Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0009091

Physical Location & Seq

Genomic Coordinates Forward (+)

28989069 .. 28991153

Gene Structure 2085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1240700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCAGTGGCACTCTCAACAACTCCTCAACCCTGTGTTGTACAAAAGTTCCACTCTGTCTCCTCCAAAACCCTCCGAAATTTCAACCCCCTTTTCAAACCCTCCACTCAAACCCTCTTCCTCAGCTTCCAAAAACCCAAAACCCATCTCCAATCTCCTCCTCGCAACACAATCCGATGCCTTTTCACCGGCATTGTCGAGGAAATGGGCCAAATCAAGCAACTTGGCACCTCCCAAAACGGCGGTTTCGACATGAAAATCGGCGCCAAAACCGTTCTGGAGGGCGTTCACCTCGGGGATAGCATTGCAGTCAATGGAACGTGCCTGACGGTGACTGAATTCGATACCCAATTGTCCGATTTCACAGTCGGTCTGTCGCCGGAGACGCTTAGGAAGACGTCTCTGATCGAGCTCGAAGCCGGGTCACTTGTGAATTTGGAGCGGGCGGTGCAGCCCACCAGCAGAATGGGCGGGCACTTTGTGCAGGGTCATGTGGATGGCACAGGGGAGATAGTGTCAATGGAGCCCGAGGGTGATTCGCTGTGGATCAAGGTAAAGGCATCAAAGGAGGTGTTGAAGTATGTGGTGCCGAAAGGGTTTATAGCCGTCGATGGTACTAGTTTGACTGTGGTGGATGTGTTTGATAAAGAAGAGTGCTTTAATTTCATGTTGGTTGCTTATACTCAACAGAAAGTGGTGATTCCGTTGAAGAAAATCAGGTCAAAGGTGAATTTGGAGGTTGATATACTCGGGAAGTATGTCGAAAGACTTCTCAGTAGCGGGTCATCACCCATGCGGCTTGTACACACTTGTGATTGGGTTAGCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004746 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009987 GO:0016740 GO:0016765 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Lum_binding

Protein Analysis

277

Amino Acids

30.31

Weight (kDa)

8.22

Isoelectric Point (pI)

