Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0009091

Physical Location & Seq

Genomic Coordinates Reverse (-)

13193288 .. 13195272

Gene Structure 1985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00228800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCAACCCTAAACACCTTCTACACCATCTCCTCCAAAACCCTAGCCAGATTCACCTTCAACCCCCTCTCCAAACCCTCCACTCTAAACCTCTTCTCCAAACCGCCCCTCACCCATCTCCGATCTCCTCCCCGCAACACAATCCGGTCCCTCTTCACCGGAATCGTTGAGGAAATGGGCGAAGTCAAGCAGCTCGGCGCCTCCGACAGCGGCGGCTTCGACATGAGAATCGGCGCCGCCACCGTCCTCGACGGCGTCCGCCTCGGCGACAGCATCGCCGTCAACGGCACCTGCCTCACCGTCACGGAGTTCGACGATTCTCATTTCACCGTCGGCCTGGCGCCGGAGACGCTGCGGAAGACCTCGCTGGTGGAGCTCGAGCCGGGTTCGCTGGTGAATCTGGAGCGGGCGGTGCTGCCGACGAGCCGGATGGGCGGGCATTTCTTGCAGGGACACGTGGACGGCACCGGCGAGATAGTGTCGATGGTGCCGGAGGAGGATTCGCTGTGGATCAAGGTGAAGACGACGAAGGAGATACTCAAGTATGTGGTGCCGAAAGGGTATATAGCTGTGGATGGGACTAGTCTGACTGTGGTGGATGTGTTTGATGATCAAGAGTGCTTCAATTTCATGCTGGTGGCTTATACTCAGCAGAAGGTGGTGATTCCTTTGAAGAAGGTTGGGCAGAAGGTGAATTTGGAGGTTGATATACTGGGGAAATATGTGGAGAGGCTTCTCAGTAGTGGGTTTCTTGACTCCATCAAGTCGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004746 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009987 GO:0016740 GO:0016765 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Lum_binding

Protein Analysis

257

Amino Acids

28.1

Weight (kDa)

6.12

Isoelectric Point (pI)

