Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000616.1

Orthogroup ID

OG0009091

Physical Location & Seq

Genomic Coordinates Forward (+)

57757 .. 58530

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000616.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atggcaaccctaaacaccttctacaccatctcctccaaaaccctagccagattcaccttcaaccccctctccaaaccgtccgctctaagcctcttcgccaaaccgcccctcacgcatctccgatctcctccccgcaacacaatccggtgcctcttcaccggaatcgtcgaggaaatgggccacgtcaagcagctcggtgcctccgacagcggcggcttcgacatgagaatcggcgccgccaccgtcctcgacggcgtccacctcggcgacagcatcgccgtcaacggcacctgcctcaccgtcacggagttcgacgcgtctcatttcaccgtcggcctggcgccggagacgctgcggaagacctcgctggtggagctcgagccgggttcgctggtgaatctggagcgggcggtgctgccgacgagccggatgggcgggcatttcttgcagggacacgtggacggcaccggcgagatagtgtcgatggtgccggaggaggattcgctgtggatcaaggtgaagacgacgaaggagatactcaagtatgtggtgccgaaagggtatatagctgtggatgggactagtctgactgtggtggatgtgtttgatgatgaagagtgcttcaatttcatgctggtggcttatactcagcagaaggtggtgattcctttgaagaaggttgggcagaaggtgaatttggaggttgatatactggggaaatatgtggagaggcttctcagtagtgggtttgttgactcgatcaagtcgaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004746 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009987 GO:0016740 GO:0016765 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Lum_binding

Protein Analysis

257

Amino Acids

27.98

Weight (kDa)

6.31

Isoelectric Point (pI)

