Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009091

Physical Location & Seq

Genomic Coordinates Reverse (-)

14511419 .. 14514379

Gene Structure 2961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G137500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCAGCAGTTTCAGCGTCTCTCAGCTTACCCTCAAGAACCCCTGAACCCTCTGTTCGGAAAATGTCAATCCTGAATAAGTTCCACAGTGTCGCTTCCAGAACCCACTGCAATTTCGACGCCATTTTCAAACCATCCACCCTAACCCTCTTCATCTCCACCCAAAGACCCCATGCACATATCAAATCTCCACCTCGAAACACAATCCGATGCCTGTTCACTGGAATTGTCGAGGAAATGGGTCAAATCAAGCAACTGGGTACCGCTGAAAACGGCGGTTTCGACATGAAAATCGGCGCCAAAACCGTCCTCGAGGGCGTCCACCTCGGCGATAGCATTGCCGTCAACGGGACGTGCCTCACGGTGACTGAATTCGACACCCAATTGTCCGATTTCACCGTCGGTTTGTCGCCCGAGACGCTTAGGAAGACGTCTCTGATCGAGCTCGAACCGGGGTCACTTGTGAATCTGGAGCGGGCGGTCCAGCCCACGAGCCGAATGGGTGGGCACTTTGTGCAGGGTCATGTGGATGGCACAGGGGAGATAGTGTCAATGGATCCTGAGGGGGATTCTCTATGGATCAAGGTGAAGGCATCAAAGGAGCTGTTGAAGTATGTGGTGCCGAAAGGGTTTATAGCAGTGGATGGGACTAGTTTGACTGTGGTGGATGTGTTTGATAAAGAAGACAGCTTTAATTTCATGTTGGTGGCTTATACTCAGCAGAACGTGGTGATTCCCTTGAAGAAGGTTGGGCAAAAGGTGAATTTGGAAGTTGATATACTCGGCAAGTATGTGGAGAGGCTCCTCAGCAGTGGATTTGTTGAGTCAATCAAATCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004746 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009987 GO:0016740 GO:0016765 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Lum_binding

Protein Analysis

281

Amino Acids

30.47

Weight (kDa)

6.66

Isoelectric Point (pI)

