Prupe.8G209700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0011210
Physical Location & Seq
Forward (+)
19470126 .. 19473161
3036 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G209700.1

Sequence Viewer

Length: 858 bp
ATGCGTCGTCCCACGTGTTGCCACATATCCCTAGCTTTCGTGCTCAAATTCCTCAACTTTCTTCAAGCTTTCATCGGAGTTTCAATCTTAGTCTACTCGGCATGGATGCTCAACCAGTGGAACAATCACATTCCTATAGTCCCACAACCTTCAGCTCCTTCGCCAGACTCTTCGTCTTTCTCCTCCCTCTTGTTGAGCTCCGAAACGGCCAAGACTTCTGATCAGATCACCCCTTTGAATTTTGCTGTCCATTTGGTCTCTGGGTTCGATGAGGGATTGGGATTGAATTCATTTAAGCTTCCCGCGCCTTGGTTTATCTACTCTTTTATGGGATTGGGCGTTTTGATCTGTTGCATTACTTTCATAGGTTGTATTGCAGCGGAATCAATTAATGGCTGCTGCCTGTGTTTTTACACAATACTTATAACAGTACTCGCTCTACTAGAAGCAGCTTTGGTGGCATTCATTGCAATTGATCATCGTTGGGAAAAGGATCTTCCATTTGACCCAACTGGTGAACTTGACAGTCTTCGATCTTTCGTCCAAGATAATATTGACATCTGTAAGTGGGCTGGGCTCGCTGTCATCGTATTACAGGCTTTATCTCTACTACTAGCACTGGTTCTGCGAGGCATGGTTTCTACTCACAAAGCTGACTATGACGTTGAAGATGATTATGATTTTAGGGGTAGAACTAGGGAGCCATTGTTAAATAACCAGTTAAGCCAAGCGTCTGGATCAACCAAGGGTGATGGGAGAGGGACTCATTCTGACATTTGGAGCTCACGGATAAGAGATAAGTATGGGTTGAACGCTGTGAATCAGAACGCATCAGCAAGTACGAAATCCAAGCAGTGA

Protein Analysis

286

Amino Acids

31.34

Weight (kDa)

5.84

Isoelectric Point (pI)

