Rmu_sc0012495.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012495.1
OG0011210
Physical Location & Seq
Reverse (-)
154 .. 2464
2311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012495.1_g000001.1.cds

Sequence Viewer

Length: 732 bp
atgccgaagaattgctgccacctatgcttagctttcgtgctcaaattcctcaactttcttcaagctttcgtcggcgtcgcgatccttgtctactcggcgtggatgcttgatcagtggaaccatcacattccggtgttcccaccgccctccgcgccttccccggactctcctttctcactttcgttgggctccgacgccggcgcggcttccgatcagatcacgccgttggattttgcagtccggttggtgtctggggtcgatggcggcatggcgtttcaattgaatgcagtgaagctccctgctccttggttcatctactcttttatgggagtgggggctttgctctgttgcattactttcataggttgtatcgcagctgaatcaatcaacggctgctgcctgtgtttcgtatccttaacatctttggatttttctactgttactgcttctttggctttatctctgctactagcaataattctacgaggcatgatatctactcataaacctgactatgatgttgaagatgagtacaatgctaggggtagaacttgggaaccactgctaaatcaacagtcaagccaagcatctggatcaaccaagggtgatggcagagggactcactctgacatttggagctcacgaatgagagataagtatggattgagctctggtgataaatacaattctgtaaatcagaatgcatcaatgagtatgaaatccaggcagtga

Protein Analysis

243

Amino Acids

26.31

Weight (kDa)