33.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lum_binding	PF00677	53 - 137	1.3e-22	Lumazine binding domain
Lum_binding	PF00677	150 - 236	1.3e-22	Lumazine binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20690
fragaria_vesca	FvH4_5g33380 FvH4_5g33380 FvH4_5g33380 FvH4_5g33380
malus_domestica	MD09G1247800.v1.1 MD17G1240700.v1.1
prunus_persica	Prupe.3G137500_v2.0.a1 Prupe.3G137500_v2.0.a1 Prupe.3G137500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0232111
rosa_laevigata	RLG00000001390
rosa_multiflora	Rmu_co8217730.1_g000001 Rmu_sc0000616.1_g000009 Rmu_sc0004618.1_g000003
rosa_roxburghii	Rroxscaffold_3G00228800
rosa_rugosa	Rorug07G0269300
rosa_samantha	Rh7AG423700 Rh7BG397800 Rh7CG444200 Rh7DG415900
rosa_wichuraiana	Rw7G035050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	299
Acc36I	ACCTGC	1 cut(s)	299
AccB1I	GGYRCC	7 cut(s)	197, 233, 287, 340, 464, 487, 550
AccBSI	CCGCTC	1 cut(s)	406
AclWI	GGATC	1 cut(s)	518
AcsI	RAATTY	1 cut(s)	694
AcvI	CACGTG	1 cut(s)	457
AcyI	GRCGYC	4 cut(s)	198, 234, 255, 341
AfiI	CCNNNNNNNGG	1 cut(s)	343
AflIII	ACRYGT	1 cut(s)	454
AgsI	TTSAA	3 cut(s)	61, 625, 673
AhlI	ACTAGT	1 cut(s)	581
AjnI	CCWGG	1 cut(s)	336
AjuI	GAANNNNNNNTTGG	2 cut(s)	680, 712
AluBI	AGCT	3 cut(s)	193, 376, 569
AluI	AGCT	3 cut(s)	193, 376, 569
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	1 cut(s)	341
AlwI	GGATC	1 cut(s)	518
Ama87I	CYCGRG	1 cut(s)	377
AoxI	GGCC	1 cut(s)	334
ApeKI	GCWGC	3 cut(s)	190, 352, 415
ApoI	RAATTY	1 cut(s)	694
AspLEI	GCGC	3 cut(s)	200, 236, 343
AspS9I	GGNCC	1 cut(s)	147
AsuC2I	CCSGG	1 cut(s)	384
AsuHPI	GGTGA	9 cut(s)	46, 103, 148, 289, 319, 406, 529, 673, 703
AvaI	CYCGRG	1 cut(s)	377
AvaII	GGWCC	1 cut(s)	147
BaeI	ACNNNNGTAYC	2 cut(s)	527, 560
BanI	GGYRCC	7 cut(s)	197, 233, 287, 340, 464, 487, 550
BanII	GRGCYC	1 cut(s)	378
BbrPI	CACGTG	1 cut(s)	457
BbsI	GAAGAC	2 cut(s)	365, 527
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	3 cut(s)	202, 339, 402
BccI	CCATC	6 cut(s)	35, 123, 424, 478, 569, 767
BceAI	ACGGC	4 cut(s)	263, 268, 301, 478
BciT130I	CCWGG	1 cut(s)	338
BclI	TGATCA	1 cut(s)	610
BcnI	CCSGG	1 cut(s)	384
BcoDI	GTCTC	1 cut(s)	341
BcuI	ACTAGT	1 cut(s)	581
BfaI	CTAG	2 cut(s)	44, 582
BfoI	RGCGCY	3 cut(s)	201, 237, 344
BfuAI	ACCTGC	1 cut(s)	299
BglI	GCCNNNNNGGC	1 cut(s)	432
BisI	GCNGC	6 cut(s)	191, 211, 214, 237, 353, 416
BlsI	GCNGC	6 cut(s)	192, 212, 215, 238, 354, 417
Bme1390I	CCNGG	2 cut(s)	338, 384
Bme18I	GGWCC	1 cut(s)	147
BmeT110I	CYCGRG	1 cut(s)	377
BmgT120I	GGNCC	1 cut(s)	147
BmiI	GGNNCC	8 cut(s)	149, 199, 235, 289, 342, 466, 489, 552
BmrFI	CCNGG	2 cut(s)	338, 384
BmrI	ACTGGG	1 cut(s)	722
