Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0009091

Physical Location & Seq

Genomic Coordinates Reverse (-)

14972116 .. 14973751

Gene Structure 1636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001390

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCAGTTTGTTTCTCTCTCACTTCACTCTCACCAACTCCTCAAACCTCCTCCTCTGGTCCAACAATGGCAACCCTAAACACCTTCTACACCATCTCCTCCAAAACCCTAGCCAGATTCACCTTCAACCCCCTCTCCAAACCCTCCACTCTAAACCTCTTCGCCAAACCGCCCCTCACCCATCTCCGATCTCCTCCCCGCAACACAATCCGGTCCCTCTTCACCGGAATCGTCGAGGAAATGGGCCAAGTCAAGCAGCTCGGCGCCTCCGACGGCGGCGGCTTCGACATGAGAATCGGCGCCGCCACCGTCCTCGACGGAGTCCGCCTCGGCGACAGCATCGCCGTCAACGGCACCTGCCTCACCGTCACGGAATTCGACGCCTCTCATTTCACCGTCGGCCTGGCGCCGGAGACGCTGCGGAAGACCTCGCTGGTGGAGCTCGAGCCGGGTTCGCTGGTGAATCTGGAGCGGGCGGTGCTGCCGACGAGCCGGATGGGCGGGCATTTCTTGCAGGGACACGTGGACGGCACCGGCGAGATAGTGTCGATGGTGCCGGAGGAGGATTCGCTGTGGATTAAGGTGAAGACGACGAAGGAGATACTCAAGTATGTGGTGCCGAAAGGGTATATAGCTGTGGACGGGACTAGTCTGACTGTGGTGGATGTGTTTGATGATGAAGAGTTGATATACTGGGGAAATATGTGGAGAGGCTTCTCAGTAGTGGGTTTGTTGACTCGATCAAGTCGAAATAGTGGTTCAAAGCATGGAGAGGAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004746 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009987 GO:0016740 GO:0016765 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Lum_binding

Protein Analysis

261

Amino Acids

28.06

Weight (kDa)