6.17

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20230 AT4G28770 AT4G28770
fragaria_vesca FvH4_2g19890 FvH4_2g19890
malus_domestica MD05G1183500.v1.1 MD10G1171300.v1.1
prunus_persica Prupe.8G209700_v2.0.a1
pyrus_communis pycom05g16850 pycom10g14770
rosa_chinensis RchiOBHm_Chr6g0285581
rosa_laevigata RLG00000012625
rosa_multiflora Rmu_sc0012495.1_g000001
rosa_roxburghii Rroxscaffold_7G00182930
rosa_rugosa Rorug06G0175800
rosa_samantha Rh6AG287300 Rh6BG288500 Rh6CG289700 Rh6DG282500
rosa_wichuraiana Rw6G024700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 90
AccII CGCG 3 cut(s) 80, 152, 203
AciI CCGC 4 cut(s) 143, 150, 203, 264
AclWI GGATC 2 cut(s) 76, 601
AcsI RAATTY 1 cut(s) 44
AcyI GRCGYC 2 cut(s) 75, 195
AfaI GTAC 1 cut(s) 533
AgsI TTSAA 4 cut(s) 62, 278, 283, 524
AjnI CCWGG 1 cut(s) 722
AluBI AGCT 6 cut(s) 32, 65, 295, 377, 639, 669
AluI AGCT 6 cut(s) 32, 65, 295, 377, 639, 669
Alw21I GWGCWC 3 cut(s) 42, 641, 671
AlwI GGATC 2 cut(s) 76, 601
ApeKI GCWGC 4 cut(s) 15, 374, 393, 396
ApoI RAATTY 1 cut(s) 44
AspLEI GCGC 2 cut(s) 154, 203
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 2 cut(s) 617, 686
BanII GRGCYC 3 cut(s) 191, 641, 671
Bbv12I GWGCWC 3 cut(s) 42, 641, 671
BbvI GCAGC 4 cut(s) 2, 380, 383, 386
BccI CCATC 3 cut(s) 129, 254, 602
BceAI ACGGC 2 cut(s) 208, 406
BciT130I CCWGG 1 cut(s) 724
BciVI GTATCC 1 cut(s) 421
BclI TGATCA 1 cut(s) 109
BcnI CCSGG 1 cut(s) 161
BfaI CTAG 2 cut(s) 470, 540
BfuI GTATCC 1 cut(s) 421
BglI GCCNNNNNGGC 1 cut(s) 203
BisI GCNGC 6 cut(s) 16, 204, 265, 375, 394, 397
BlpI GCTNAGC 1 cut(s) 28
BlsI GCNGC 6 cut(s) 17, 205, 266, 376, 395, 398
Bme1390I CCNGG 2 cut(s) 161, 724
BmiI GGNNCC 3 cut(s) 119, 190, 558
BmrFI CCNGG 2 cut(s) 161, 724
BmsI GCATC 3 cut(s) 93, 596, 713
Bpu1102I GCTNAGC 1 cut(s) 28
BpuMI CCSGG 1 cut(s) 161
BsaHI GRCGYC 2 cut(s) 75, 195
BsaJI CCNNGG 3 cut(s) 159, 305, 600
BsaWI WCCGGW 2 cut(s) 130, 240
Bse118I RCCGGY 1 cut(s) 197
BseBI CCWGG 1 cut(s) 724
BseDI CCNNGG 3 cut(s) 159, 305, 600
BseGI GGATG 1 cut(s) 108
BseXI GCAGC 4 cut(s) 2, 380, 383, 386
Bsh1236I CGCG 3 cut(s) 80, 152, 203
BsiHKAI GWGCWC 3 cut(s) 42, 641, 671
BsiSI CCGG 4 cut(s) 131, 161, 198, 241
BslFI GGGAC 1 cut(s) 631
BsmFI GGGAC 1 cut(s) 631
BsmI GAATGC 2 cut(s) 289, 706
Bsp1286I GDGCHC 4 cut(s) 42, 191, 641, 671
Bsp143I GATC 5 cut(s) 81, 109, 211, 216, 593
Bsp1720I GCTNAGC 1 cut(s) 28
Bsp68I TCGCGA 1 cut(s) 80
BspACI CCGC 4 cut(s) 143, 150, 203, 264
BspFNI CGCG 3 cut(s) 80, 152, 203
BspLI GGNNCC 3 cut(s) 119, 190, 558
BspPI GGATC 2 cut(s) 76, 601
BsrFI RCCGGY 1 cut(s) 197
BssAI RCCGGY 1 cut(s) 197
BssECI CCNNGG 3 cut(s) 159, 305, 600
BssMI GATC 5 cut(s) 81, 109, 211, 216, 593
BssNI GRCGYC 2 cut(s) 75, 195
BssT1I CCWWGG 2 cut(s) 305, 600
Bst2UI CCWGG 1 cut(s) 724