BmsI	GCATC	1 cut(s)	282
BmuI	ACTGGG	1 cut(s)	722
BpiI	GAAGAC	2 cut(s)	365, 527
BpmI	CTGGAG	1 cut(s)	422
BpuEI	CTTGAG	1 cut(s)	524
BpuMI	CCSGG	1 cut(s)	384
BsaAI	YACGTR	1 cut(s)	457
BsaHI	GRCGYC	4 cut(s)	198, 234, 255, 341
BsaJI	CCNNGG	1 cut(s)	262
BsaWI	WCCGGW	2 cut(s)	144, 158
BsaXI	ACNNNNNCTCC	6 cut(s)	14, 44, 53, 80, 83, 110
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse118I	RCCGGY	1 cut(s)	467
Bse1I	ACTGG	1 cut(s)	717
BseBI	CCWGG	1 cut(s)	338
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	3 cut(s)	435, 580, 604
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMII	CTCAG	2 cut(s)	662, 751
BseNI	ACTGG	1 cut(s)	717
BseRI	GAGGAG	3 cut(s)	22, 117, 509
BseXI	GCAGC	3 cut(s)	202, 339, 402
BshFI	GGCC	1 cut(s)	336
BshNI	GGYRCC	7 cut(s)	197, 233, 287, 340, 464, 487, 550
BsiHKAI	GWGCWC	1 cut(s)	378
BsiHKCI	CYCGRG	1 cut(s)	377
BsiSI	CCGG	7 cut(s)	145, 159, 344, 383, 427, 468, 491
BslFI	GGGAC	3 cut(s)	133, 465, 592
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	1 cut(s)	341
BsmBI	CGTCTC	1 cut(s)	341
BsmFI	GGGAC	3 cut(s)	133, 465, 592
BsnI	GGCC	1 cut(s)	336
BsoBI	CYCGRG	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp143I	GATC	3 cut(s)	122, 510, 610
BspANI	GGCC	1 cut(s)	336
BspCNI	CTCAG	2 cut(s)	661, 750
BspLI	GGNNCC	8 cut(s)	149, 199, 235, 289, 342, 466, 489, 552
BspMI	ACCTGC	1 cut(s)	299
BspPI	GGATC	1 cut(s)	518
BspT107I	GGYRCC	7 cut(s)	197, 233, 287, 340, 464, 487, 550
BsrBI	CCGCTC	1 cut(s)	406
BsrFI	RCCGGY	1 cut(s)	467
BsrI	ACTGG	1 cut(s)	717
BssAI	RCCGGY	1 cut(s)	467
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	3 cut(s)	122, 510, 610
BssNI	GRCGYC	4 cut(s)	198, 234, 255, 341
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	4 cut(s)	244, 301, 331, 592
Bst6I	CTCTTC	2 cut(s)	98, 158
BstACI	GRCGYC	4 cut(s)	198, 234, 255, 341
BstAPI	GCANNNNNTGC	1 cut(s)	445
BstBAI	YACGTR	1 cut(s)	457
BstC8I	GCNNGC	2 cut(s)	408, 437
BstDEI	CTNAG	2 cut(s)	648, 737
BstF5I	GGATG	3 cut(s)	435, 580, 604
BstH2I	RGCGCY	3 cut(s)	201, 237, 344
BstHHI	GCGC	3 cut(s)	200, 236, 343
BstKTI	GATC	3 cut(s)	125, 513, 613
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	3 cut(s)	122, 510, 610
BstMWI	GCNNNNNNNGC	6 cut(s)	349, 373, 388, 412, 432, 445
BstNI	CCWGG	1 cut(s)	338
BstSCI	CCNGG	2 cut(s)	336, 382
BstV1I	GCAGC	3 cut(s)	202, 339, 402
BstV2I	GAAGAC	2 cut(s)	365, 527
BsuRI	GGCC	1 cut(s)	336
BtgZI	GCGATG	1 cut(s)	259
BtsCI	GGATG	3 cut(s)	435, 580, 604
BveI	ACCTGC	1 cut(s)	299
Cac8I	GCNNGC	2 cut(s)	408, 437
CfoI	GCGC	3 cut(s)	200, 236, 343
Cfr10I	RCCGGY	1 cut(s)	467
Cfr13I	GGNCC	1 cut(s)	147
CseI	GACGC	2 cut(s)	244, 358
CviAII	CATG	2 cut(s)	223, 631
DdeI	CTNAG	2 cut(s)	648, 737