32.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20690
fragaria_vesca	FvH4_5g33380 FvH4_5g33380 FvH4_5g33380 FvH4_5g33380
malus_domestica	MD09G1247800.v1.1 MD17G1240700.v1.1
prunus_persica	Prupe.3G137500_v2.0.a1 Prupe.3G137500_v2.0.a1 Prupe.3G137500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0232111
rosa_laevigata	RLG00000001390
rosa_multiflora	Rmu_co8217730.1_g000001 Rmu_sc0000616.1_g000009 Rmu_sc0004618.1_g000003
rosa_roxburghii	Rroxscaffold_3G00228800
rosa_rugosa	Rorug07G0269300
rosa_samantha	Rh7AG423700 Rh7BG397800 Rh7CG444200 Rh7DG415900
rosa_wichuraiana	Rw7G035050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	299
Acc36I	ACCTGC	1 cut(s)	299
AccB1I	GGYRCC	8 cut(s)	147, 197, 233, 287, 340, 464, 487, 550
AccBSI	CCGCTC	2 cut(s)	83, 406
AccII	CGCG	1 cut(s)	317
AclWI	GGATC	1 cut(s)	518
AcsI	RAATTY	1 cut(s)	694
AcvI	CACGTG	1 cut(s)	457
AcyI	GRCGYC	3 cut(s)	234, 255, 341
AfiI	CCNNNNNNNGG	1 cut(s)	343
AflIII	ACRYGT	2 cut(s)	315, 454
AgsI	TTSAA	3 cut(s)	61, 625, 673
AhlI	ACTAGT	1 cut(s)	581
AjiI	CACGTC	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	336
AjuI	GAANNNNNNNTTGG	2 cut(s)	680, 712
AluBI	AGCT	3 cut(s)	193, 376, 569
AluI	AGCT	3 cut(s)	193, 376, 569
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	2 cut(s)	324, 341
AlwI	GGATC	1 cut(s)	518
Ama87I	CYCGRG	1 cut(s)	377
AoxI	GGCC	2 cut(s)	178, 334
ApeKI	GCWGC	3 cut(s)	190, 352, 415
ApoI	RAATTY	1 cut(s)	694
AspLEI	GCGC	2 cut(s)	236, 343
AspS9I	GGNCC	1 cut(s)	178
AsuC2I	CCSGG	1 cut(s)	384
AsuHPI	GGTGA	8 cut(s)	46, 148, 289, 319, 406, 529, 673, 703
AvaI	CYCGRG	1 cut(s)	377
BaeI	ACNNNNGTAYC	2 cut(s)	527, 560
BanI	GGYRCC	8 cut(s)	147, 197, 233, 287, 340, 464, 487, 550
BanII	GRGCYC	1 cut(s)	378
BbrPI	CACGTG	1 cut(s)	457
BbsI	GAAGAC	2 cut(s)	365, 527
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	3 cut(s)	202, 339, 402
BccI	CCATC	4 cut(s)	35, 424, 478, 569
BceAI	ACGGC	4 cut(s)	263, 268, 301, 478
BciT130I	CCWGG	1 cut(s)	338
BcnI	CCSGG	1 cut(s)	384
BcoDI	GTCTC	2 cut(s)	324, 341
BcuI	ACTAGT	1 cut(s)	581
BfaI	CTAG	2 cut(s)	44, 582
BfoI	RGCGCY	2 cut(s)	237, 344
BfuAI	ACCTGC	1 cut(s)	299
BglI	GCCNNNNNGGC	1 cut(s)	432
BisI	GCNGC	6 cut(s)	191, 211, 214, 237, 353, 416
BlsI	GCNGC	6 cut(s)	192, 212, 215, 238, 354, 417
Bme1390I	CCNGG	2 cut(s)	338, 384
BmeT110I	CYCGRG	1 cut(s)	377
BmgBI	CACGTC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	8 cut(s)	149, 199, 235, 289, 342, 466, 489, 552
BmrFI	CCNGG	2 cut(s)	338, 384
BmrI	ACTGGG	1 cut(s)	722
BmsI	GCATC	2 cut(s)	124, 282
BmuI	ACTGGG	1 cut(s)	722
BpiI	GAAGAC	2 cut(s)	365, 527
BpmI	CTGGAG	1 cut(s)	422
BpuEI	CTTGAG	1 cut(s)	524