29.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lum_binding	PF00677	63 - 149	1.5e-21	Lumazine binding domain
Lum_binding	PF00677	162 - 248	6.3e-22	Lumazine binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20690
fragaria_vesca	FvH4_5g33380 FvH4_5g33380 FvH4_5g33380 FvH4_5g33380
malus_domestica	MD09G1247800.v1.1 MD17G1240700.v1.1
prunus_persica	Prupe.3G137500_v2.0.a1 Prupe.3G137500_v2.0.a1 Prupe.3G137500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0232111
rosa_laevigata	RLG00000001390
rosa_multiflora	Rmu_co8217730.1_g000001 Rmu_sc0000616.1_g000009 Rmu_sc0004618.1_g000003
rosa_roxburghii	Rroxscaffold_3G00228800
rosa_rugosa	Rorug07G0269300
rosa_samantha	Rh7AG423700 Rh7BG397800 Rh7CG444200 Rh7DG415900
rosa_wichuraiana	Rw7G035050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	401
AccB1I	GGYRCC	3 cut(s)	227, 263, 586
AccBSI	CCGCTC	1 cut(s)	442
AciI	CCGC	6 cut(s)	243, 442, 446, 471, 780, 796
AclWI	GGATC	1 cut(s)	554
AcsI	RAATTY	4 cut(s)	79, 338, 433, 730
AcyI	GRCGYC	2 cut(s)	264, 398
AdeI	CACNNNGTG	1 cut(s)	481
AfaI	GTAC	3 cut(s)	42, 616, 804
AgsI	TTSAA	4 cut(s)	85, 97, 577, 709
AhlI	ACTAGT	1 cut(s)	617
AleI	CACNNNNGTG	1 cut(s)	810
AluBI	AGCT	2 cut(s)	126, 412
AluI	AGCT	2 cut(s)	126, 412
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	3 cut(s)	64, 377, 405
AlwI	GGATC	1 cut(s)	554
Ama87I	CYCGRG	3 cut(s)	293, 527, 749
AoxI	GGCC	1 cut(s)	208
ApeKI	GCWGC	1 cut(s)	451
ApoI	RAATTY	4 cut(s)	79, 338, 433, 730
Asp700I	GAANNNNTTC	1 cut(s)	768
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	1 cut(s)	208
AsuC2I	CCSGG	1 cut(s)	421
AsuHPI	GGTGA	7 cut(s)	178, 281, 343, 545, 709, 739, 780
AvaI	CYCGRG	3 cut(s)	293, 527, 749
BaeGI	GKGCMC	1 cut(s)	477
BanI	GGYRCC	3 cut(s)	227, 263, 586
BanII	GRGCYC	2 cut(s)	414, 528
BbsI	GAAGAC	1 cut(s)	401
Bbv12I	GWGCWC	1 cut(s)	414
BbvCI	CCTCAGC	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	3 cut(s)	153, 491, 605
BceAI	ACGGC	2 cut(s)	256, 590
BcnI	CCSGG	1 cut(s)	421
BcoDI	GTCTC	3 cut(s)	64, 377, 405
BcuI	ACTAGT	1 cut(s)	617
BfaI	CTAG	1 cut(s)	618
BfoI	RGCGCY	1 cut(s)	267
BisI	GCNGC	2 cut(s)	452, 797
BlsI	GCNGC	2 cut(s)	453, 798
Bme1390I	CCNGG	1 cut(s)	421
BmeT110I	CYCGRG	3 cut(s)	293, 527, 749
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	4 cut(s)	229, 265, 525, 588
BmrFI	CCNGG	1 cut(s)	421
BmsI	GCATC	2 cut(s)	167, 569
BpiI	GAAGAC	1 cut(s)	401
BpmI	CTGGAG	1 cut(s)	299
Bpu10I	CCTNAGC	2 cut(s)	122, 389
BpuMI	CCSGG	1 cut(s)	421
BsaHI	GRCGYC	2 cut(s)	264, 398
BsaJI	CCNNGG	2 cut(s)	292, 528
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 500, 530
Bse118I	RCCGGY	1 cut(s)	188
Bse3DI	GCAATG	1 cut(s)	303
BseDI	CCNNGG	2 cut(s)	292, 528
BseGI	GGATG	2 cut(s)	502, 640
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	2 cut(s)	136, 787
BseRI	GAGGAG	4 cut(s)	15, 52, 147, 150
BseSI	GKGCMC	1 cut(s)	477
BseXI	GCAGC	1 cut(s)	463
BsgI	GTGCAG	2 cut(s)	470, 503
BshFI	GGCC	1 cut(s)	210
BshNI	GGYRCC	3 cut(s)	227, 263, 586
BsiHKAI	GWGCWC	1 cut(s)	414
BsiHKCI	CYCGRG	3 cut(s)	293, 527, 749
BsiSI	CCGG	3 cut(s)	189, 380, 420