30.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20690
fragaria_vesca	FvH4_5g33380 FvH4_5g33380 FvH4_5g33380 FvH4_5g33380
malus_domestica	MD09G1247800.v1.1 MD17G1240700.v1.1
prunus_persica	Prupe.3G137500_v2.0.a1 Prupe.3G137500_v2.0.a1 Prupe.3G137500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0232111
rosa_laevigata	RLG00000001390
rosa_multiflora	Rmu_co8217730.1_g000001 Rmu_sc0000616.1_g000009 Rmu_sc0004618.1_g000003
rosa_roxburghii	Rroxscaffold_3G00228800
rosa_rugosa	Rorug07G0269300
rosa_samantha	Rh7AG423700 Rh7BG397800 Rh7CG444200 Rh7DG415900
rosa_wichuraiana	Rw7G035050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	434
AbsI	CCTCGAGG	1 cut(s)	311
Acc65I	GGTACC	1 cut(s)	260
AccB1I	GGYRCC	3 cut(s)	260, 296, 619
AccBSI	CCGCTC	1 cut(s)	475
AciI	CCGC	4 cut(s)	264, 276, 475, 479
AclWI	GGATC	3 cut(s)	551, 564, 587
AcsI	RAATTY	2 cut(s)	371, 763
AcyI	GRCGYC	4 cut(s)	120, 297, 318, 431
AdeI	CACNNNGTG	1 cut(s)	514
AfaI	GTAC	1 cut(s)	262
AfiI	CCNNNNNNNGG	2 cut(s)	57, 348
AgsI	TTSAA	3 cut(s)	130, 610, 742
AhlI	ACTAGT	1 cut(s)	650
AjiI	CACGTC	1 cut(s)	354
AluBI	AGCT	4 cut(s)	27, 445, 604, 690
AluI	AGCT	4 cut(s)	27, 445, 604, 690
Alw21I	GWGCWC	1 cut(s)	447
Alw26I	GTCTC	3 cut(s)	24, 410, 438
AlwI	GGATC	3 cut(s)	551, 564, 587
Ama87I	CYCGRG	2 cut(s)	311, 413
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	2 cut(s)	371, 763
Asp700I	GAANNNNTTC	1 cut(s)	80
Asp718I	GGTACC	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	1 cut(s)	481
AsuC2I	CCSGG	1 cut(s)	453
AsuHPI	GGTGA	5 cut(s)	376, 388, 598, 742, 772
AvaI	CYCGRG	2 cut(s)	311, 413
AvaII	GGWCC	1 cut(s)	481
AxyI	CCTNAGG	1 cut(s)	561
BaeGI	GKGCMC	1 cut(s)	510
BamHI	GGATCC	1 cut(s)	556
BanI	GGYRCC	3 cut(s)	260, 296, 619
BanII	GRGCYC	1 cut(s)	447
BarI	GAAGNNNNNNTAC	2 cut(s)	762, 794
BauI	CACGAG	1 cut(s)	490
BbsI	GAAGAC	2 cut(s)	434, 690
Bbv12I	GWGCWC	1 cut(s)	447
BbvCI	CCTCAGC	1 cut(s)	806
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	3 cut(s)	142, 524, 638
BceAI	ACGGC	2 cut(s)	289, 326
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BcnI	CCSGG	1 cut(s)	453
BcoDI	GTCTC	3 cut(s)	24, 410, 438
BcuI	ACTAGT	1 cut(s)	650
BfaI	CTAG	1 cut(s)	651
BfoI	RGCGCY	1 cut(s)	300
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	453
Bme18I	GGWCC	1 cut(s)	481
BmeT110I	CYCGRG	2 cut(s)	311, 413
BmgBI	CACGTC	1 cut(s)	354
BmgT120I	GGNCC	1 cut(s)	481
BmiI	GGNNCC	5 cut(s)	262, 298, 558, 621, 803
BmrFI	CCNGG	1 cut(s)	453
BmrI	ACTGGG	1 cut(s)	266
BmsI	GCATC	2 cut(s)	200, 602
BmuI	ACTGGG	1 cut(s)	266
BpiI	GAAGAC	2 cut(s)	434, 690
BpmI	CTGGAG	1 cut(s)	491
