Rroxscaffold_7G00182930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0011210
Physical Location & Seq
Reverse (-)
22006382 .. 22009297
2916 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00182930.1

Sequence Viewer

Length: 873 bp
ATGCCGAATAATTGCTGCCACGTATGCTTAGCTTTCGTGCTCAAATTCCTCAACTTTCTTCAAGCTTTCGTCGGCGTCTCGATCATGGTCTACTCGGCGTGGATGCTTGATCAGTGGAACCATCACATTCCGGTGTTCCCACCGTCCTCCGCGCCTTCCCCGGGCTCTCCTTTCTCACTTTCGTTGGGCTCCGACGCCGGCGCGGCTTCCGATCAGATCACGCCGTTGGATTTTGCGGTCCGGTTGGTGTCTGGGTTCGATGACGGCATGGGGTTTCAATTGAATGCATTGAAGCTCCCTGCTCCTTGGTTCATCTACTCTTTTATGGGAGTGGGGGCTTTGCTCTGTTGCATTACTTTCATAGGTTGTATCGCAGCTGAATCAATCAACGGCTGCTGCCTGTGTTTCTACAGTCTGCTCATAACGGTACTAACTCTAGTGGAAGCAGCTCTTGTAGCGTTCATAGCAATTGATCACCATTGGGACAAGGATCTTCCACTTGACCCAACCGGTGAACTTGACAGTCTTCGATCTTTTATTGAAAAGAACATTGACATCTGTAAGTGGGTTGGGATAGCAATTGTTGGAATACAGGCTTTATCTCTGCTACTAGCAATAATTCTACGAGGCATGATATCTACTCATAAACCTGACTATGATGTTGAAGATGAGTATGCTGCTAGGGGTAGAACTTGGGAACCACTGCTAAATCAACAGTCAAGCCAAGCATCTGGATCAACCAAGGGTGATGGCAGAGGGACTCACTCTGACATTTGGAGCTCACGAATAAGAGATAAGTATGGATTGAGCTCTGGTGATAAATACAATTCTGTAAATCAGAATGCATCAATGAGTATGAAATCCAGGCAGTGA

Protein Analysis

290

Amino Acids

31.65

Weight (kDa)

5.41

Isoelectric Point (pI)