5.97

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lum_binding	PF00677	75 - 159	3.4e-22	Lumazine binding domain
Lum_binding	PF00677	172 - 224	2e-13	Lumazine binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20690
fragaria_vesca	FvH4_5g33380 FvH4_5g33380 FvH4_5g33380 FvH4_5g33380
malus_domestica	MD09G1247800.v1.1 MD17G1240700.v1.1
prunus_persica	Prupe.3G137500_v2.0.a1 Prupe.3G137500_v2.0.a1 Prupe.3G137500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0232111
rosa_laevigata	RLG00000001390
rosa_multiflora	Rmu_co8217730.1_g000001 Rmu_sc0000616.1_g000009 Rmu_sc0004618.1_g000003
rosa_roxburghii	Rroxscaffold_3G00228800
rosa_rugosa	Rorug07G0269300
rosa_samantha	Rh7AG423700 Rh7BG397800 Rh7CG444200 Rh7DG415900
rosa_wichuraiana	Rw7G035050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	365
Acc36I	ACCTGC	1 cut(s)	365
AccB1I	GGYRCC	7 cut(s)	263, 299, 353, 406, 530, 553, 616
AccBSI	CCGCTC	1 cut(s)	472
AcsI	RAATTY	1 cut(s)	374
AcvI	CACGTG	1 cut(s)	523
AcyI	GRCGYC	4 cut(s)	264, 300, 381, 407
AfiI	CCNNNNNNNGG	1 cut(s)	409
AflIII	ACRYGT	1 cut(s)	520
AgsI	TTSAA	2 cut(s)	127, 762
AhlI	ACTAGT	1 cut(s)	647
AjnI	CCWGG	1 cut(s)	402
AluBI	AGCT	3 cut(s)	259, 442, 635
AluI	AGCT	3 cut(s)	259, 442, 635
Alw21I	GWGCWC	1 cut(s)	444
Alw26I	GTCTC	1 cut(s)	407
Ama87I	CYCGRG	1 cut(s)	443
AoxI	GGCC	2 cut(s)	244, 400
ApeKI	GCWGC	3 cut(s)	256, 418, 481
ApoI	RAATTY	1 cut(s)	374
AspLEI	GCGC	3 cut(s)	266, 302, 409
AspS9I	GGNCC	3 cut(s)	59, 213, 244
AsuC2I	CCSGG	1 cut(s)	450
AsuHPI	GGTGA	8 cut(s)	24, 112, 169, 214, 355, 385, 472, 595
AvaI	CYCGRG	1 cut(s)	443
AvaII	GGWCC	2 cut(s)	59, 213
BaeI	ACNNNNGTAYC	2 cut(s)	593, 626
BanI	GGYRCC	7 cut(s)	263, 299, 353, 406, 530, 553, 616
BanII	GRGCYC	1 cut(s)	444
BbrPI	CACGTG	1 cut(s)	523
BbsI	GAAGAC	2 cut(s)	431, 593
Bbv12I	GWGCWC	1 cut(s)	444
BbvI	GCAGC	3 cut(s)	268, 405, 468
BccI	CCATC	4 cut(s)	101, 189, 490, 544
BceAI	ACGGC	4 cut(s)	289, 329, 367, 544
BciT130I	CCWGG	1 cut(s)	404
BcnI	CCSGG	1 cut(s)	450
BcoDI	GTCTC	1 cut(s)	407
BcuI	ACTAGT	1 cut(s)	647
BfaI	CTAG	2 cut(s)	110, 648
BfoI	RGCGCY	3 cut(s)	267, 303, 410
BfuAI	ACCTGC	1 cut(s)	365
BglI	GCCNNNNNGGC	1 cut(s)	498
BisI	GCNGC	6 cut(s)	257, 277, 280, 303, 419, 482
BlsI	GCNGC	6 cut(s)	258, 278, 281, 304, 420, 483
Bme1390I	CCNGG	2 cut(s)	404, 450
Bme18I	GGWCC	2 cut(s)	59, 213
BmeT110I	CYCGRG	1 cut(s)	443
BmgT120I	GGNCC	3 cut(s)	59, 213, 244
BmiI	GGNNCC	8 cut(s)	215, 265, 301, 355, 408, 532, 555, 618
BmrFI	CCNGG	2 cut(s)	404, 450
BmrI	ACTGGG	1 cut(s)	703
BmsI	GCATC	1 cut(s)	348
BmuI	ACTGGG	1 cut(s)	703