Bpu10I	CCTNAGC	2 cut(s)	422, 806
BpuEI	CTTGAG	1 cut(s)	19
BpuMI	CCSGG	1 cut(s)	453
BsaHI	GRCGYC	4 cut(s)	120, 297, 318, 431
BsaJI	CCNNGG	2 cut(s)	325, 452
BsaXI	ACNNNNNCTCC	2 cut(s)	533, 563
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 348
Bse1I	ACTGG	2 cut(s)	226, 261
Bse21I	CCTNAGG	1 cut(s)	561
Bse3DI	GCAATG	1 cut(s)	336
BseDI	CCNNGG	2 cut(s)	325, 452
BseGI	GGATG	4 cut(s)	134, 535, 649, 673
BseLI	CCNNNNNNNGG	2 cut(s)	57, 348
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	4 cut(s)	37, 552, 731, 820
BseNI	ACTGG	2 cut(s)	226, 261
BseRI	GAGGAG	1 cut(s)	794
BseSI	GKGCMC	1 cut(s)	510
BseXI	GCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	536
BshNI	GGYRCC	3 cut(s)	260, 296, 619
BsiHKAI	GWGCWC	1 cut(s)	447
BsiHKCI	CYCGRG	2 cut(s)	311, 413
BsiSI	CCGG	1 cut(s)	452
BslFI	GGGAC	2 cut(s)	364, 661
BslI	CCNNNNNNNGG	2 cut(s)	57, 348
BsmAI	GTCTC	3 cut(s)	24, 410, 438
BsmBI	CGTCTC	3 cut(s)	24, 410, 438
BsmFI	GGGAC	2 cut(s)	364, 661
BsoBI	CYCGRG	2 cut(s)	311, 413
Bsp1286I	GDGCHC	2 cut(s)	447, 510
Bsp143I	GATC	3 cut(s)	438, 556, 579
BspACI	CCGC	4 cut(s)	264, 276, 475, 479
BspCNI	CTCAG	4 cut(s)	36, 553, 730, 819
BspHI	TCATGA	1 cut(s)	839
BspLI	GGNNCC	5 cut(s)	262, 298, 558, 621, 803
BspPI	GGATC	3 cut(s)	551, 564, 587
BspT107I	GGYRCC	3 cut(s)	260, 296, 619
BsrBI	CCGCTC	1 cut(s)	475
BsrDI	GCAATG	1 cut(s)	336
BsrI	ACTGG	2 cut(s)	226, 261
BssECI	CCNNGG	2 cut(s)	325, 452
BssMI	GATC	3 cut(s)	438, 556, 579
BssNI	GRCGYC	4 cut(s)	120, 297, 318, 431
BssSI	CACGAG	1 cut(s)	490
Bst2BI	CACGAG	1 cut(s)	490
Bst4CI	ACNGT	5 cut(s)	89, 307, 364, 400, 661
Bst6I	CTCTTC	1 cut(s)	155
BstACI	GRCGYC	4 cut(s)	120, 297, 318, 431
BstAPI	GCANNNNNTGC	1 cut(s)	514
BstC8I	GCNNGC	1 cut(s)	477
BstDEI	CTNAG	5 cut(s)	23, 422, 561, 717, 806
BstF5I	GGATG	4 cut(s)	134, 535, 649, 673
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	3 cut(s)	441, 559, 582
BstMAI	GTCTC	3 cut(s)	24, 410, 438
BstMBI	GATC	3 cut(s)	438, 556, 579
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 418, 514
BstSCI	CCNGG	1 cut(s)	451
BstSLI	GKGCMC	1 cut(s)	510
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	2 cut(s)	434, 690
BstX2I	RGATCY	1 cut(s)	556
BstYI	RGATCY	1 cut(s)	556
Bsu36I	CCTNAGG	1 cut(s)	561
BtrI	CACGTC	1 cut(s)	354
BtsCI	GGATG	4 cut(s)	134, 535, 649, 673
BtsI	GCAGTG	3 cut(s)	106, 645, 817
BtsIMutI	CAGTG	5 cut(s)	94, 106, 219, 645, 817
Cac8I	GCNNGC	1 cut(s)	477
CciI	TCATGA	1 cut(s)	839
CfoI	GCGC	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	481
CseI	GACGC	4 cut(s)	6, 128, 307, 427
Csp6I	GTAC	1 cut(s)	261