43.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20230 AT4G28770 AT4G28770
fragaria_vesca FvH4_2g19890 FvH4_2g19890
malus_domestica MD05G1183500.v1.1 MD10G1171300.v1.1
prunus_persica Prupe.8G209700_v2.0.a1
pyrus_communis pycom05g16850 pycom10g14770
rosa_chinensis RchiOBHm_Chr6g0285581
rosa_laevigata RLG00000012625
rosa_multiflora Rmu_sc0012495.1_g000001
rosa_roxburghii Rroxscaffold_7G00182930
rosa_rugosa Rorug06G0175800
rosa_samantha Rh6AG287300 Rh6BG288500 Rh6CG289700 Rh6DG282500
rosa_wichuraiana Rw6G024700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 425
AccI GTMKAC 1 cut(s) 93
AccII CGCG 1 cut(s) 305
AciI CCGC 2 cut(s) 303, 380
AclWI GGATC 2 cut(s) 501, 745
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 3 cut(s) 47, 238, 286
AcuI CTGAAG 1 cut(s) 135
AcvI CACGTG 1 cut(s) 15
AfaI GTAC 2 cut(s) 432, 841
AfiI CCNNNNNNNGG 1 cut(s) 309
AflIII ACRYGT 1 cut(s) 14
AgsI TTSAA 6 cut(s) 65, 84, 238, 286, 668, 811
AhdI GACNNNNNGTC 1 cut(s) 172
AluBI AGCT 8 cut(s) 35, 68, 155, 198, 298, 452, 653, 783
AluI AGCT 8 cut(s) 35, 68, 155, 198, 298, 452, 653, 783
Alw21I GWGCWC 3 cut(s) 45, 200, 785
Alw26I GTCTC 1 cut(s) 262
AlwI GGATC 2 cut(s) 501, 745
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 4 cut(s) 377, 396, 399, 449
ApoI RAATTY 3 cut(s) 47, 238, 286
AseI ATTAAT 1 cut(s) 390
AspLEI GCGC 1 cut(s) 307
AsuHPI GGTGA 3 cut(s) 220, 527, 761
BanII GRGCYC 3 cut(s) 200, 579, 785
BbrPI CACGTG 1 cut(s) 15
BbsI GAAGAC 1 cut(s) 521
Bbv12I GWGCWC 3 cut(s) 45, 200, 785
BbvI GCAGC 4 cut(s) 383, 386, 389, 461
BccI CCATC 1 cut(s) 746
BceAI ACGGC 1 cut(s) 222
BclI TGATCA 2 cut(s) 220, 475
BcoDI GTCTC 1 cut(s) 262
BfaI CTAG 4 cut(s) 32, 443, 614, 696
BfmI CTRYAG 1 cut(s) 135
BisI GCNGC 4 cut(s) 378, 397, 400, 450
BlsI GCNGC 4 cut(s) 379, 398, 401, 451
BmcAI AGTACT 1 cut(s) 432
BmeRI GACNNNNNGTC 1 cut(s) 172
BmiI GGNNCC 1 cut(s) 702
BmsI GCATC 2 cut(s) 96, 839
BpiI GAAGAC 1 cut(s) 521
BplI GAGNNNNNCTC 2 cut(s) 748, 780
BsaAI YACGTR 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 262
BsaJI CCNNGG 2 cut(s) 308, 744
BsaXI ACNNNNNCTCC 2 cut(s) 692, 722
Bsc4I CCNNNNNNNGG 1 cut(s) 309
Bse1I ACTGG 4 cut(s) 115, 517, 624, 718
Bse3DI GCAATG 1 cut(s) 465
BseDI CCNNGG 2 cut(s) 308, 744
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 309
BseMI GCAATG 1 cut(s) 465
BseNI ACTGG 4 cut(s) 115, 517, 624, 718
BseRI GAGGAG 1 cut(s) 172
BseXI GCAGC 4 cut(s) 383, 386, 389, 461
BseYI CCCAGC 1 cut(s) 572
Bsh1236I CGCG 1 cut(s) 305
BshFI GGCC 1 cut(s) 209
BsiHKAI GWGCWC 3 cut(s) 45, 200, 785
BslFI GGGAC 2 cut(s) 125, 775
BslI CCNNNNNNNGG 1 cut(s) 309
BsmAI GTCTC 1 cut(s) 262
BsmFI GGGAC 2 cut(s) 125, 775
BsmI GAATGC 1 cut(s) 461
BsnI GGCC 1 cut(s) 209
Bso31I GGTCTC 1 cut(s) 262
Bsp1286I GDGCHC 4 cut(s) 45, 200, 579, 785
Bsp143I GATC 7 cut(s) 220, 225, 345, 475, 493, 533, 737