DinI	GGCGCC	3 cut(s)	199, 235, 342
DpnI	GATC	3 cut(s)	124, 512, 612
DpnII	GATC	3 cut(s)	122, 510, 610
Eam1104I	CTCTTC	2 cut(s)	98, 158
EarI	CTCTTC	2 cut(s)	98, 158
EciI	GGCGGA	1 cut(s)	248
Ecl136II	GAGCTC	1 cut(s)	376
Eco24I	GRGCYC	1 cut(s)	378
Eco47I	GGWCC	1 cut(s)	147
Eco53kI	GAGCTC	1 cut(s)	376
Eco72I	CACGTG	1 cut(s)	457
Eco88I	CYCGRG	1 cut(s)	377
EcoICRI	GAGCTC	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	336
EcoT38I	GRGCYC	1 cut(s)	378
EgeI	GGCGCC	3 cut(s)	199, 235, 342
EheI	GGCGCC	3 cut(s)	199, 235, 342
Esp3I	CGTCTC	1 cut(s)	341
FaeI	CATG	2 cut(s)	226, 634
FaiI	YATR	8 cut(s)	224, 546, 564, 566, 632, 645, 710, 723
FaqI	GGGAC	3 cut(s)	133, 465, 592
FatI	CATG	2 cut(s)	222, 630
FauI	CCCGC	3 cut(s)	140, 399, 428
FbaI	TGATCA	1 cut(s)	610
Fnu4HI	GCNGC	6 cut(s)	191, 211, 214, 237, 353, 416
FokI	GGATG	3 cut(s)	442, 587, 611
FriOI	GRGCYC	1 cut(s)	378
Fsp4HI	GCNGC	6 cut(s)	191, 211, 214, 237, 353, 416
FspBI	CTAG	2 cut(s)	44, 582
GlaI	GCGC	3 cut(s)	199, 235, 342
GluI	GCNGC	6 cut(s)	191, 211, 214, 237, 353, 416
GsuI	CTGGAG	1 cut(s)	422
HaeII	RGCGCY	3 cut(s)	201, 237, 344
HaeIII	GGCC	1 cut(s)	336
HapII	CCGG	7 cut(s)	145, 159, 344, 383, 427, 468, 491
HgaI	GACGC	2 cut(s)	244, 358
HhaI	GCGC	3 cut(s)	200, 236, 343
Hin1I	GRCGYC	4 cut(s)	198, 234, 255, 341
Hin1II	CATG	2 cut(s)	226, 634
Hin6I	GCGC	3 cut(s)	198, 234, 341
HinP1I	GCGC	3 cut(s)	198, 234, 341
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	8 cut(s)	51, 162, 228, 317, 397, 500, 664, 755
HpaII	CCGG	7 cut(s)	145, 159, 344, 383, 427, 468, 491
HphI	GGTGA	9 cut(s)	46, 103, 148, 289, 319, 406, 529, 673, 703
Hpy166II	GTNNAC	2 cut(s)	283, 460
Hpy188I	TCNGA	3 cut(s)	122, 205, 588
Hpy188III	TCNNGA	3 cut(s)	401, 614, 752
Hpy8I	GTNNAC	2 cut(s)	283, 460
Hpy99I	CGWCG	5 cut(s)	254, 317, 335, 424, 529
HpyAV	CCTTC	6 cut(s)	28, 67, 523, 649, 670, 682
HpyCH4III	ACNGT	4 cut(s)	244, 301, 331, 592
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	1 cut(s)	448
HpyF10VI	GCNNNNNNNGC	6 cut(s)	349, 373, 388, 412, 432, 445
HpyF3I	CTNAG	2 cut(s)	648, 737
HpySE526I	ACGT	1 cut(s)	456
Hsp92I	GRCGYC	4 cut(s)	198, 234, 255, 341
Hsp92II	CATG	2 cut(s)	226, 634
HspAI	GCGC	3 cut(s)	198, 234, 341
KasI	GGCGCC	3 cut(s)	197, 233, 340
Ksp22I	TGATCA	1 cut(s)	610
Kzo9I	GATC	3 cut(s)	122, 510, 610
LmnI	GCTCC	2 cut(s)	373, 403
Lsp1109I	GCAGC	3 cut(s)	202, 339, 402
LweI	GCATC	1 cut(s)	282
MaeI	CTAG	2 cut(s)	44, 582
MaeII	ACGT	1 cut(s)	456
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	3 cut(s)	124, 512, 612
MbiI	CCGCTC	1 cut(s)	406
MboI	GATC	3 cut(s)	122, 510, 610
MboII	GAAGA	5 cut(s)	85, 145, 370, 532, 685