BpuMI	CCSGG	1 cut(s)	384
BsaAI	YACGTR	1 cut(s)	457
BsaHI	GRCGYC	3 cut(s)	234, 255, 341
BsaJI	CCNNGG	1 cut(s)	262
BsaWI	WCCGGW	2 cut(s)	144, 158
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 53, 83
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse118I	RCCGGY	1 cut(s)	467
Bse1I	ACTGG	1 cut(s)	717
BseBI	CCWGG	1 cut(s)	338
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	3 cut(s)	435, 580, 604
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMII	CTCAG	2 cut(s)	662, 751
BseNI	ACTGG	1 cut(s)	717
BseRI	GAGGAG	3 cut(s)	22, 117, 509
BseXI	GCAGC	3 cut(s)	202, 339, 402
Bsh1236I	CGCG	1 cut(s)	317
BshFI	GGCC	2 cut(s)	180, 336
BshNI	GGYRCC	8 cut(s)	147, 197, 233, 287, 340, 464, 487, 550
BsiHKAI	GWGCWC	1 cut(s)	378
BsiHKCI	CYCGRG	1 cut(s)	377
BsiSI	CCGG	7 cut(s)	145, 159, 344, 383, 427, 468, 491
BslFI	GGGAC	2 cut(s)	465, 592
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	2 cut(s)	324, 341
BsmBI	CGTCTC	2 cut(s)	324, 341
BsmFI	GGGAC	2 cut(s)	465, 592
BsnI	GGCC	2 cut(s)	180, 336
BsoBI	CYCGRG	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp143I	GATC	3 cut(s)	122, 510, 759
BspANI	GGCC	2 cut(s)	180, 336
BspCNI	CTCAG	2 cut(s)	661, 750
BspFNI	CGCG	1 cut(s)	317
BspLI	GGNNCC	8 cut(s)	149, 199, 235, 289, 342, 466, 489, 552
BspMI	ACCTGC	1 cut(s)	299
BspPI	GGATC	1 cut(s)	518
BspT107I	GGYRCC	8 cut(s)	147, 197, 233, 287, 340, 464, 487, 550
BsrBI	CCGCTC	2 cut(s)	83, 406
BsrFI	RCCGGY	1 cut(s)	467
BsrI	ACTGG	1 cut(s)	717
BssAI	RCCGGY	1 cut(s)	467
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	3 cut(s)	122, 510, 759
BssNI	GRCGYC	3 cut(s)	234, 255, 341
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	5 cut(s)	78, 244, 301, 331, 592
Bst6I	CTCTTC	3 cut(s)	98, 158, 609
BstACI	GRCGYC	3 cut(s)	234, 255, 341
BstAPI	GCANNNNNTGC	1 cut(s)	445
BstBAI	YACGTR	1 cut(s)	457
BstC8I	GCNNGC	2 cut(s)	408, 437
BstDEI	CTNAG	3 cut(s)	86, 648, 737
BstF5I	GGATG	3 cut(s)	435, 580, 604
BstFNI	CGCG	1 cut(s)	317
BstH2I	RGCGCY	2 cut(s)	237, 344
BstHHI	GCGC	2 cut(s)	236, 343
BstKTI	GATC	3 cut(s)	125, 513, 762
BstMAI	GTCTC	2 cut(s)	324, 341
BstMBI	GATC	3 cut(s)	122, 510, 759
BstMWI	GCNNNNNNNGC	7 cut(s)	112, 349, 373, 388, 412, 432, 445
BstNI	CCWGG	1 cut(s)	338
BstSCI	CCNGG	2 cut(s)	336, 382
BstUI	CGCG	1 cut(s)	317
BstV1I	GCAGC	3 cut(s)	202, 339, 402
BstV2I	GAAGAC	2 cut(s)	365, 527
BsuRI	GGCC	2 cut(s)	180, 336
BtgZI	GCGATG	1 cut(s)	259
BtrI	CACGTC	1 cut(s)	184
BtsCI	GGATG	3 cut(s)	435, 580, 604
BveI	ACCTGC	1 cut(s)	299
Cac8I	GCNNGC	2 cut(s)	408, 437
CfoI	GCGC	2 cut(s)	236, 343
Cfr10I	RCCGGY	1 cut(s)	467
Cfr13I	GGNCC	1 cut(s)	178
CseI	GACGC	4 cut(s)	244, 306, 323, 358
