Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009091

Physical Location & Seq

Genomic Coordinates Forward (+)

8923305 .. 8924974

Gene Structure 1670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G20690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGATGGCGGCTCGTACTCATTGTATCAACCTTATCCCCAAAGTATGTCTTCCACAATCCTTCAGAACTGGAGAATCAGTGACTAATCTCAGATTTGATTGCGTCTCTAAGTCATCGAAGCTTTCTCTCAAGACATCATGTGGAAGATCAAGAACGCATCACCGGAGGCAAAATCTCAGCATCCGGTCCGTGTTTACTGGAATCGTGGAGGAAATGGGTGAAGTCAAGGACTTGGGAATGGCCGATCACGGAGGATTCGACCTCAAAATCGGAGCGAGAGTGGTGTTAGAGGACGTGAAGCTCGGTGACAGTATCGCCGTGAACGGTACTTGTTTAACGGTGACGGAGTTTAACGCAGAGGAGTTCACAGTAGGGTTAGCACCGGAGACGCTGAGAAAAACATCGTTGGAGGAGTTAAAGAAAGGATCTCCGGTGAATCTGGAGCGTGCGTTGCAGCCAGTGAGCAGGATGGGTGGACACGTGGTTCAGGGACACGTGGATGGGACGGGAGTGATTGAATCAATGGAGGTAGAGGGTGATTCTTTGTGGGTGAAGGTGAAAGCTGACAAGGGTTTGTTGAAATACATTGTGCCTAAAGGATTTGTGGCTGTTGATGGGACTAGCTTGACGGTTGTTGATGTGTTTGATGAAGAGAGCTGTTTCAATTTCATGATGATTGCTTATACGCAACAGAATGTAGTGATTCCGACTAAGAAGATTGGGCAGAAAGTGAATCTTGAGGTTGATATCATGGGGAAGTATGTTGAGAGGCTTCTCACCAGTGGTGGCTTCTCCAAAGGAAAAGAAAATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004746 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009987 GO:0016740 GO:0016765 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Lum_binding

Protein Analysis

271

Amino Acids

29.64

Weight (kDa)