Bst4CI ACNGT 2 cut(s) 439, 576
BstACI GRCGYC 2 cut(s) 75, 195
BstC8I GCNNGC 1 cut(s) 199
BstDEI CTNAG 1 cut(s) 28
BstF5I GGATG 1 cut(s) 108
BstFNI CGCG 3 cut(s) 80, 152, 203
BstHHI GCGC 2 cut(s) 154, 203
BstKTI GATC 5 cut(s) 84, 112, 214, 219, 596
BstMBI GATC 5 cut(s) 81, 109, 211, 216, 593
BstMWI GCNNNNNNNGC 4 cut(s) 24, 151, 203, 452
BstNI CCWGG 1 cut(s) 724
BstSCI CCNGG 2 cut(s) 159, 722
BstUI CGCG 3 cut(s) 80, 152, 203
BstV1I GCAGC 4 cut(s) 2, 380, 383, 386
BstXI CCANNNNNNTGG 1 cut(s) 590
BsuI GTATCC 1 cut(s) 421
BtsCI GGATG 1 cut(s) 108
BtsI GCAGTG 2 cut(s) 294, 560
BtsIMutI CAGTG 3 cut(s) 119, 294, 560
BtuMI TCGCGA 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 199
CfoI GCGC 2 cut(s) 154, 203
Cfr10I RCCGGY 1 cut(s) 197
CseI GACGC 2 cut(s) 64, 203
Csp6I GTAC 1 cut(s) 532
CviAII CATG 2 cut(s) 268, 490
CviQI GTAC 1 cut(s) 532
DdeI CTNAG 1 cut(s) 28
DpnI GATC 5 cut(s) 83, 111, 213, 218, 595
DpnII GATC 5 cut(s) 81, 109, 211, 216, 593
Ecl136II GAGCTC 2 cut(s) 639, 669
Eco130I CCWWGG 2 cut(s) 305, 600
Eco24I GRGCYC 3 cut(s) 191, 641, 671
Eco32I GATATC 1 cut(s) 495
Eco53kI GAGCTC 2 cut(s) 639, 669
EcoICRI GAGCTC 2 cut(s) 639, 669
EcoRII CCWGG 1 cut(s) 722
EcoRV GATATC 1 cut(s) 495
EcoT14I CCWWGG 2 cut(s) 305, 600
EcoT22I ATGCAT 1 cut(s) 706
EcoT38I GRGCYC 3 cut(s) 191, 641, 671
ErhI CCWWGG 2 cut(s) 305, 600
FaeI CATG 2 cut(s) 271, 493
FaiI YATR 9 cut(s) 25, 269, 326, 362, 491, 504, 516, 660, 716
FaqI GGGAC 1 cut(s) 631
FatI CATG 2 cut(s) 267, 489
FbaI TGATCA 1 cut(s) 109
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 6 cut(s) 16, 204, 265, 375, 394, 397
FokI GGATG 1 cut(s) 115
FriOI GRGCYC 3 cut(s) 191, 641, 671
Fsp4HI GCNGC 6 cut(s) 16, 204, 265, 375, 394, 397
FspBI CTAG 2 cut(s) 470, 540
GlaI GCGC 2 cut(s) 153, 202
GluI GCNGC 6 cut(s) 16, 204, 265, 375, 394, 397
HapII CCGG 4 cut(s) 131, 161, 198, 241
HgaI GACGC 2 cut(s) 64, 203
HhaI GCGC 2 cut(s) 154, 203
Hin1I GRCGYC 2 cut(s) 75, 195
Hin1II CATG 2 cut(s) 271, 493
Hin6I GCGC 2 cut(s) 152, 201
HinP1I GCGC 2 cut(s) 152, 201
HindIII AAGCTT 1 cut(s) 63
HinfI GANTC 3 cut(s) 164, 380, 619
HpaII CCGG 4 cut(s) 131, 161, 198, 241
HphI GGTGA 2 cut(s) 617, 686
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 5 cut(s) 193, 211, 216, 628, 699
Hpy188III TCNNGA 3 cut(s) 79, 591, 642
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 3 cut(s) 74, 80, 197
HpyAV CCTTC 1 cut(s) 165
HpyCH4III ACNGT 2 cut(s) 439, 576
HpyCH4V TGCA 4 cut(s) 236, 287, 351, 704
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 151, 203, 452
HpyF3I CTNAG 1 cut(s) 28
Hsp92I GRCGYC 2 cut(s) 75, 195
Hsp92II CATG 2 cut(s) 271, 493
HspAI GCGC 2 cut(s) 152, 201
KroI GCCGGC 1 cut(s) 197
KroNI GCCGGC 1 cut(s) 199
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 5 cut(s) 81, 109, 211, 216, 593