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	2 cut(s)	625, 694
Mly113I	GGCGCC	3 cut(s)	198, 234, 341
MlyI	GAGTC	1 cut(s)	749
MmeI	TCCRAC	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	635
MspA1I	CMGCKG	1 cut(s)	210
MspI	CCGG	7 cut(s)	145, 159, 344, 383, 427, 468, 491
MspR9I	CCNGG	2 cut(s)	338, 384
MvaI	CCWGG	1 cut(s)	338
MwoI	GCNNNNNNNGC	6 cut(s)	349, 373, 388, 412, 432, 445
NarI	GGCGCC	3 cut(s)	198, 234, 341
NciI	CCSGG	1 cut(s)	384
NdeII	GATC	3 cut(s)	122, 510, 610
NlaIII	CATG	2 cut(s)	226, 634
NlaIV	GGNNCC	8 cut(s)	149, 199, 235, 289, 342, 466, 489, 552
NmeAIII	GCCGAG	2 cut(s)	174, 243
NmuCI	GTSAC	1 cut(s)	301
PaeR7I	CTCGAG	1 cut(s)	377
PaqCI	CACCTGC	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	2 cut(s)	201, 468
PfeI	GAWTC	7 cut(s)	51, 162, 228, 317, 397, 500, 664
PflFI	GACNNNGTC	1 cut(s)	254
PkrI	GCNGC	6 cut(s)	192, 212, 215, 238, 354, 417
PleI	GAGTC	1 cut(s)	749
PluTI	GGCGCC	3 cut(s)	201, 237, 344
PmaCI	CACGTG	1 cut(s)	457
PmlI	CACGTG	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	749
Ppu21I	YACGTR	1 cut(s)	457
Psp124BI	GAGCTC	1 cut(s)	378
Psp6I	CCWGG	1 cut(s)	336
PspCI	CACGTG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	336
PspN4I	GGNNCC	8 cut(s)	149, 199, 235, 289, 342, 466, 489, 552
PspPI	GGNCC	1 cut(s)	147
PspXI	VCTCGAGB	1 cut(s)	377
PsyI	GACNNNGTC	1 cut(s)	254
RseI	CAYNNNNRTG	1 cut(s)	635
SacI	GAGCTC	1 cut(s)	378
SatI	GCNGC	6 cut(s)	191, 211, 214, 237, 353, 416
Sau3AI	GATC	3 cut(s)	122, 510, 610
Sau96I	GGNCC	1 cut(s)	147
SchI	GAGTC	1 cut(s)	749
ScrFI	CCNGG	2 cut(s)	338, 384
SduI	GDGCHC	1 cut(s)	378
SfaNI	GCATC	1 cut(s)	282
SfoI	GGCGCC	3 cut(s)	199, 235, 342
Sfr274I	CTCGAG	1 cut(s)	377
SgrAI	CRCCGGYG	1 cut(s)	467
SinI	GGWCC	1 cut(s)	147
SlaI	CTCGAG	1 cut(s)	377
SmiMI	CAYNNNNRTG	1 cut(s)	635
SmlI	CTYRAG	2 cut(s)	377, 539
SmoI	CTYRAG	2 cut(s)	377, 539
SpeI	ACTAGT	1 cut(s)	581
Sse9I	AATT	2 cut(s)	625, 694
SspDI	GGCGCC	3 cut(s)	197, 233, 340
SspMI	CTAG	2 cut(s)	44, 582
SstI	GAGCTC	1 cut(s)	378
StyD4I	CCNGG	2 cut(s)	336, 382
TaaI	ACNGT	4 cut(s)	244, 301, 331, 592
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	6 cut(s)	219, 249, 312, 378, 482, 767
TasI	AATT	2 cut(s)	625, 694
TauI	GCSGC	3 cut(s)	213, 216, 239
TfiI	GAWTC	7 cut(s)	51, 162, 228, 317, 397, 500, 664
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	3 cut(s)	190, 352, 415
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	1 cut(s)	619
TspGWI	ACGGA	1 cut(s)	320
Tth111I	GACNNNGTC	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	147
XapI	RAATTY	1 cut(s)	694
XhoI	CTCGAG	1 cut(s)	377
XspI	CTAG	2 cut(s)	44, 582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.