7.62

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lum_binding	PF00677	66 - 150	3.3e-23	Lumazine binding domain
Lum_binding	PF00677	163 - 249	4e-22	Lumazine binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20690
fragaria_vesca	FvH4_5g33380 FvH4_5g33380 FvH4_5g33380 FvH4_5g33380
malus_domestica	MD09G1247800.v1.1 MD17G1240700.v1.1
prunus_persica	Prupe.3G137500_v2.0.a1 Prupe.3G137500_v2.0.a1 Prupe.3G137500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0232111
rosa_laevigata	RLG00000001390
rosa_multiflora	Rmu_co8217730.1_g000001 Rmu_sc0000616.1_g000009 Rmu_sc0004618.1_g000003
rosa_roxburghii	Rroxscaffold_3G00228800
rosa_rugosa	Rorug07G0269300
rosa_samantha	Rh7AG423700 Rh7BG397800 Rh7CG444200 Rh7DG415900
rosa_wichuraiana	Rw7G035050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	8
AclWI	GGATC	1 cut(s)	433
AcoI	YGGCCR	1 cut(s)	240
AcuI	CTGAAG	1 cut(s)	46
AcvI	CACGTG	2 cut(s)	481, 496
AfaI	GTAC	2 cut(s)	16, 328
AflIII	ACRYGT	2 cut(s)	478, 493
AgsI	TTSAA	3 cut(s)	518, 580, 664
AjiI	CACGTC	1 cut(s)	295
AloI	GAACNNNNNNTCC	2 cut(s)	468, 500
AluBI	AGCT	5 cut(s)	121, 301, 563, 624, 657
AluI	AGCT	5 cut(s)	121, 301, 563, 624, 657
Alw26I	GTCTC	2 cut(s)	109, 380
AlwI	GGATC	1 cut(s)	433
AoxI	GGCC	1 cut(s)	240
ApeKI	GCWGC	1 cut(s)	454
AspS9I	GGNCC	1 cut(s)	186
AsuHPI	GGTGA	9 cut(s)	152, 230, 317, 352, 445, 548, 562, 568, 769
AvaII	GGWCC	1 cut(s)	186
BbrPI	CACGTG	2 cut(s)	481, 496
BbsI	GAAGAC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	466
BccI	CCATC	3 cut(s)	463, 494, 608
BceAI	ACGGC	1 cut(s)	302
BcoDI	GTCTC	2 cut(s)	109, 380
BfaI	CTAG	1 cut(s)	621
BisI	GCNGC	2 cut(s)	9, 455
BlsI	GCNGC	2 cut(s)	10, 456
Bme18I	GGWCC	1 cut(s)	186
BmgBI	CACGTC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	186
BmsI	GCATC	2 cut(s)	166, 189
BpiI	GAAGAC	1 cut(s)	41
BpmI	CTGGAG	2 cut(s)	90, 461
BpuEI	CTTGAG	2 cut(s)	113, 758
BsaAI	YACGTR	2 cut(s)	481, 496
BsaWI	WCCGGW	4 cut(s)	162, 183, 382, 430
BsaXI	ACNNNNNCTCC	6 cut(s)	63, 93, 264, 294, 434, 464
Bse1I	ACTGG	4 cut(s)	73, 202, 458, 780
BseGI	GGATG	3 cut(s)	180, 474, 505
BseMII	CTCAG	3 cut(s)	103, 190, 383
BseNI	ACTGG	4 cut(s)	73, 202, 458, 780
BseRI	GAGGAG	2 cut(s)	374, 425
BseXI	GCAGC	1 cut(s)	466
BshFI	GGCC	1 cut(s)	242
BsiSI	CCGG	4 cut(s)	163, 184, 383, 431
BslFI	GGGAC	3 cut(s)	504, 517, 631
BsmAI	GTCTC	2 cut(s)	109, 380
BsmBI	CGTCTC	2 cut(s)	109, 380
BsmFI	GGGAC	3 cut(s)	504, 517, 631
BsnI	GGCC	1 cut(s)	242
Bsp143I	GATC	3 cut(s)	146, 244, 425
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	1 cut(s)	242
BspCNI	CTCAG	3 cut(s)	102, 189, 384
BspHI	TCATGA	1 cut(s)	669
BspPI	GGATC	1 cut(s)	433
BsrI	ACTGG	4 cut(s)	73, 202, 458, 780
BssMI	GATC	3 cut(s)	146, 244, 425
Bst4CI	ACNGT	5 cut(s)	311, 326, 340, 370, 631
Bst6I	CTCTTC	1 cut(s)	645
BstBAI	YACGTR	2 cut(s)	481, 496
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	5 cut(s)	89, 108, 176, 392, 711
BstF5I	GGATG	3 cut(s)	180, 474, 505
BstKTI	GATC	3 cut(s)	149, 247, 428
BstMAI	GTCTC	2 cut(s)	109, 380
BstMBI	GATC	3 cut(s)	146, 244, 425
BstMWI	GCNNNNNNNGC	1 cut(s)	451
BstV1I	GCAGC	1 cut(s)	466
BstV2I	GAAGAC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	425
BstYI	RGATCY	1 cut(s)	425
BsuRI	GGCC	1 cut(s)	242
BtrI	CACGTC	1 cut(s)	295
BtsCI	GGATG	3 cut(s)	180, 474, 505
BtsIMutI	CAGTG	3 cut(s)	84, 465, 787
Cac8I	GCNNGC	1 cut(s)	447
CciI	TCATGA	1 cut(s)	669
Cfr13I	GGNCC	1 cut(s)	186
CpoI	CGGWCCG	1 cut(s)	186
CseI	GACGC	2 cut(s)	91, 397
Csp6I	GTAC	2 cut(s)	15, 327
CspI	CGGWCCG	1 cut(s)	186
CviAII	CATG	3 cut(s)	138, 670, 751
CviQI	GTAC	2 cut(s)	15, 327
DdeI	CTNAG	5 cut(s)	89, 108, 176, 392, 711