40.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tetraspanin PF00335 12 - 161 2e-06 Tetraspanin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20230 AT4G28770 AT4G28770
fragaria_vesca FvH4_2g19890 FvH4_2g19890
malus_domestica MD05G1183500.v1.1 MD10G1171300.v1.1
prunus_persica Prupe.8G209700_v2.0.a1
pyrus_communis pycom05g16850 pycom10g14770
rosa_chinensis RchiOBHm_Chr6g0285581
rosa_laevigata RLG00000012625
rosa_multiflora Rmu_sc0012495.1_g000001
rosa_roxburghii Rroxscaffold_7G00182930
rosa_rugosa Rorug06G0175800
rosa_samantha Rh6AG287300 Rh6BG288500 Rh6CG289700 Rh6DG282500
rosa_wichuraiana Rw6G024700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 90
AccII CGCG 2 cut(s) 152, 203
AciI CCGC 3 cut(s) 150, 203, 236
AclWI GGATC 2 cut(s) 498, 742
AcsI RAATTY 1 cut(s) 44
AcyI GRCGYC 2 cut(s) 75, 195
AfaI GTAC 1 cut(s) 429
AfiI CCNNNNNNNGG 1 cut(s) 161
AgeI ACCGGT 1 cut(s) 509
AgsI TTSAA 6 cut(s) 62, 278, 283, 292, 542, 665
AjnI CCWGG 1 cut(s) 863
AluBI AGCT 7 cut(s) 32, 65, 295, 377, 449, 780, 810
AluI AGCT 7 cut(s) 32, 65, 295, 377, 449, 780, 810
Alw21I GWGCWC 3 cut(s) 42, 782, 812
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 2 cut(s) 498, 742
Ama87I CYCGRG 1 cut(s) 160
ApeKI GCWGC 6 cut(s) 15, 374, 393, 396, 446, 677
ApoI RAATTY 1 cut(s) 44
AsiGI ACCGGT 1 cut(s) 509
AspLEI GCGC 2 cut(s) 154, 203
AspS9I GGNCC 1 cut(s) 238
AsuC2I CCSGG 2 cut(s) 161, 162
AsuHPI GGTGA 4 cut(s) 467, 524, 758, 827
AvaI CYCGRG 1 cut(s) 160
AvaII GGWCC 1 cut(s) 238
BanII GRGCYC 4 cut(s) 167, 191, 782, 812
BbsI GAAGAC 1 cut(s) 518
Bbv12I GWGCWC 3 cut(s) 42, 782, 812
BbvI GCAGC 6 cut(s) 2, 380, 383, 386, 458, 664
BccI CCATC 2 cut(s) 129, 743
BceAI ACGGC 3 cut(s) 208, 280, 406
BciT130I CCWGG 1 cut(s) 865
BclI TGATCA 2 cut(s) 109, 472
BcnI CCSGG 2 cut(s) 161, 162
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 3 cut(s) 437, 611, 681
BfmI CTRYAG 1 cut(s) 409
BglI GCCNNNNNGGC 1 cut(s) 203
BisI GCNGC 7 cut(s) 16, 204, 375, 394, 397, 447, 678
BlpI GCTNAGC 1 cut(s) 28
BlsI GCNGC 7 cut(s) 17, 205, 376, 395, 398, 448, 679
Bme1390I CCNGG 3 cut(s) 161, 162, 865
Bme18I GGWCC 1 cut(s) 238
BmeT110I CYCGRG 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 238
BmiI GGNNCC 3 cut(s) 119, 190, 699
BmrFI CCNGG 3 cut(s) 161, 162, 865
BmsI GCATC 3 cut(s) 93, 737, 854
BpiI GAAGAC 1 cut(s) 518
Bpu1102I GCTNAGC 1 cut(s) 28
BpuMI CCSGG 2 cut(s) 161, 162
BsaAI YACGTR 1 cut(s) 22
BsaHI GRCGYC 2 cut(s) 75, 195
BsaJI CCNNGG 4 cut(s) 159, 160, 305, 741
BsaWI WCCGGW 3 cut(s) 130, 240, 509