CviAII	CATG	5 cut(s)	173, 286, 524, 700, 840
CviJI	RGCY	8 cut(s)	27, 445, 487, 495, 604, 690, 710, 802
CviKI_1	RGCY	8 cut(s)	27, 445, 487, 495, 604, 690, 710, 802
CviQI	GTAC	1 cut(s)	261
DdeI	CTNAG	5 cut(s)	23, 422, 561, 717, 806
DinI	GGCGCC	1 cut(s)	298
DpnI	GATC	3 cut(s)	440, 558, 581
DpnII	GATC	3 cut(s)	438, 556, 579
DraIII	CACNNNGTG	1 cut(s)	514
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Ecl136II	GAGCTC	1 cut(s)	445
Eco24I	GRGCYC	1 cut(s)	447
Eco47I	GGWCC	1 cut(s)	481
Eco53kI	GAGCTC	1 cut(s)	445
Eco81I	CCTNAGG	1 cut(s)	561
Eco88I	CYCGRG	2 cut(s)	311, 413
EcoICRI	GAGCTC	1 cut(s)	445
EcoRI	GAATTC	1 cut(s)	371
EcoT38I	GRGCYC	1 cut(s)	447
EgeI	GGCGCC	1 cut(s)	298
EheI	GGCGCC	1 cut(s)	298
Esp3I	CGTCTC	3 cut(s)	24, 410, 438
FaeI	CATG	5 cut(s)	176, 289, 527, 703, 843
FaqI	GGGAC	2 cut(s)	364, 661
FatI	CATG	5 cut(s)	172, 285, 523, 699, 839
FauI	CCCGC	1 cut(s)	468
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	4 cut(s)	121, 542, 656, 680
FriOI	GRGCYC	1 cut(s)	447
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	651
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	491
HaeII	RGCGCY	1 cut(s)	300
HapII	CCGG	1 cut(s)	452
HgaI	GACGC	4 cut(s)	6, 128, 307, 427
HhaI	GCGC	1 cut(s)	299
Hin1I	GRCGYC	4 cut(s)	120, 297, 318, 431
Hin1II	CATG	5 cut(s)	176, 289, 527, 703, 843
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	4 cut(s)	466, 569, 733, 824
HpaII	CCGG	1 cut(s)	452
HphI	GGTGA	5 cut(s)	376, 388, 598, 742, 772
Hpy166II	GTNNAC	3 cut(s)	219, 322, 346
Hpy188I	TCNGA	4 cut(s)	60, 209, 391, 438
Hpy188III	TCNNGA	6 cut(s)	36, 73, 99, 470, 560, 840
Hpy8I	GTNNAC	3 cut(s)	219, 322, 346
Hpy99I	CGWCG	2 cut(s)	122, 404
HpyAV	CCTTC	2 cut(s)	583, 739
HpyCH4III	ACNGT	5 cut(s)	89, 307, 364, 400, 661
HpyCH4IV	ACGT	3 cut(s)	353, 431, 726
HpyCH4V	TGCA	3 cut(s)	111, 176, 517
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 418, 514
HpyF3I	CTNAG	5 cut(s)	23, 422, 561, 717, 806
HpySE526I	ACGT	3 cut(s)	353, 431, 726
Hsp92I	GRCGYC	4 cut(s)	120, 297, 318, 431
Hsp92II	CATG	5 cut(s)	176, 289, 527, 703, 843
HspAI	GCGC	1 cut(s)	297
KasI	GGCGCC	1 cut(s)	296
KpnI	GGTACC	1 cut(s)	264
Kzo9I	GATC	3 cut(s)	438, 556, 579
LmnI	GCTCC	3 cut(s)	472, 601, 807
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	2 cut(s)	200, 602
MaeI	CTAG	1 cut(s)	651
MaeII	ACGT	3 cut(s)	353, 431, 726
MaeIII	GTNAC	2 cut(s)	364, 456
MalI	GATC	3 cut(s)	440, 558, 581
MbiI	CCGCTC	1 cut(s)	475
MboI	GATC	3 cut(s)	438, 556, 579
MboII	GAAGA	5 cut(s)	142, 439, 695, 754, 828
MfeI	CAATTG	1 cut(s)	383
MflI	RGATCY	1 cut(s)	556