DpnI	GATC	3 cut(s)	148, 246, 427
DpnII	GATC	3 cut(s)	146, 244, 425
EaeI	YGGCCR	1 cut(s)	240
Eam1104I	CTCTTC	1 cut(s)	645
EarI	CTCTTC	1 cut(s)	645
Eco32I	GATATC	1 cut(s)	748
Eco47I	GGWCC	1 cut(s)	186
Eco57I	CTGAAG	1 cut(s)	46
Eco72I	CACGTG	2 cut(s)	481, 496
EcoRV	GATATC	1 cut(s)	748
Esp3I	CGTCTC	2 cut(s)	109, 380
FaeI	CATG	3 cut(s)	141, 673, 754
FaiI	YATR	6 cut(s)	46, 139, 671, 684, 752, 762
FalI	AAGNNNNNCTT	4 cut(s)	33, 65, 720, 752
FaqI	GGGAC	3 cut(s)	504, 517, 631
FatI	CATG	3 cut(s)	137, 669, 750
Fnu4HI	GCNGC	2 cut(s)	9, 455
FokI	GGATG	3 cut(s)	167, 481, 512
Fsp4HI	GCNGC	2 cut(s)	9, 455
FspBI	CTAG	1 cut(s)	621
GluI	GCNGC	2 cut(s)	9, 455
GsuI	CTGGAG	2 cut(s)	90, 461
HaeIII	GGCC	1 cut(s)	242
HapII	CCGG	4 cut(s)	163, 184, 383, 431
HgaI	GACGC	2 cut(s)	91, 397
Hin1II	CATG	3 cut(s)	141, 673, 754
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	8 cut(s)	74, 201, 255, 436, 518, 539, 703, 733
HpaII	CCGG	4 cut(s)	163, 184, 383, 431
HphI	GGTGA	9 cut(s)	152, 230, 317, 352, 445, 548, 562, 568, 769
Hpy166II	GTNNAC	4 cut(s)	195, 322, 366, 476
Hpy188I	TCNGA	4 cut(s)	65, 92, 272, 708
Hpy188III	TCNNGA	5 cut(s)	130, 150, 440, 670, 737
Hpy8I	GTNNAC	4 cut(s)	195, 322, 366, 476
HpyAV	CCTTC	2 cut(s)	70, 547
HpyCH4III	ACNGT	5 cut(s)	311, 326, 340, 370, 631
HpyCH4IV	ACGT	3 cut(s)	294, 480, 495
HpyCH4V	TGCA	1 cut(s)	454
HpyF10VI	GCNNNNNNNGC	1 cut(s)	451
HpyF3I	CTNAG	5 cut(s)	89, 108, 176, 392, 711
HpySE526I	ACGT	3 cut(s)	294, 480, 495
Hsp92II	CATG	3 cut(s)	141, 673, 754
Kzo9I	GATC	3 cut(s)	146, 244, 425
LmnI	GCTCC	2 cut(s)	272, 442
Lsp1109I	GCAGC	1 cut(s)	466
LweI	GCATC	2 cut(s)	166, 189
MaeI	CTAG	1 cut(s)	621
MaeII	ACGT	3 cut(s)	294, 480, 495
MaeIII	GTNAC	3 cut(s)	79, 305, 340
MalI	GATC	3 cut(s)	148, 246, 427
MboI	GATC	3 cut(s)	146, 244, 425
MboII	GAAGA	4 cut(s)	41, 156, 662, 727
MflI	RGATCY	1 cut(s)	425
MluCI	AATT	1 cut(s)	664
MmeI	TCCRAC	2 cut(s)	387, 731
MseI	TTAA	3 cut(s)	335, 351, 416
MslI	CAYNNNNRTG	1 cut(s)	498
MspI	CCGG	4 cut(s)	163, 184, 383, 431
MwoI	GCNNNNNNNGC	1 cut(s)	451
NdeII	GATC	3 cut(s)	146, 244, 425
NlaIII	CATG	3 cut(s)	141, 673, 754
NmuCI	GTSAC	3 cut(s)	79, 305, 340
PagI	TCATGA	1 cut(s)	669
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PfeI	GAWTC	8 cut(s)	74, 201, 255, 436, 518, 539, 703, 733
PkrI	GCNGC	2 cut(s)	10, 456
PmaCI	CACGTG	2 cut(s)	481, 496
PmlI	CACGTG	2 cut(s)	481, 496
Ppu21I	YACGTR	2 cut(s)	481, 496
PspCI	CACGTG	2 cut(s)	481, 496
PspPI	GGNCC	1 cut(s)	186
PsuI	RGATCY	1 cut(s)	425
RsaI	GTAC	2 cut(s)	16, 328
RsaNI	GTAC	2 cut(s)	15, 327
RseI	CAYNNNNRTG	1 cut(s)	498
Rsr2I	CGGWCCG	1 cut(s)	186
RsrII	CGGWCCG	1 cut(s)	186
SaqAI	TTAA	3 cut(s)	335, 351, 416
SatI	GCNGC	2 cut(s)	9, 455
Sau3AI	GATC	3 cut(s)	146, 244, 425
Sau96I	GGNCC	1 cut(s)	186
SfaNI	GCATC	2 cut(s)	166, 189
SinI	GGWCC	1 cut(s)	186
SmiMI	CAYNNNNRTG	1 cut(s)	498
SmlI	CTYRAG	2 cut(s)	128, 737
SmoI	CTYRAG	2 cut(s)	128, 737
Sse9I	AATT	1 cut(s)	664
SsiI	CCGC	1 cut(s)	8
SspI	AATATT	1 cut(s)	811
SspMI	CTAG	1 cut(s)	621
TaaI	ACNGT	5 cut(s)	311, 326, 340, 370, 631
TaiI	ACGT	3 cut(s)	297, 483, 498
TaqI	TCGA	2 cut(s)	116, 258
TasI	AATT	1 cut(s)	664
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	8 cut(s)	74, 201, 255, 436, 518, 539, 703, 733
Tru1I	TTAA	3 cut(s)	335, 351, 416
Tru9I	TTAA	3 cut(s)	335, 351, 416
TscAI	CASTG	3 cut(s)	84, 465, 787
TseFI	GTSAC	3 cut(s)	79, 305, 340
TseI	GCWGC	1 cut(s)	454
Tsp45I	GTSAC	3 cut(s)	79, 305, 340
TspDTI	ATGAA	2 cut(s)	658, 663
TspGWI	ACGGA	3 cut(s)	178, 264, 359
TspRI	CASTG	3 cut(s)	84, 465, 787
VpaK11BI	GGWCC	1 cut(s)	186
XspI	CTAG	1 cut(s)	621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.