BsmAI	GTCTC	3 cut(s)	64, 377, 405
BsmBI	CGTCTC	2 cut(s)	377, 405
BsnI	GGCC	1 cut(s)	210
BsoBI	CYCGRG	3 cut(s)	293, 527, 749
Bsp1286I	GDGCHC	3 cut(s)	414, 477, 528
Bsp1407I	TGTACA	2 cut(s)	40, 802
Bsp143I	GATC	2 cut(s)	405, 546
BspACI	CCGC	6 cut(s)	243, 442, 446, 471, 780, 796
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	2 cut(s)	135, 786
BspLI	GGNNCC	4 cut(s)	229, 265, 525, 588
BspPI	GGATC	1 cut(s)	554
BspT107I	GGYRCC	3 cut(s)	227, 263, 586
BsrBI	CCGCTC	1 cut(s)	442
BsrDI	GCAATG	1 cut(s)	303
BsrFI	RCCGGY	1 cut(s)	188
BsrGI	TGTACA	2 cut(s)	40, 802
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	292, 528
BssMI	GATC	2 cut(s)	405, 546
BssNI	GRCGYC	2 cut(s)	264, 398
Bst4CI	ACNGT	4 cut(s)	274, 331, 367, 628
Bst6I	CTCTTC	2 cut(s)	122, 645
BstACI	GRCGYC	2 cut(s)	264, 398
BstAPI	GCANNNNNTGC	1 cut(s)	481
BstAUI	TGTACA	2 cut(s)	40, 802
BstC8I	GCNNGC	2 cut(s)	444, 473
BstDEI	CTNAG	3 cut(s)	122, 389, 773
BstF5I	GGATG	2 cut(s)	502, 640
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	2 cut(s)	408, 549
BstMAI	GTCTC	3 cut(s)	64, 377, 405
BstMBI	GATC	2 cut(s)	405, 546
BstMWI	GCNNNNNNNGC	4 cut(s)	385, 448, 468, 481
BstSCI	CCNGG	1 cut(s)	419
BstSLI	GKGCMC	1 cut(s)	477
BstV1I	GCAGC	1 cut(s)	463
BstV2I	GAAGAC	1 cut(s)	401
BstXI	CCANNNNNNTGG	1 cut(s)	466
BsuRI	GGCC	1 cut(s)	210
BtsCI	GGATG	2 cut(s)	502, 640
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	12
Cac8I	GCNNGC	2 cut(s)	444, 473
CfoI	GCGC	1 cut(s)	266
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	208
CseI	GACGC	1 cut(s)	394
Csp6I	GTAC	3 cut(s)	41, 615, 803
CviAII	CATG	4 cut(s)	253, 491, 667, 793
CviJI	RGCY	8 cut(s)	126, 210, 412, 419, 454, 526, 605, 799
CviKI_1	RGCY	8 cut(s)	126, 210, 412, 419, 454, 526, 605, 799
CviQI	GTAC	3 cut(s)	41, 615, 803
DdeI	CTNAG	3 cut(s)	122, 389, 773
DinI	GGCGCC	1 cut(s)	265
DpnI	GATC	2 cut(s)	407, 548
DpnII	GATC	2 cut(s)	405, 546
DraIII	CACNNNGTG	1 cut(s)	481
Eam1104I	CTCTTC	2 cut(s)	122, 645
EarI	CTCTTC	2 cut(s)	122, 645
Ecl136II	GAGCTC	1 cut(s)	412
Eco24I	GRGCYC	2 cut(s)	414, 528
Eco53kI	GAGCTC	1 cut(s)	412
Eco88I	CYCGRG	3 cut(s)	293, 527, 749
EcoICRI	GAGCTC	1 cut(s)	412
EcoRI	GAATTC	1 cut(s)	338
EcoT38I	GRGCYC	2 cut(s)	414, 528
EgeI	GGCGCC	1 cut(s)	265
EheI	GGCGCC	1 cut(s)	265
Esp3I	CGTCTC	2 cut(s)	377, 405
FaeI	CATG	4 cut(s)	256, 494, 670, 796
FaiI	YATR	9 cut(s)	254, 492, 582, 602, 668, 681, 746, 759, 794
FatI	CATG	4 cut(s)	252, 490, 666, 792
FauI	CCCGC	3 cut(s)	435, 464, 773
Fnu4HI	GCNGC	2 cut(s)	452, 797
FokI	GGATG	2 cut(s)	509, 647
FriOI	GRGCYC	2 cut(s)	414, 528
Fsp4HI	GCNGC	2 cut(s)	452, 797
FspBI	CTAG	1 cut(s)	618
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	2 cut(s)	452, 797
GsuI	CTGGAG	1 cut(s)	299
HaeII	RGCGCY	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	210
HapII	CCGG	3 cut(s)	189, 380, 420
HgaI	GACGC	1 cut(s)	394
HhaI	GCGC	1 cut(s)	266
Hin1I	GRCGYC	2 cut(s)	264, 398
Hin1II	CATG	4 cut(s)	256, 494, 670, 796
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HinfI	GANTC	2 cut(s)	536, 700
HpaII	CCGG	3 cut(s)	189, 380, 420
HphI	GGTGA	7 cut(s)	178, 281, 343, 545, 709, 739, 780
