, 203
BstHHI GCGC 2 cut(s) 154, 203
BstKTI GATC 8 cut(s) 84, 112, 214, 219, 475, 493, 533, 737
BstMBI GATC 8 cut(s) 81, 109, 211, 216, 472, 490, 530, 734
BstMWI GCNNNNNNNGC 5 cut(s) 24, 151, 203, 455, 464
BstNI CCWGG 1 cut(s) 865
BstSCI CCNGG 2 cut(s) 159, 863
BstSFI CTRYAG 1 cut(s) 409
BstUI CGCG 3 cut(s) 80, 152, 203
BstV1I GCAGC 5 cut(s) 2, 380, 383, 386, 458
BstV2I GAAGAC 1 cut(s) 518
BstX2I RGATCY 1 cut(s) 490
BstXI CCANNNNNNTGG 1 cut(s) 731
BstYI RGATCY 1 cut(s) 490
BtsCI GGATG 1 cut(s) 108
BtsI GCAGTG 2 cut(s) 294, 701
BtsIMutI CAGTG 3 cut(s) 119, 294, 701
BtuMI TCGCGA 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 199
CfoI GCGC 2 cut(s) 154, 203
Cfr10I RCCGGY 1 cut(s) 197
CseI GACGC 2 cut(s) 64, 203
Csp6I GTAC 2 cut(s) 428, 673
CviAII CATG 2 cut(s) 268, 631
CviQI GTAC 2 cut(s) 428, 673
DdeI CTNAG 1 cut(s) 28
DpnI GATC 8 cut(s) 83, 111, 213, 218, 474, 492, 532, 736
DpnII GATC 8 cut(s) 81, 109, 211, 216, 472, 490, 530, 734
Eam1104I CTCTTC 1 cut(s) 537
EarI CTCTTC 1 cut(s) 537
Ecl136II GAGCTC 2 cut(s) 780, 810
Eco130I CCWWGG 2 cut(s) 305, 741
Eco24I GRGCYC 3 cut(s) 191, 782, 812
Eco32I GATATC 1 cut(s) 636
Eco53kI GAGCTC 2 cut(s) 780, 810
EcoICRI GAGCTC 2 cut(s) 780, 810
EcoRII CCWGG 1 cut(s) 863
EcoRV GATATC 1 cut(s) 636
EcoT14I CCWWGG 2 cut(s) 305, 741
EcoT22I ATGCAT 1 cut(s) 847
EcoT38I GRGCYC 3 cut(s) 191, 782, 812
ErhI CCWWGG 2 cut(s) 305, 741
FaeI CATG 2 cut(s) 271, 634
FaqI GGGAC 2 cut(s) 497, 772
FatI CATG 2 cut(s) 267, 630
FbaI TGATCA 2 cut(s) 109, 472
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 6 cut(s) 16, 204, 375, 394, 397, 447
FokI GGATG 1 cut(s) 115
FriOI GRGCYC 3 cut(s) 191, 782, 812
Fsp4HI GCNGC 6 cut(s) 16, 204, 375, 394, 397, 447
FspBI CTAG 3 cut(s) 437, 611, 681
GlaI GCGC 2 cut(s) 153, 202
GluI GCNGC 6 cut(s) 16, 204, 375, 394, 397, 447
HapII CCGG 4 cut(s) 131, 161, 198, 241
HgaI GACGC 2 cut(s) 64, 203
HhaI GCGC 2 cut(s) 154, 203
Hin1I GRCGYC 2 cut(s) 75, 195
Hin1II CATG 2 cut(s) 271, 634
Hin6I GCGC 2 cut(s) 152, 201
HinP1I GCGC 2 cut(s) 152, 201
HindIII AAGCTT 1 cut(s) 63
HinfI GANTC 3 cut(s) 164, 380, 760
HpaII CCGG 4 cut(s) 131, 161, 198, 241
HphI GGTGA 4 cut(s) 467, 524, 758, 827
Hpy166II GTNNAC 2 cut(s) 91, 515
Hpy188I TCNGA 5 cut(s) 193, 211, 216, 769, 840
Hpy188III TCNNGA 3 cut(s) 79, 732, 783
Hpy8I GTNNAC 2 cut(s) 91, 515
Hpy99I CGWCG 3 cut(s) 74, 80, 197
HpyAV CCTTC 1 cut(s) 165
HpyCH4III ACNGT 4 cut(s) 413, 427, 524, 717
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 5 cut(s) 4, 236, 287, 351, 845
HpyF10VI GCNNNNNNNGC 5 cut(s) 24, 151, 203, 455, 464
HpyF3I CTNAG 1 cut(s) 28
HpySE526I ACGT 1 cut(s) 21
Hsp92I GRCGYC 2 cut(s) 75, 195
Hsp92II CATG 2 cut(s) 271, 634
HspAI GCGC 2 cut(s) 152, 201
KroI GCCGGC 1 cut(s) 197
KroNI GCCGGC 1 cut(s) 199
Ksp22I TGATCA 2 cut(s) 109, 472
Kzo9I GATC 8 cut(s) 81, 109, 211, 216, 472, 490, 530, 734