BpiI	GAAGAC	2 cut(s)	431, 593
BplI	GAGNNNNNCTC	2 cut(s)	312, 344
BpmI	CTGGAG	1 cut(s)	488
BpuEI	CTTGAG	1 cut(s)	590
BpuMI	CCSGG	1 cut(s)	450
BsaAI	YACGTR	1 cut(s)	523
BsaHI	GRCGYC	4 cut(s)	264, 300, 381, 407
BsaJI	CCNNGG	1 cut(s)	328
BsaWI	WCCGGW	2 cut(s)	210, 224
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 110, 119, 149
Bsc4I	CCNNNNNNNGG	1 cut(s)	409
Bse118I	RCCGGY	1 cut(s)	533
Bse1I	ACTGG	1 cut(s)	698
BseBI	CCWGG	1 cut(s)	404
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	2 cut(s)	501, 670
BseLI	CCNNNNNNNGG	1 cut(s)	409
BseMII	CTCAG	1 cut(s)	732
BseNI	ACTGG	1 cut(s)	698
BseRI	GAGGAG	6 cut(s)	30, 40, 43, 88, 183, 575
BseXI	GCAGC	3 cut(s)	268, 405, 468
BshFI	GGCC	2 cut(s)	246, 402
BshNI	GGYRCC	7 cut(s)	263, 299, 353, 406, 530, 553, 616
BsiHKAI	GWGCWC	1 cut(s)	444
BsiHKCI	CYCGRG	1 cut(s)	443
BsiSI	CCGG	7 cut(s)	211, 225, 410, 449, 493, 534, 557
BslFI	GGGAC	3 cut(s)	199, 531, 658
BslI	CCNNNNNNNGG	1 cut(s)	409
BsmAI	GTCTC	1 cut(s)	407
BsmBI	CGTCTC	1 cut(s)	407
BsmFI	GGGAC	3 cut(s)	199, 531, 658
BsnI	GGCC	2 cut(s)	246, 402
BsoBI	CYCGRG	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp143I	GATC	2 cut(s)	188, 740
BspANI	GGCC	2 cut(s)	246, 402
BspCNI	CTCAG	1 cut(s)	731
BspLI	GGNNCC	8 cut(s)	215, 265, 301, 355, 408, 532, 555, 618
BspMI	ACCTGC	1 cut(s)	365
BspT107I	GGYRCC	7 cut(s)	263, 299, 353, 406, 530, 553, 616
BsrBI	CCGCTC	1 cut(s)	472
BsrFI	RCCGGY	1 cut(s)	533
BsrI	ACTGG	1 cut(s)	698
BssAI	RCCGGY	1 cut(s)	533
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	2 cut(s)	188, 740
BssNI	GRCGYC	4 cut(s)	264, 300, 381, 407
Bst2UI	CCWGG	1 cut(s)	404
Bst4CI	ACNGT	5 cut(s)	310, 367, 397, 658, 780
Bst6I	CTCTTC	3 cut(s)	164, 224, 675
BstACI	GRCGYC	4 cut(s)	264, 300, 381, 407
BstAPI	GCANNNNNTGC	1 cut(s)	511
BstBAI	YACGTR	1 cut(s)	523
BstC8I	GCNNGC	2 cut(s)	474, 503
BstDEI	CTNAG	1 cut(s)	718
BstF5I	GGATG	2 cut(s)	501, 670
BstH2I	RGCGCY	3 cut(s)	267, 303, 410
BstHHI	GCGC	3 cut(s)	266, 302, 409
BstKTI	GATC	2 cut(s)	191, 743
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	2 cut(s)	188, 740
BstMWI	GCNNNNNNNGC	6 cut(s)	415, 439, 454, 478, 498, 511
BstNI	CCWGG	1 cut(s)	404
BstSCI	CCNGG	2 cut(s)	402, 448
BstV1I	GCAGC	3 cut(s)	268, 405, 468
BstV2I	GAAGAC	2 cut(s)	431, 593
BsuRI	GGCC	2 cut(s)	246, 402
BtgZI	GCGATG	1 cut(s)	325
BtsCI	GGATG	2 cut(s)	501, 670
BveI	ACCTGC	1 cut(s)	365
Cac8I	GCNNGC	2 cut(s)	474, 503
CfoI	GCGC	3 cut(s)	266, 302, 409
Cfr10I	RCCGGY	1 cut(s)	533
Cfr13I	GGNCC	3 cut(s)	59, 213, 244
CseI	GACGC	2 cut(s)	389, 424
CviAII	CATG	2 cut(s)	289, 767
DdeI	CTNAG	1 cut(s)	718