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse118I RCCGGY 2 cut(s) 197, 509
BseBI CCWGG 1 cut(s) 865
BseDI CCNNGG 4 cut(s) 159, 160, 305, 741
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 161
BseXI GCAGC 6 cut(s) 2, 380, 383, 386, 458, 664
Bsh1236I CGCG 2 cut(s) 152, 203
BshTI ACCGGT 1 cut(s) 509
BsiHKAI GWGCWC 3 cut(s) 42, 782, 812
BsiHKCI CYCGRG 1 cut(s) 160
BsiSI CCGG 5 cut(s) 131, 161, 198, 241, 510
BslFI GGGAC 2 cut(s) 497, 772
BslI CCNNNNNNNGG 1 cut(s) 161
BsmAI GTCTC 1 cut(s) 82
BsmBI CGTCTC 1 cut(s) 82
BsmFI GGGAC 2 cut(s) 497, 772
BsmI GAATGC 2 cut(s) 289, 847
BsoBI CYCGRG 1 cut(s) 160
Bsp1286I GDGCHC 5 cut(s) 42, 167, 191, 782, 812
Bsp143I GATC 8 cut(s) 81, 109, 211, 216, 472, 490, 530, 734
Bsp1720I GCTNAGC 1 cut(s) 28
BspACI CCGC 3 cut(s) 150, 203, 236
BspFNI CGCG 2 cut(s) 152, 203
BspLI GGNNCC 3 cut(s) 119, 190, 699
BspPI GGATC 2 cut(s) 498, 742
BsrFI RCCGGY 2 cut(s) 197, 509
BssAI RCCGGY 2 cut(s) 197, 509
BssECI CCNNGG 4 cut(s) 159, 160, 305, 741
BssMI GATC 8 cut(s) 81, 109, 211, 216, 472, 490, 530, 734
BssNI GRCGYC 2 cut(s) 75, 195
BssT1I CCWWGG 2 cut(s) 305, 741
Bst2UI CCWGG 1 cut(s) 865
Bst4CI ACNGT 5 cut(s) 144, 413, 427, 524, 717
BstACI GRCGYC 2 cut(s) 75, 195
BstBAI YACGTR 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 199
BstDEI CTNAG 1 cut(s) 28
BstF5I GGATG 1 cut(s) 108
BstFNI CGCG 2 cut(s) 152, 203
BstHHI GCGC 2 cut(s) 154, 203
BstKTI GATC 8 cut(s) 84, 112, 214, 219, 475, 493, 533, 737
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 8 cut(s) 81, 109, 211, 216, 472, 490, 530, 734
BstMWI GCNNNNNNNGC 4 cut(s) 24, 203, 455, 464
BstNI CCWGG 1 cut(s) 865
BstSCI CCNGG 3 cut(s) 159, 160, 863
BstSFI CTRYAG 1 cut(s) 409
BstUI CGCG 2 cut(s) 152, 203
BstV1I GCAGC 6 cut(s) 2, 380, 383, 386, 458, 664
BstV2I GAAGAC 1 cut(s) 518
BstX2I RGATCY 1 cut(s) 490
BstXI CCANNNNNNTGG 1 cut(s) 731
BstYI RGATCY 1 cut(s) 490
BtsCI GGATG 1 cut(s) 108
BtsI GCAGTG 1 cut(s) 701
BtsIMutI CAGTG 2 cut(s) 119, 701
Cac8I GCNNGC 1 cut(s) 199
CfoI GCGC 2 cut(s) 154, 203
Cfr10I RCCGGY 2 cut(s) 197, 509
Cfr13I GGNCC 1 cut(s) 238
Cfr9I CCCGGG 1 cut(s) 160
CpoI CGGWCCG 1 cut(s) 238
CseI GACGC 2 cut(s) 64, 203
Csp6I GTAC 1 cut(s) 428
CspAI ACCGGT 1 cut(s) 509
CspI CGGWCCG 1 cut(s) 238
CviAII CATG 3 cut(s) 85, 268, 631
CviQI GTAC 1 cut(s) 428
DdeI CTNAG 1 cut(s) 28
DpnI GATC 8 cut(s) 83, 111, 213, 218, 474, 492, 532, 736
DpnII GATC 8 cut(s) 81, 109, 211, 216, 472, 490, 530, 734
Ecl136II GAGCTC 2 cut(s) 780, 810
Eco130I CCWWGG 2 cut(s) 305, 741