Hpy166II	GTNNAC	2 cut(s)	289, 805
Hpy188I	TCNGA	4 cut(s)	77, 176, 358, 405
Hpy188III	TCNNGA	2 cut(s)	278, 751
Hpy8I	GTNNAC	2 cut(s)	289, 805
Hpy99I	CGWCG	1 cut(s)	611
HpyCH4III	ACNGT	4 cut(s)	274, 331, 367, 628
HpyCH4IV	ACGT	2 cut(s)	320, 398
HpyCH4V	TGCA	3 cut(s)	308, 451, 484
HpyF10VI	GCNNNNNNNGC	4 cut(s)	385, 448, 468, 481
HpyF3I	CTNAG	3 cut(s)	122, 389, 773
HpySE526I	ACGT	2 cut(s)	320, 398
Hsp92I	GRCGYC	2 cut(s)	264, 398
Hsp92II	CATG	4 cut(s)	256, 494, 670, 796
HspAI	GCGC	1 cut(s)	264
KasI	GGCGCC	1 cut(s)	263
Kzo9I	GATC	2 cut(s)	405, 546
LmnI	GCTCC	2 cut(s)	439, 523
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	2 cut(s)	167, 569
MaeI	CTAG	1 cut(s)	618
MaeII	ACGT	2 cut(s)	320, 398
MaeIII	GTNAC	2 cut(s)	331, 423
MalI	GATC	2 cut(s)	407, 548
MbiI	CCGCTC	1 cut(s)	442
MboI	GATC	2 cut(s)	405, 546
MboII	GAAGA	4 cut(s)	109, 406, 662, 721
MfeI	CAATTG	1 cut(s)	350
MhlI	GDGCHC	3 cut(s)	414, 477, 528
MluCI	AATT	6 cut(s)	79, 338, 350, 433, 661, 730
Mly113I	GGCGCC	1 cut(s)	264
MroXI	GAANNNNTTC	1 cut(s)	768
MseI	TTAA	1 cut(s)	660
MslI	CAYNNNNRTG	2 cut(s)	495, 810
MspI	CCGG	3 cut(s)	189, 380, 420
MspR9I	CCNGG	1 cut(s)	421
MunI	CAATTG	1 cut(s)	350
MwoI	GCNNNNNNNGC	4 cut(s)	385, 448, 468, 481
NarI	GGCGCC	1 cut(s)	264
NciI	CCSGG	1 cut(s)	421
NdeII	GATC	2 cut(s)	405, 546
NlaIII	CATG	4 cut(s)	256, 494, 670, 796
NlaIV	GGNNCC	4 cut(s)	229, 265, 525, 588
NmuCI	GTSAC	2 cut(s)	331, 423
OliI	CACNNNNGTG	1 cut(s)	810
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PdmI	GAANNNNTTC	1 cut(s)	768
PfeI	GAWTC	2 cut(s)	536, 700
PkrI	GCNGC	2 cut(s)	453, 798
PluTI	GGCGCC	1 cut(s)	267
Psp124BI	GAGCTC	1 cut(s)	414
PspN4I	GGNNCC	4 cut(s)	229, 265, 525, 588
PspPI	GGNCC	1 cut(s)	208
RsaI	GTAC	3 cut(s)	42, 616, 804
RsaNI	GTAC	3 cut(s)	41, 615, 803
RseI	CAYNNNNRTG	2 cut(s)	495, 810
SacI	GAGCTC	1 cut(s)	414
SaqAI	TTAA	1 cut(s)	660
SatI	GCNGC	2 cut(s)	452, 797
Sau3AI	GATC	2 cut(s)	405, 546
Sau96I	GGNCC	1 cut(s)	208
ScrFI	CCNGG	1 cut(s)	421
SduI	GDGCHC	3 cut(s)	414, 477, 528
SfaNI	GCATC	2 cut(s)	167, 569
SfoI	GGCGCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	2 cut(s)	495, 810
SpeI	ACTAGT	1 cut(s)	617
Sse9I	AATT	6 cut(s)	79, 338, 350, 433, 661, 730
SsiI	CCGC	6 cut(s)	243, 442, 446, 471, 780, 796
SspDI	GGCGCC	1 cut(s)	263
SspMI	CTAG	1 cut(s)	618
SstI	GAGCTC	1 cut(s)	414
StyD4I	CCNGG	1 cut(s)	419
TaaI	ACNGT	4 cut(s)	274, 331, 367, 628
TaiI	ACGT	2 cut(s)	323, 401
TaqI	TCGA	7 cut(s)	198, 249, 342, 408, 414, 609, 762
TaqII	GACCGA	1 cut(s)	359
TasI	AATT	6 cut(s)	79, 338, 350, 433, 661, 730
TatI	WGTACW	2 cut(s)	40, 802
TauI	GCSGC	1 cut(s)	799
TfiI	GAWTC	2 cut(s)	536, 700
Tru1I	TTAA	1 cut(s)	660
Tru9I	TTAA	1 cut(s)	660
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	2 cut(s)	331, 423
TseI	GCWGC	1 cut(s)	451
Tsp45I	GTSAC	2 cut(s)	331, 423
TspDTI	ATGAA	2 cut(s)	269, 655
TspGWI	ACGGA	1 cut(s)	693
TspRI	CASTG	1 cut(s)	12
XapI	RAATTY	4 cut(s)	79, 338, 433, 730
XcmI	CCANNNNNNNNNTGG	2 cut(s)	274, 463
XmnI	GAANNNNTTC	1 cut(s)	768
XspI	CTAG	1 cut(s)	618
ZraI	GACGTC	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.