MhlI	GDGCHC	2 cut(s)	447, 510
MluCI	AATT	6 cut(s)	112, 225, 371, 383, 694, 763
Mly113I	GGCGCC	1 cut(s)	297
MlyI	GAGTC	1 cut(s)	833
MroXI	GAANNNNTTC	1 cut(s)	80
MseI	TTAA	1 cut(s)	693
MslI	CAYNNNNRTG	2 cut(s)	528, 704
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	1 cut(s)	452
MspR9I	CCNGG	1 cut(s)	453
MunI	CAATTG	1 cut(s)	383
MwoI	GCNNNNNNNGC	3 cut(s)	14, 418, 514
NarI	GGCGCC	1 cut(s)	297
NciI	CCSGG	1 cut(s)	453
NdeII	GATC	3 cut(s)	438, 556, 579
NlaIII	CATG	5 cut(s)	176, 289, 527, 703, 843
NlaIV	GGNNCC	5 cut(s)	262, 298, 558, 621, 803
NmeAIII	GCCGAG	2 cut(s)	306, 762
NmuCI	GTSAC	2 cut(s)	364, 456
PaeR7I	CTCGAG	1 cut(s)	311
PagI	TCATGA	1 cut(s)	839
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PdmI	GAANNNNTTC	1 cut(s)	80
PfeI	GAWTC	3 cut(s)	466, 569, 733
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	832
PluTI	GGCGCC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	832
Psp124BI	GAGCTC	1 cut(s)	447
PspN4I	GGNNCC	5 cut(s)	262, 298, 558, 621, 803
PspPI	GGNCC	1 cut(s)	481
PspXI	VCTCGAGB	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	556
RsaI	GTAC	1 cut(s)	262
RsaNI	GTAC	1 cut(s)	261
RseI	CAYNNNNRTG	2 cut(s)	528, 704
SacI	GAGCTC	1 cut(s)	447
SaqAI	TTAA	1 cut(s)	693
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	3 cut(s)	438, 556, 579
Sau96I	GGNCC	1 cut(s)	481
SchI	GAGTC	1 cut(s)	833
ScrFI	CCNGG	1 cut(s)	453
SduI	GDGCHC	2 cut(s)	447, 510
SfaNI	GCATC	2 cut(s)	200, 602
SfoI	GGCGCC	1 cut(s)	298
Sfr274I	CTCGAG	1 cut(s)	311
SinI	GGWCC	1 cut(s)	481
SlaI	CTCGAG	1 cut(s)	311
SmiMI	CAYNNNNRTG	2 cut(s)	528, 704
SmlI	CTYRAG	2 cut(s)	34, 311
SmoI	CTYRAG	2 cut(s)	34, 311
SpeI	ACTAGT	1 cut(s)	650
Sse9I	AATT	6 cut(s)	112, 225, 371, 383, 694, 763
SsiI	CCGC	4 cut(s)	264, 276, 475, 479
SspDI	GGCGCC	1 cut(s)	296
SspMI	CTAG	1 cut(s)	651
SstI	GAGCTC	1 cut(s)	447
StyD4I	CCNGG	1 cut(s)	451
TaaI	ACNGT	5 cut(s)	89, 307, 364, 400, 661
TaiI	ACGT	3 cut(s)	356, 434, 729
TaqI	TCGA	8 cut(s)	117, 196, 231, 282, 312, 375, 441, 447
TasI	AATT	6 cut(s)	112, 225, 371, 383, 694, 763
TfiI	GAWTC	3 cut(s)	466, 569, 733
Tru1I	TTAA	1 cut(s)	693
Tru9I	TTAA	1 cut(s)	693
TscAI	CASTG	5 cut(s)	94, 113, 226, 645, 817
TseFI	GTSAC	2 cut(s)	364, 456
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	364, 456
TspDTI	ATGAA	4 cut(s)	142, 302, 688, 828
TspRI	CASTG	5 cut(s)	94, 113, 226, 645, 817
VpaK11BI	GGWCC	1 cut(s)	481
XapI	RAATTY	2 cut(s)	371, 763
XcmI	CCANNNNNNNNNTGG	1 cut(s)	496
XhoI	CTCGAG	1 cut(s)	311
XmnI	GAANNNNTTC	1 cut(s)	80
XspI	CTAG	1 cut(s)	651
ZraI	GACGTC	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.