Eco24I GRGCYC 4 cut(s) 167, 191, 782, 812
Eco32I GATATC 1 cut(s) 636
Eco47I GGWCC 1 cut(s) 238
Eco53kI GAGCTC 2 cut(s) 780, 810
Eco88I CYCGRG 1 cut(s) 160
EcoICRI GAGCTC 2 cut(s) 780, 810
EcoRII CCWGG 1 cut(s) 863
EcoRV GATATC 1 cut(s) 636
EcoT14I CCWWGG 2 cut(s) 305, 741
EcoT22I ATGCAT 2 cut(s) 289, 847
EcoT38I GRGCYC 4 cut(s) 167, 191, 782, 812
ErhI CCWWGG 2 cut(s) 305, 741
Esp3I CGTCTC 1 cut(s) 82
FaeI CATG 3 cut(s) 88, 271, 634
FalI AAGNNNNNCTT 2 cut(s) 435, 467
FaqI GGGAC 2 cut(s) 497, 772
FatI CATG 3 cut(s) 84, 267, 630
FbaI TGATCA 2 cut(s) 109, 472
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 7 cut(s) 16, 204, 375, 394, 397, 447, 678
FokI GGATG 1 cut(s) 115
FriOI GRGCYC 4 cut(s) 167, 191, 782, 812
Fsp4HI GCNGC 7 cut(s) 16, 204, 375, 394, 397, 447, 678
FspBI CTAG 3 cut(s) 437, 611, 681
GlaI GCGC 2 cut(s) 153, 202
GluI GCNGC 7 cut(s) 16, 204, 375, 394, 397, 447, 678
HapII CCGG 5 cut(s) 131, 161, 198, 241, 510
HgaI GACGC 2 cut(s) 64, 203
HhaI GCGC 2 cut(s) 154, 203
Hin1I GRCGYC 2 cut(s) 75, 195
Hin1II CATG 3 cut(s) 88, 271, 634
Hin6I GCGC 2 cut(s) 152, 201
HinP1I GCGC 2 cut(s) 152, 201
HindIII AAGCTT 1 cut(s) 63
HinfI GANTC 2 cut(s) 380, 760
HpaII CCGG 5 cut(s) 131, 161, 198, 241, 510
HphI GGTGA 4 cut(s) 467, 524, 758, 827
Hpy166II GTNNAC 2 cut(s) 91, 515
Hpy188I TCNGA 5 cut(s) 193, 211, 216, 769, 840
Hpy188III TCNNGA 3 cut(s) 79, 732, 783
Hpy8I GTNNAC 2 cut(s) 91, 515
Hpy99I CGWCG 2 cut(s) 74, 197
HpyAV CCTTC 1 cut(s) 165
HpyCH4III ACNGT 5 cut(s) 144, 413, 427, 524, 717
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 3 cut(s) 287, 351, 845
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 203, 455, 464
HpyF3I CTNAG 1 cut(s) 28
HpySE526I ACGT 1 cut(s) 21
Hsp92I GRCGYC 2 cut(s) 75, 195
Hsp92II CATG 3 cut(s) 88, 271, 634
HspAI GCGC 2 cut(s) 152, 201
KroI GCCGGC 1 cut(s) 197
KroNI GCCGGC 1 cut(s) 199
Ksp22I TGATCA 2 cut(s) 109, 472
Kzo9I GATC 8 cut(s) 81, 109, 211, 216, 472, 490, 530, 734
LmnI GCTCC 4 cut(s) 194, 300, 307, 777
Lsp1109I GCAGC 6 cut(s) 2, 380, 383, 386, 458, 664
LweI GCATC 3 cut(s) 93, 737, 854
MaeI CTAG 3 cut(s) 437, 611, 681
MaeII ACGT 1 cut(s) 21
MalI GATC 8 cut(s) 83, 111, 213, 218, 474, 492, 532, 736
MboI GATC 8 cut(s) 81, 109, 211, 216, 472, 490, 530, 734
MboII GAAGA 4 cut(s) 50, 485, 518, 677
MfeI CAATTG 3 cut(s) 278, 468, 579
MflI RGATCY 1 cut(s) 490
MhlI GDGCHC 5 cut(s) 42, 167, 191, 782, 812
MluCI AATT 7 cut(s) 10, 44, 278, 468, 579, 618, 826
MlyI GAGTC 1 cut(s) 754
MmeI TCCRAC 3 cut(s) 207, 216, 565