DinI	GGCGCC	3 cut(s)	265, 301, 408
DpnI	GATC	2 cut(s)	190, 742
DpnII	GATC	2 cut(s)	188, 740
Eam1104I	CTCTTC	3 cut(s)	164, 224, 675
EarI	CTCTTC	3 cut(s)	164, 224, 675
EciI	GGCGGA	1 cut(s)	314
Ecl136II	GAGCTC	1 cut(s)	442
Eco24I	GRGCYC	1 cut(s)	444
Eco47I	GGWCC	2 cut(s)	59, 213
Eco53kI	GAGCTC	1 cut(s)	442
Eco72I	CACGTG	1 cut(s)	523
Eco88I	CYCGRG	1 cut(s)	443
EcoICRI	GAGCTC	1 cut(s)	442
EcoRI	GAATTC	1 cut(s)	374
EcoRII	CCWGG	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	444
EgeI	GGCGCC	3 cut(s)	265, 301, 408
EheI	GGCGCC	3 cut(s)	265, 301, 408
Esp3I	CGTCTC	1 cut(s)	407
FaeI	CATG	2 cut(s)	292, 770
FaiI	YATR	7 cut(s)	290, 612, 630, 632, 691, 704, 768
FaqI	GGGAC	3 cut(s)	199, 531, 658
FatI	CATG	2 cut(s)	288, 766
FauI	CCCGC	3 cut(s)	206, 465, 494
Fnu4HI	GCNGC	6 cut(s)	257, 277, 280, 303, 419, 482
FokI	GGATG	2 cut(s)	508, 677
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	6 cut(s)	257, 277, 280, 303, 419, 482
FspBI	CTAG	2 cut(s)	110, 648
GlaI	GCGC	3 cut(s)	265, 301, 408
GluI	GCNGC	6 cut(s)	257, 277, 280, 303, 419, 482
GsuI	CTGGAG	1 cut(s)	488
HaeII	RGCGCY	3 cut(s)	267, 303, 410
HaeIII	GGCC	2 cut(s)	246, 402
HapII	CCGG	7 cut(s)	211, 225, 410, 449, 493, 534, 557
HgaI	GACGC	2 cut(s)	389, 424
HhaI	GCGC	3 cut(s)	266, 302, 409
Hin1I	GRCGYC	4 cut(s)	264, 300, 381, 407
Hin1II	CATG	2 cut(s)	292, 770
Hin6I	GCGC	3 cut(s)	264, 300, 407
HinP1I	GCGC	3 cut(s)	264, 300, 407
HincII	GTYRAC	2 cut(s)	349, 735
HindII	GTYRAC	2 cut(s)	349, 735
HinfI	GANTC	7 cut(s)	117, 228, 294, 321, 463, 566, 736
HpaII	CCGG	7 cut(s)	211, 225, 410, 449, 493, 534, 557
HphI	GGTGA	8 cut(s)	24, 112, 169, 214, 355, 385, 472, 595
Hpy166II	GTNNAC	4 cut(s)	349, 526, 640, 735
Hpy188I	TCNGA	3 cut(s)	188, 271, 654
Hpy188III	TCNNGA	1 cut(s)	467
Hpy8I	GTNNAC	4 cut(s)	349, 526, 640, 735
Hpy99I	CGWCG	7 cut(s)	236, 275, 320, 383, 401, 490, 595
HpyAV	CCTTC	3 cut(s)	94, 133, 589
HpyCH4III	ACNGT	5 cut(s)	310, 367, 397, 658, 780
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	1 cut(s)	514
HpyF10VI	GCNNNNNNNGC	6 cut(s)	415, 439, 454, 478, 498, 511
HpyF3I	CTNAG	1 cut(s)	718
HpySE526I	ACGT	1 cut(s)	522
Hsp92I	GRCGYC	4 cut(s)	264, 300, 381, 407
Hsp92II	CATG	2 cut(s)	292, 770
HspAI	GCGC	3 cut(s)	264, 300, 407
KasI	GGCGCC	3 cut(s)	263, 299, 406
Kzo9I	GATC	2 cut(s)	188, 740
LmnI	GCTCC	2 cut(s)	439, 469
Lsp1109I	GCAGC	3 cut(s)	268, 405, 468
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	2 cut(s)	110, 648
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	2 cut(s)	190, 742
MbiI	CCGCTC	1 cut(s)	472
MboI	GATC	2 cut(s)	188, 740