CviAII	CATG	2 cut(s)	223, 631
DdeI	CTNAG	3 cut(s)	86, 648, 737
DinI	GGCGCC	2 cut(s)	235, 342
DpnI	GATC	3 cut(s)	124, 512, 761
DpnII	GATC	3 cut(s)	122, 510, 759
Eam1104I	CTCTTC	3 cut(s)	98, 158, 609
EarI	CTCTTC	3 cut(s)	98, 158, 609
Ecl136II	GAGCTC	1 cut(s)	376
Eco24I	GRGCYC	1 cut(s)	378
Eco53kI	GAGCTC	1 cut(s)	376
Eco72I	CACGTG	1 cut(s)	457
Eco88I	CYCGRG	1 cut(s)	377
EcoICRI	GAGCTC	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	336
EcoT38I	GRGCYC	1 cut(s)	378
EgeI	GGCGCC	2 cut(s)	235, 342
EheI	GGCGCC	2 cut(s)	235, 342
Esp3I	CGTCTC	2 cut(s)	324, 341
FaeI	CATG	2 cut(s)	226, 634
FaiI	YATR	8 cut(s)	224, 546, 564, 566, 632, 645, 710, 723
FaqI	GGGAC	2 cut(s)	465, 592
FatI	CATG	2 cut(s)	222, 630
FauI	CCCGC	3 cut(s)	140, 399, 428
Fnu4HI	GCNGC	6 cut(s)	191, 211, 214, 237, 353, 416
FokI	GGATG	3 cut(s)	442, 587, 611
FriOI	GRGCYC	1 cut(s)	378
Fsp4HI	GCNGC	6 cut(s)	191, 211, 214, 237, 353, 416
FspBI	CTAG	2 cut(s)	44, 582
GlaI	GCGC	2 cut(s)	235, 342
GluI	GCNGC	6 cut(s)	191, 211, 214, 237, 353, 416
GsuI	CTGGAG	1 cut(s)	422
HaeII	RGCGCY	2 cut(s)	237, 344
HaeIII	GGCC	2 cut(s)	180, 336
HapII	CCGG	7 cut(s)	145, 159, 344, 383, 427, 468, 491
HgaI	GACGC	4 cut(s)	244, 306, 323, 358
HhaI	GCGC	2 cut(s)	236, 343
Hin1I	GRCGYC	3 cut(s)	234, 255, 341
Hin1II	CATG	2 cut(s)	226, 634
Hin6I	GCGC	2 cut(s)	234, 341
HinP1I	GCGC	2 cut(s)	234, 341
HincII	GTYRAC	2 cut(s)	283, 754
HindII	GTYRAC	2 cut(s)	283, 754
HinfI	GANTC	7 cut(s)	51, 162, 228, 397, 500, 664, 755
HpaII	CCGG	7 cut(s)	145, 159, 344, 383, 427, 468, 491
HphI	GGTGA	8 cut(s)	46, 148, 289, 319, 406, 529, 673, 703
Hpy166II	GTNNAC	4 cut(s)	259, 283, 460, 754
Hpy188I	TCNGA	3 cut(s)	122, 205, 588
Hpy188III	TCNNGA	1 cut(s)	401
Hpy8I	GTNNAC	4 cut(s)	259, 283, 460, 754
Hpy99I	CGWCG	6 cut(s)	170, 254, 317, 335, 424, 529
HpyAV	CCTTC	6 cut(s)	28, 67, 523, 649, 670, 682
HpyCH4III	ACNGT	5 cut(s)	78, 244, 301, 331, 592
HpyCH4IV	ACGT	2 cut(s)	183, 456
HpyCH4V	TGCA	1 cut(s)	448
HpyF10VI	GCNNNNNNNGC	7 cut(s)	112, 349, 373, 388, 412, 432, 445
HpyF3I	CTNAG	3 cut(s)	86, 648, 737
HpySE526I	ACGT	2 cut(s)	183, 456
Hsp92I	GRCGYC	3 cut(s)	234, 255, 341
Hsp92II	CATG	2 cut(s)	226, 634
HspAI	GCGC	2 cut(s)	234, 341
KasI	GGCGCC	2 cut(s)	233, 340
Kzo9I	GATC	3 cut(s)	122, 510, 759
LmnI	GCTCC	2 cut(s)	373, 403
Lsp1109I	GCAGC	3 cut(s)	202, 339, 402
LweI	GCATC	2 cut(s)	124, 282
MaeI	CTAG	2 cut(s)	44, 582
MaeII	ACGT	2 cut(s)	183, 456
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	3 cut(s)	124, 512, 761
MbiI	CCGCTC	2 cut(s)	83, 406
MboI	GATC	3 cut(s)	122, 510, 759
MboII	GAAGA	6 cut(s)	85, 145, 370, 532, 626, 685