BspACI CCGC 2 cut(s) 303, 380
BspANI GGCC 1 cut(s) 209
BspFNI CGCG 1 cut(s) 305
BspLI GGNNCC 1 cut(s) 702
BspPI GGATC 2 cut(s) 501, 745
BspTNI GGTCTC 1 cut(s) 262
BsrDI GCAATG 1 cut(s) 465
BsrI ACTGG 4 cut(s) 115, 517, 624, 718
BssECI CCNNGG 2 cut(s) 308, 744
BssMI GATC 7 cut(s) 220, 225, 345, 475, 493, 533, 737
BssT1I CCWWGG 2 cut(s) 308, 744
Bst4CI ACNGT 2 cut(s) 430, 527
Bst6I CTCTTC 1 cut(s) 175
BstAPI GCANNNNNTGC 1 cut(s) 467
BstBAI YACGTR 1 cut(s) 15
BstC8I GCNNGC 1 cut(s) 579
BstDEI CTNAG 1 cut(s) 88
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 1 cut(s) 305
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 7 cut(s) 223, 228, 348, 478, 496, 536, 740
BstMAI GTCTC 1 cut(s) 262
BstMBI GATC 7 cut(s) 220, 225, 345, 475, 493, 533, 737
BstMWI GCNNNNNNNGC 4 cut(s) 304, 458, 467, 578
BstSFI CTRYAG 1 cut(s) 135
BstUI CGCG 1 cut(s) 305
BstV1I GCAGC 4 cut(s) 383, 386, 389, 461
BstV2I GAAGAC 1 cut(s) 521
BstX2I RGATCY 1 cut(s) 493
BstXI CCANNNNNNTGG 1 cut(s) 734
BstYI RGATCY 1 cut(s) 493
BsuRI GGCC 1 cut(s) 209
BtsCI GGATG 1 cut(s) 111
BtsIMutI CAGTG 2 cut(s) 122, 617
Cac8I GCNNGC 1 cut(s) 579
CfoI GCGC 1 cut(s) 307
CseI GACGC 1 cut(s) 720
Csp6I GTAC 2 cut(s) 431, 840
CviAII CATG 2 cut(s) 102, 634
CviQI GTAC 2 cut(s) 431, 840
DdeI CTNAG 1 cut(s) 88
DpnI GATC 7 cut(s) 222, 227, 347, 477, 495, 535, 739
DpnII GATC 7 cut(s) 220, 225, 345, 475, 493, 533, 737
DriI GACNNNNNGTC 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 175
Eam1105I GACNNNNNGTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 175
Ecl136II GAGCTC 2 cut(s) 198, 783
Eco130I CCWWGG 2 cut(s) 308, 744
Eco24I GRGCYC 3 cut(s) 200, 579, 785
Eco31I GGTCTC 1 cut(s) 262
Eco53kI GAGCTC 2 cut(s) 198, 783
Eco57I CTGAAG 1 cut(s) 135
Eco72I CACGTG 1 cut(s) 15
EcoICRI GAGCTC 2 cut(s) 198, 783
EcoRI GAATTC 1 cut(s) 286
EcoT14I CCWWGG 2 cut(s) 308, 744
EcoT38I GRGCYC 3 cut(s) 200, 579, 785
ErhI CCWWGG 2 cut(s) 308, 744
FaeI CATG 2 cut(s) 105, 637
FaqI GGGAC 2 cut(s) 125, 775
FatI CATG 2 cut(s) 101, 633
FauI CCCGC 1 cut(s) 310
FbaI TGATCA 2 cut(s) 220, 475
FblI GTMKAC 1 cut(s) 93
Fnu4HI GCNGC 4 cut(s) 378, 397, 400, 450
FokI GGATG 1 cut(s) 118
FriOI GRGCYC 3 cut(s) 200, 579, 785
Fsp4HI GCNGC 4 cut(s) 378, 397, 400, 450
FspBI CTAG 4 cut(s) 32, 443, 614, 696
GlaI GCGC 1 cut(s) 306
GluI GCNGC 4 cut(s) 378, 397, 400, 450
GsaI CCCAGC 1 cut(s) 576
HaeIII GGCC 1 cut(s) 209
HgaI GACGC 1 cut(s) 720
HhaI GCGC 1 cut(s) 307
Hin1II CATG 2 cut(s) 105, 637
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HindIII AAGCTT 2 cut(s) 66, 296
HinfI GANTC 4 cut(s) 167, 383, 763, 820
HphI GGTGA 3 cut(s) 220, 527, 761
Hpy166II GTNNAC 2 cut(s) 94, 518
Hpy188I TCNGA 6 cut(s) 77, 202, 220, 225, 772, 825
Hpy188III TCNNGA 1 cut(s) 735
Hpy8I GTNNAC 2 cut(s) 94, 518
Hpy99I CGWCG 1 cut(s) 9
HpyAV CCTTC 2 cut(s) 159, 168
HpyCH4III ACNGT 2 cut(s) 430, 527