MboII	GAAGA	5 cut(s)	151, 211, 436, 598, 692
MhlI	GDGCHC	1 cut(s)	444
MluCI	AATT	1 cut(s)	374
Mly113I	GGCGCC	3 cut(s)	264, 300, 407
MlyI	GAGTC	2 cut(s)	330, 730
MmeI	TCCRAC	2 cut(s)	86, 294
MseI	TTAA	1 cut(s)	579
MspI	CCGG	7 cut(s)	211, 225, 410, 449, 493, 534, 557
MspR9I	CCNGG	2 cut(s)	404, 450
MvaI	CCWGG	1 cut(s)	404
MwoI	GCNNNNNNNGC	6 cut(s)	415, 439, 454, 478, 498, 511
NarI	GGCGCC	3 cut(s)	264, 300, 407
NciI	CCSGG	1 cut(s)	450
NdeII	GATC	2 cut(s)	188, 740
NlaIII	CATG	2 cut(s)	292, 770
NlaIV	GGNNCC	8 cut(s)	215, 265, 301, 355, 408, 532, 555, 618
NmeAIII	GCCGAG	2 cut(s)	240, 309
NmuCI	GTSAC	1 cut(s)	367
PaeR7I	CTCGAG	1 cut(s)	443
PaqCI	CACCTGC	1 cut(s)	365
PcsI	WCGNNNNNNNCGW	3 cut(s)	267, 534, 745
PfeI	GAWTC	5 cut(s)	117, 228, 294, 463, 566
PflFI	GACNNNGTC	1 cut(s)	320
PkrI	GCNGC	6 cut(s)	258, 278, 281, 304, 420, 483
PleI	GAGTC	2 cut(s)	329, 730
PluTI	GGCGCC	3 cut(s)	267, 303, 410
PmaCI	CACGTG	1 cut(s)	523
PmlI	CACGTG	1 cut(s)	523
PpsI	GAGTC	2 cut(s)	329, 730
Ppu21I	YACGTR	1 cut(s)	523
Psp124BI	GAGCTC	1 cut(s)	444
Psp6I	CCWGG	1 cut(s)	402
PspCI	CACGTG	1 cut(s)	523
PspGI	CCWGG	1 cut(s)	402
PspN4I	GGNNCC	8 cut(s)	215, 265, 301, 355, 408, 532, 555, 618
PspPI	GGNCC	3 cut(s)	59, 213, 244
PspXI	VCTCGAGB	1 cut(s)	443
PsyI	GACNNNGTC	1 cut(s)	320
SacI	GAGCTC	1 cut(s)	444
SaqAI	TTAA	1 cut(s)	579
SatI	GCNGC	6 cut(s)	257, 277, 280, 303, 419, 482
Sau3AI	GATC	2 cut(s)	188, 740
Sau96I	GGNCC	3 cut(s)	59, 213, 244
SchI	GAGTC	2 cut(s)	330, 730
ScrFI	CCNGG	2 cut(s)	404, 450
SduI	GDGCHC	1 cut(s)	444
SfaNI	GCATC	1 cut(s)	348
SfoI	GGCGCC	3 cut(s)	265, 301, 408
Sfr274I	CTCGAG	1 cut(s)	443
SgrAI	CRCCGGYG	1 cut(s)	533
SinI	GGWCC	2 cut(s)	59, 213
SlaI	CTCGAG	1 cut(s)	443
SmlI	CTYRAG	2 cut(s)	443, 605
SmoI	CTYRAG	2 cut(s)	443, 605
SpeI	ACTAGT	1 cut(s)	647
Sse9I	AATT	1 cut(s)	374
SspDI	GGCGCC	3 cut(s)	263, 299, 406
SspMI	CTAG	2 cut(s)	110, 648
SstI	GAGCTC	1 cut(s)	444
StyD4I	CCNGG	2 cut(s)	402, 448
TaaI	ACNGT	5 cut(s)	310, 367, 397, 658, 780
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	8 cut(s)	234, 285, 315, 378, 444, 548, 739, 748
TasI	AATT	1 cut(s)	374
TauI	GCSGC	3 cut(s)	279, 282, 305
TfiI	GAWTC	5 cut(s)	117, 228, 294, 463, 566
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	3 cut(s)	256, 418, 481
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	1 cut(s)	693
TspGWI	ACGGA	2 cut(s)	333, 386
Tth111I	GACNNNGTC	1 cut(s)	320
VpaK11BI	GGWCC	2 cut(s)	59, 213
XapI	RAATTY	1 cut(s)	374
XhoI	CTCGAG	1 cut(s)	443
XspI	CTAG	2 cut(s)	110, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.