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	2 cut(s)	625, 694
MluI	ACGCGT	1 cut(s)	315
Mly113I	GGCGCC	2 cut(s)	234, 341
MlyI	GAGTC	1 cut(s)	749
MmeI	TCCRAC	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	635
MspA1I	CMGCKG	1 cut(s)	210
MspI	CCGG	7 cut(s)	145, 159, 344, 383, 427, 468, 491
MspR9I	CCNGG	2 cut(s)	338, 384
MvaI	CCWGG	1 cut(s)	338
MvnI	CGCG	1 cut(s)	317
MwoI	GCNNNNNNNGC	7 cut(s)	112, 349, 373, 388, 412, 432, 445
NarI	GGCGCC	2 cut(s)	234, 341
NciI	CCSGG	1 cut(s)	384
NdeII	GATC	3 cut(s)	122, 510, 759
NlaIII	CATG	2 cut(s)	226, 634
NlaIV	GGNNCC	8 cut(s)	149, 199, 235, 289, 342, 466, 489, 552
NmeAIII	GCCGAG	1 cut(s)	243
NmuCI	GTSAC	1 cut(s)	301
PaeR7I	CTCGAG	1 cut(s)	377
PaqCI	CACCTGC	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	3 cut(s)	201, 468, 764
PfeI	GAWTC	6 cut(s)	51, 162, 228, 397, 500, 664
PflFI	GACNNNGTC	1 cut(s)	254
PkrI	GCNGC	6 cut(s)	192, 212, 215, 238, 354, 417
PleI	GAGTC	1 cut(s)	749
PluTI	GGCGCC	2 cut(s)	237, 344
PmaCI	CACGTG	1 cut(s)	457
PmlI	CACGTG	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	749
Ppu21I	YACGTR	1 cut(s)	457
Psp124BI	GAGCTC	1 cut(s)	378
Psp6I	CCWGG	1 cut(s)	336
PspCI	CACGTG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	336
PspN4I	GGNNCC	8 cut(s)	149, 199, 235, 289, 342, 466, 489, 552
PspPI	GGNCC	1 cut(s)	178
PspXI	VCTCGAGB	1 cut(s)	377
PsyI	GACNNNGTC	1 cut(s)	254
RseI	CAYNNNNRTG	1 cut(s)	635
SacI	GAGCTC	1 cut(s)	378
SatI	GCNGC	6 cut(s)	191, 211, 214, 237, 353, 416
Sau3AI	GATC	3 cut(s)	122, 510, 759
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	1 cut(s)	749
ScrFI	CCNGG	2 cut(s)	338, 384
SduI	GDGCHC	1 cut(s)	378
SfaNI	GCATC	2 cut(s)	124, 282
SfoI	GGCGCC	2 cut(s)	235, 342
Sfr274I	CTCGAG	1 cut(s)	377
SgrAI	CRCCGGYG	1 cut(s)	467
SlaI	CTCGAG	1 cut(s)	377
SmiMI	CAYNNNNRTG	1 cut(s)	635
SmlI	CTYRAG	2 cut(s)	377, 539
SmoI	CTYRAG	2 cut(s)	377, 539
SpeI	ACTAGT	1 cut(s)	581
Sse9I	AATT	2 cut(s)	625, 694
SspDI	GGCGCC	2 cut(s)	233, 340
SspMI	CTAG	2 cut(s)	44, 582
SstI	GAGCTC	1 cut(s)	378
StyD4I	CCNGG	2 cut(s)	336, 382
TaaI	ACNGT	5 cut(s)	78, 244, 301, 331, 592
TaiI	ACGT	2 cut(s)	186, 459
TaqI	TCGA	8 cut(s)	168, 219, 249, 312, 378, 482, 758, 767
TasI	AATT	2 cut(s)	625, 694
TauI	GCSGC	3 cut(s)	213, 216, 239
TfiI	GAWTC	6 cut(s)	51, 162, 228, 397, 500, 664
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	3 cut(s)	190, 352, 415
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	2 cut(s)	619, 627
TspGWI	ACGGA	1 cut(s)	320
Tth111I	GACNNNGTC	1 cut(s)	254
XapI	RAATTY	1 cut(s)	694
XhoI	CTCGAG	1 cut(s)	377
XspI	CTAG	2 cut(s)	44, 582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.