MnlI CCTC 4 cut(s) 59, 157, 620, 749
Mph1103I ATGCAT 2 cut(s) 289, 847
MreI CGCCGGCG 1 cut(s) 197
MroNI GCCGGC 1 cut(s) 197
MslI CAYNNNNRTG 1 cut(s) 131
MspA1I CMGCKG 1 cut(s) 377
MspI CCGG 5 cut(s) 131, 161, 198, 241, 510
MspR9I CCNGG 3 cut(s) 161, 162, 865
MunI CAATTG 3 cut(s) 278, 468, 579
Mva1269I GAATGC 2 cut(s) 289, 847
MvaI CCWGG 1 cut(s) 865
MvnI CGCG 2 cut(s) 152, 203
MwoI GCNNNNNNNGC 4 cut(s) 24, 203, 455, 464
NaeI GCCGGC 1 cut(s) 199
NciI CCSGG 2 cut(s) 161, 162
NdeII GATC 8 cut(s) 81, 109, 211, 216, 472, 490, 530, 734
NgoMIV GCCGGC 1 cut(s) 197
NlaIII CATG 3 cut(s) 88, 271, 634
NlaIV GGNNCC 3 cut(s) 119, 190, 699
NmeAIII GCCGAG 1 cut(s) 74
NsiI ATGCAT 2 cut(s) 289, 847
PctI GAATGC 2 cut(s) 289, 847
PdiI GCCGGC 1 cut(s) 199
PfeI GAWTC 1 cut(s) 380
PinAI ACCGGT 1 cut(s) 509
PkrI GCNGC 7 cut(s) 17, 205, 376, 395, 398, 448, 679
PleI GAGTC 1 cut(s) 754
PpsI GAGTC 1 cut(s) 754
Ppu21I YACGTR 1 cut(s) 22
Psp124BI GAGCTC 2 cut(s) 782, 812
Psp6I CCWGG 1 cut(s) 863
PspGI CCWGG 1 cut(s) 863
PspN4I GGNNCC 3 cut(s) 119, 190, 699
PspPI GGNCC 1 cut(s) 238
PsuI RGATCY 1 cut(s) 490
PvuII CAGCTG 1 cut(s) 377
RsaI GTAC 1 cut(s) 429
RsaNI GTAC 1 cut(s) 428
RseI CAYNNNNRTG 1 cut(s) 131
Rsr2I CGGWCCG 1 cut(s) 238
RsrII CGGWCCG 1 cut(s) 238
SacI GAGCTC 2 cut(s) 782, 812
SatI GCNGC 7 cut(s) 16, 204, 375, 394, 397, 447, 678
Sau3AI GATC 8 cut(s) 81, 109, 211, 216, 472, 490, 530, 734
Sau96I GGNCC 1 cut(s) 238
SchI GAGTC 1 cut(s) 754
ScrFI CCNGG 3 cut(s) 161, 162, 865
SduI GDGCHC 5 cut(s) 42, 167, 191, 782, 812
SfaNI GCATC 3 cut(s) 93, 737, 854
SfcI CTRYAG 1 cut(s) 409
SgrAI CRCCGGYG 1 cut(s) 197
SinI GGWCC 1 cut(s) 238
SmaI CCCGGG 1 cut(s) 162
SmiMI CAYNNNNRTG 1 cut(s) 131
Sse9I AATT 7 cut(s) 10, 44, 278, 468, 579, 618, 826
SsiI CCGC 3 cut(s) 150, 203, 236
SspMI CTAG 3 cut(s) 437, 611, 681
SstI GAGCTC 2 cut(s) 782, 812
StyD4I CCNGG 3 cut(s) 159, 160, 863
StyI CCWWGG 2 cut(s) 305, 741
TaaI ACNGT 5 cut(s) 144, 413, 427, 524, 717
TaiI ACGT 1 cut(s) 24
TaqI TCGA 3 cut(s) 80, 258, 529
TasI AATT 7 cut(s) 10, 44, 278, 468, 579, 618, 826
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 1 cut(s) 380
TscAI CASTG 2 cut(s) 119, 708
TseI GCWGC 6 cut(s) 15, 374, 393, 396, 446, 677
TspDTI ATGAA 4 cut(s) 301, 349, 451, 872
TspMI CCCGGG 1 cut(s) 160
TspRI CASTG 2 cut(s) 119, 708
VpaK11BI GGWCC 1 cut(s) 238
XapI RAATTY 1 cut(s) 44
XmaI CCCGGG 1 cut(s) 160
XmiI GTMKAC 1 cut(s) 90
XspI CTAG 3 cut(s) 437, 611, 681
Zsp2I ATGCAT 2 cut(s) 289, 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.