HpyCH4IV ACGT 2 cut(s) 14, 663
HpyCH4V TGCA 3 cut(s) 354, 377, 470
HpyF10VI GCNNNNNNNGC 4 cut(s) 304, 458, 467, 578
HpyF3I CTNAG 1 cut(s) 88
HpySE526I ACGT 2 cut(s) 14, 663
Hsp92II CATG 2 cut(s) 105, 637
HspAI GCGC 1 cut(s) 305
Ksp22I TGATCA 2 cut(s) 220, 475
Kzo9I GATC 7 cut(s) 220, 225, 345, 475, 493, 533, 737
LmnI GCTCC 4 cut(s) 160, 203, 700, 780
Lsp1109I GCAGC 4 cut(s) 383, 386, 389, 461
LweI GCATC 2 cut(s) 96, 839
MaeI CTAG 4 cut(s) 32, 443, 614, 696
MaeII ACGT 2 cut(s) 14, 663
MalI GATC 7 cut(s) 222, 227, 347, 477, 495, 535, 739
MboI GATC 7 cut(s) 220, 225, 345, 475, 493, 533, 737
MboII GAAGA 5 cut(s) 53, 162, 488, 521, 680
MfeI CAATTG 1 cut(s) 471
MflI RGATCY 1 cut(s) 493
MhlI GDGCHC 4 cut(s) 45, 200, 579, 785
MluCI AATT 5 cut(s) 47, 238, 286, 387, 471
MlyI GAGTC 2 cut(s) 161, 757
MnlI CCTC 6 cut(s) 62, 193, 197, 265, 623, 752
MseI TTAA 4 cut(s) 294, 390, 710, 722
MspA1I CMGCKG 1 cut(s) 380
MunI CAATTG 1 cut(s) 471
Mva1269I GAATGC 1 cut(s) 461
MvnI CGCG 1 cut(s) 305
MwoI GCNNNNNNNGC 4 cut(s) 304, 458, 467, 578
NdeII GATC 7 cut(s) 220, 225, 345, 475, 493, 533, 737
NlaIII CATG 2 cut(s) 105, 637
NlaIV GGNNCC 1 cut(s) 702
NmeAIII GCCGAG 1 cut(s) 77
PcsI WCGNNNNNNNCGW 1 cut(s) 585
PctI GAATGC 1 cut(s) 461
PfeI GAWTC 2 cut(s) 383, 820
PkrI GCNGC 4 cut(s) 379, 398, 401, 451
PleI GAGTC 2 cut(s) 161, 757
PmaCI CACGTG 1 cut(s) 15
PmlI CACGTG 1 cut(s) 15
PpsI GAGTC 2 cut(s) 161, 757
Ppu21I YACGTR 1 cut(s) 15
PshBI ATTAAT 1 cut(s) 390
PsiI TTATAA 1 cut(s) 425
Psp124BI GAGCTC 2 cut(s) 200, 785
PspCI CACGTG 1 cut(s) 15
PspFI CCCAGC 1 cut(s) 572
PspN4I GGNNCC 1 cut(s) 702
PsuI RGATCY 1 cut(s) 493
RsaI GTAC 2 cut(s) 432, 841
RsaNI GTAC 2 cut(s) 431, 840
SacI GAGCTC 2 cut(s) 200, 785
SaqAI TTAA 4 cut(s) 294, 390, 710, 722
SatI GCNGC 4 cut(s) 378, 397, 400, 450
Sau3AI GATC 7 cut(s) 220, 225, 345, 475, 493, 533, 737
ScaI AGTACT 1 cut(s) 432
SchI GAGTC 2 cut(s) 161, 757
SduI GDGCHC 4 cut(s) 45, 200, 579, 785
SfaNI GCATC 2 cut(s) 96, 839
SfcI CTRYAG 1 cut(s) 135
Sse9I AATT 5 cut(s) 47, 238, 286, 387, 471
SsiI CCGC 2 cut(s) 303, 380
SspI AATATT 1 cut(s) 553
SspMI CTAG 4 cut(s) 32, 443, 614, 696
SstI GAGCTC 2 cut(s) 200, 785
StyI CCWWGG 2 cut(s) 308, 744
TaaI ACNGT 2 cut(s) 430, 527
TaiI ACGT 2 cut(s) 17, 666
TaqI TCGA 2 cut(s) 267, 532
TasI AATT 5 cut(s) 47, 238, 286, 387, 471
TatI WGTACW 1 cut(s) 430
TfiI GAWTC 2 cut(s) 383, 820
Tru1I TTAA 4 cut(s) 294, 390, 710, 722
Tru9I TTAA 4 cut(s) 294, 390, 710, 722
TscAI CASTG 2 cut(s) 122, 624
TseI GCWGC 4 cut(s) 377, 396, 399, 449
TspDTI ATGAA 4 cut(s) 61, 279, 352, 454
TspGWI ACGGA 1 cut(s) 802
TspRI CASTG 2 cut(s) 122, 624
VspI ATTAAT 1 cut(s) 390
XapI RAATTY 3 cut(s) 47, 238, 286
XcmI CCANNNNNNNNNTGG 1 cut(s) 257
XmiI GTMKAC 1 cut(s) 93
XspI CTAG 4 cut(s) 32, 443, 614, 696
ZrmI AGTACT 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.