LmnI GCTCC 4 cut(s) 194, 300, 307, 777
Lsp1109I GCAGC 5 cut(s) 2, 380, 383, 386, 458
LweI GCATC 3 cut(s) 93, 737, 854
MaeI CTAG 3 cut(s) 437, 611, 681
MaeII ACGT 1 cut(s) 21
MalI GATC 8 cut(s) 83, 111, 213, 218, 474, 492, 532, 736
MboI GATC 8 cut(s) 81, 109, 211, 216, 472, 490, 530, 734
MboII GAAGA 6 cut(s) 19, 50, 485, 518, 554, 677
MfeI CAATTG 2 cut(s) 278, 468
MflI RGATCY 1 cut(s) 490
MhlI GDGCHC 4 cut(s) 42, 191, 782, 812
MluCI AATT 6 cut(s) 10, 44, 278, 468, 618, 826
MlyI GAGTC 2 cut(s) 158, 754
MmeI TCCRAC 2 cut(s) 207, 216
MnlI CCTC 4 cut(s) 59, 157, 620, 749
Mph1103I ATGCAT 1 cut(s) 847
MreI CGCCGGCG 1 cut(s) 197
MroNI GCCGGC 1 cut(s) 197
MslI CAYNNNNRTG 1 cut(s) 131
MspA1I CMGCKG 1 cut(s) 377
MspI CCGG 4 cut(s) 131, 161, 198, 241
MspR9I CCNGG 2 cut(s) 161, 865
MunI CAATTG 2 cut(s) 278, 468
Mva1269I GAATGC 2 cut(s) 289, 847
MvaI CCWGG 1 cut(s) 865
MvnI CGCG 3 cut(s) 80, 152, 203
MwoI GCNNNNNNNGC 5 cut(s) 24, 151, 203, 455, 464
NaeI GCCGGC 1 cut(s) 199
NciI CCSGG 1 cut(s) 161
NdeII GATC 8 cut(s) 81, 109, 211, 216, 472, 490, 530, 734
NgoMIV GCCGGC 1 cut(s) 197
NlaIII CATG 2 cut(s) 271, 634
NlaIV GGNNCC 3 cut(s) 119, 190, 699
NmeAIII GCCGAG 1 cut(s) 74
NruI TCGCGA 1 cut(s) 80
NsiI ATGCAT 1 cut(s) 847
PctI GAATGC 2 cut(s) 289, 847
PdiI GCCGGC 1 cut(s) 199
PfeI GAWTC 1 cut(s) 380
PkrI GCNGC 6 cut(s) 17, 205, 376, 395, 398, 448
PleI GAGTC 2 cut(s) 158, 754
PpsI GAGTC 2 cut(s) 158, 754
Ppu21I YACGTR 1 cut(s) 22
Psp124BI GAGCTC 2 cut(s) 782, 812
Psp6I CCWGG 1 cut(s) 863
PspGI CCWGG 1 cut(s) 863
PspN4I GGNNCC 3 cut(s) 119, 190, 699
PsuI RGATCY 1 cut(s) 490
RruI TCGCGA 1 cut(s) 80
RsaI GTAC 2 cut(s) 429, 674
RsaNI GTAC 2 cut(s) 428, 673
RseI CAYNNNNRTG 1 cut(s) 131
SacI GAGCTC 2 cut(s) 782, 812
SatI GCNGC 6 cut(s) 16, 204, 375, 394, 397, 447
Sau3AI GATC 8 cut(s) 81, 109, 211, 216, 472, 490, 530, 734
SchI GAGTC 2 cut(s) 158, 754
ScrFI CCNGG 2 cut(s) 161, 865
SduI GDGCHC 4 cut(s) 42, 191, 782, 812
SfaNI GCATC 3 cut(s) 93, 737, 854
SfcI CTRYAG 1 cut(s) 409
SgrAI CRCCGGYG 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 131
Sse9I AATT 6 cut(s) 10, 44, 278, 468, 618, 826
SsiI CCGC 4 cut(s) 143, 150, 203, 377
SspMI CTAG 3 cut(s) 437, 611, 681
SstI GAGCTC 2 cut(s) 782, 812
StyD4I CCNGG 2 cut(s) 159, 863
StyI CCWWGG 2 cut(s) 305, 741
TaaI ACNGT 4 cut(s) 413, 427, 524, 717
TaiI ACGT 1 cut(s) 24
TaqI TCGA 2 cut(s) 258, 529
TasI AATT 6 cut(s) 10, 44, 278, 468, 618, 826
TatI WGTACW 1 cut(s) 672
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 1 cut(s) 380
TscAI CASTG 3 cut(s) 119, 294, 708
TseI GCWGC 5 cut(s) 15, 374, 393, 396, 446
TspDTI ATGAA 4 cut(s) 301, 349, 451, 872
TspRI CASTG 3 cut(s) 119, 294, 708
XapI RAATTY 1 cut(s) 44
XmiI GTMKAC 1 cut(s) 90
XspI CTAG 3 cut(s) 437, 611, 681
Zsp2I ATGCAT 1 cut(s) 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.