LmnI GCTCC 4 cut(s) 194, 300, 307, 636
Lsp1109I GCAGC 4 cut(s) 2, 380, 383, 386
LweI GCATC 3 cut(s) 93, 596, 713
MaeI CTAG 2 cut(s) 470, 540
MaeIII GTNAC 1 cut(s) 439
MalI GATC 5 cut(s) 83, 111, 213, 218, 595
MboI GATC 5 cut(s) 81, 109, 211, 216, 593
MboII GAAGA 3 cut(s) 19, 50, 536
MfeI CAATTG 1 cut(s) 278
MhlI GDGCHC 4 cut(s) 42, 191, 641, 671
MluCI AATT 5 cut(s) 10, 44, 278, 477, 685
MlyI GAGTC 2 cut(s) 158, 613
MmeI TCCRAC 2 cut(s) 207, 216
MnlI CCTC 4 cut(s) 59, 157, 479, 608
Mph1103I ATGCAT 1 cut(s) 706
MreI CGCCGGCG 1 cut(s) 197
MroNI GCCGGC 1 cut(s) 197
MseI TTAA 1 cut(s) 416
MslI CAYNNNNRTG 1 cut(s) 131
MspA1I CMGCKG 1 cut(s) 377
MspI CCGG 4 cut(s) 131, 161, 198, 241
MspR9I CCNGG 2 cut(s) 161, 724
MunI CAATTG 1 cut(s) 278
Mva1269I GAATGC 2 cut(s) 289, 706
MvaI CCWGG 1 cut(s) 724
MvnI CGCG 3 cut(s) 80, 152, 203
MwoI GCNNNNNNNGC 4 cut(s) 24, 151, 203, 452
NaeI GCCGGC 1 cut(s) 199
NciI CCSGG 1 cut(s) 161
NdeII GATC 5 cut(s) 81, 109, 211, 216, 593
NgoMIV GCCGGC 1 cut(s) 197
NlaIII CATG 2 cut(s) 271, 493
NlaIV GGNNCC 3 cut(s) 119, 190, 558
NmeAIII GCCGAG 1 cut(s) 74
NruI TCGCGA 1 cut(s) 80
NsiI ATGCAT 1 cut(s) 706
PctI GAATGC 2 cut(s) 289, 706
PdiI GCCGGC 1 cut(s) 199
PfeI GAWTC 1 cut(s) 380
PkrI GCNGC 6 cut(s) 17, 205, 266, 376, 395, 398
PleI GAGTC 2 cut(s) 158, 613
PpsI GAGTC 2 cut(s) 158, 613
Psp124BI GAGCTC 2 cut(s) 641, 671
Psp6I CCWGG 1 cut(s) 722
PspGI CCWGG 1 cut(s) 722
PspN4I GGNNCC 3 cut(s) 119, 190, 558
PvuII CAGCTG 1 cut(s) 377
RruI TCGCGA 1 cut(s) 80
RsaI GTAC 1 cut(s) 533
RsaNI GTAC 1 cut(s) 532
RseI CAYNNNNRTG 1 cut(s) 131
SacI GAGCTC 2 cut(s) 641, 671
SaqAI TTAA 1 cut(s) 416
SatI GCNGC 6 cut(s) 16, 204, 265, 375, 394, 397
Sau3AI GATC 5 cut(s) 81, 109, 211, 216, 593
SchI GAGTC 2 cut(s) 158, 613
ScrFI CCNGG 2 cut(s) 161, 724
SduI GDGCHC 4 cut(s) 42, 191, 641, 671
SetI ASST 9 cut(s) 24, 34, 67, 297, 367, 379, 511, 641, 671
SfaNI GCATC 3 cut(s) 93, 596, 713
SgrAI CRCCGGYG 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 131
Sse9I AATT 5 cut(s) 10, 44, 278, 477, 685
SsiI CCGC 4 cut(s) 143, 150, 203, 264
SspMI CTAG 2 cut(s) 470, 540
SstI GAGCTC 2 cut(s) 641, 671
StyD4I CCNGG 2 cut(s) 159, 722
StyI CCWWGG 2 cut(s) 305, 600
TaaI ACNGT 2 cut(s) 439, 576
TaqI TCGA 1 cut(s) 258
TasI AATT 5 cut(s) 10, 44, 278, 477, 685
TatI WGTACW 1 cut(s) 531
TauI GCSGC 2 cut(s) 206, 267
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 1 cut(s) 416
Tru9I TTAA 1 cut(s) 416
TscAI CASTG 3 cut(s) 119, 294, 567
TseI GCWGC 4 cut(s) 15, 374, 393, 396
TspDTI ATGAA 3 cut(s) 301, 349, 731
TspRI CASTG 3 cut(s) 119, 294, 567
XapI RAATTY 1 cut(s) 44
XmiI GTMKAC 1 cut(s) 90
XspI CTAG 2 cut(s) 470, 540
Zsp2I ATGCAT 1 cut(s) 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.