Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0009091

Physical Location & Seq

Genomic Coordinates Reverse (-)

25393573 .. 25405547

Gene Structure 11975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0269300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGGGAGAGCAGAACAATCCCGAATATGTTGTAGTTAGTGAAGCACAATCCCCTAGGGTAAATAACTTCAAGAAAGTCTCAGTTCTGCCCCTTGTCTTCCTCATCTTCTATGAGGTATCTGGGGGTCCATTTGGTATTGAGGACAGTGTTCAGGCTGCCGGTCCCCTTCTAGCGCTTCTCGGGTTCTTGGTCTTTCCATTCATTTGGAGTGTTCCTGAGGCCTTGATTACTGCAGAGATGGGTACCATGTTCCCTGTGAATGGGGGTTATGTGGTTTGGGTTTCTTCGGCCCTGGGTCCATTTTGGGGGTTTCAACAAGGATGGGTGAAATGGTTAAGTGGAGTCATTGATAATGCTTTGTACCCAGTTCTGTTTTTGGACTACTTGAAGTCAGCAATACCAGCTTTAGGCGGTGGACTTCCAAGAATCGTGGCAGTGTTAGCTTTGACATTGTTCCTCACTTACTTAAACTATAGGGGTTTAACCATTGTGGGATGGGTTGCTGTACTTTTAGGGATTTTCTCAATCATTCCTTTTGTGGTTATGGGACTTGTGGCAATTCCCAAGTTGGAGCCTTCAAGATGGTTAGTGGTGAGTCTACATAATGTGGACTGGAATTTGTATTTGAACACTCTCTTTTGGAATTTGAACTATTGGGATTCTATAAGTACACTTGCCGGAGAGGTGGAGAACCCAAAGAAAACTCTCCCCAAGGCTCTTTTTTATGCGTTGATTTTGGTTGTTGTTGGATATTTCTTCCCCCTTTTAATTGGTACTGGGGCTGTTCCGCTTGATCGTGAGTTGTGGACTGATGGTTACTTCTCTGATATTGCAAAAATTGTTGGGGGAGTTTGGTTGAGAGGTTGGATCCAAGGGGCTGCGGCGATGTCAAATATGGGGATGTTTGTGGCCGAAATGAGCAGTGACTCTTTTCAACTTCTTGGGATGGCAGAGAGAGGGATGTTGCCTGAGTTCTTTGGTAAGCGGTCTCGTTATGGAACCCCAGTCATTGGCATTATGTTCTCAGCTTCCGGAGTCCTTTTGCTATCTTGGCTAAGCTTTCAAGAGATTGTAGCTGCAGAAAACTTCTTGTACTGTGTTGGAATGATTTTGGAGTTCATAGCATTTATAATATTACGGGTGAAGCATCCAGCTGCATCTCGGCCATACAAGATTCCTGTTGGAACAGTTGGAACCATACTTTTGTGCATTCCGCCAACCCTGCTAATTGGTGTAGTGTTGGCTCTTTCTGAACTCAAGGTTGTGGTTGTGAGCCTTATAGCTATAGTGATCGGTCTTGTGATGCAGCCCTGTCTCACATATGTTGAGAGGAAGAGGTGGATGAAGTTCTCCATCAGTTCTGATCTCCCAGATCTTAATGGTGCTAATCAGGAGAGTGCCAACTCCTTAATAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 NB-ARC TIR

Protein Analysis

472

Amino Acids

51.85

Weight (kDa)

5.43

Isoelectric Point (pI)

35.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	29 - 410	1.6e-40	Amino acid permease
AA_permease	PF00324	46 - 415	3e-20	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20690
fragaria_vesca	FvH4_5g33380 FvH4_5g33380 FvH4_5g33380 FvH4_5g33380
malus_domestica	MD09G1247800.v1.1 MD17G1240700.v1.1
prunus_persica	Prupe.3G137500_v2.0.a1 Prupe.3G137500_v2.0.a1 Prupe.3G137500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0232111
rosa_laevigata	RLG00000001390
rosa_multiflora	Rmu_co8217730.1_g000001 Rmu_sc0000616.1_g000009 Rmu_sc0004618.1_g000003
rosa_roxburghii	Rroxscaffold_3G00228800
rosa_rugosa	Rorug07G0269300
rosa_samantha	Rh7AG423700 Rh7BG397800 Rh7CG444200 Rh7DG415900
rosa_wichuraiana	Rw7G035050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1130
Acc65I	GGTACC	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	242
AccB7I	CCANNNNNTGG	1 cut(s)	1010
AccI	GTMKAC	1 cut(s)	598
AccIII	TCCGGA	1 cut(s)	1031
AciI	CCGC	5 cut(s)	411, 788, 881, 985, 1214
AclWI	GGATC	2 cut(s)	862, 875
AcoI	YGGCCR	2 cut(s)	909, 1163
AcsI	RAATTY	2 cut(s)	616, 643
AfaI	GTAC	6 cut(s)	244, 362, 507, 670, 775, 1094
AfeI	AGCGCT	1 cut(s)	174
AfiI	CCNNNNNNNGG	4 cut(s)	260, 305, 407, 1010
AgsI	TTSAA	8 cut(s)	70, 314, 388, 579, 628, 649, 935, 1064
AjnI	CCWGG	1 cut(s)	291
AluBI	AGCT	7 cut(s)	404, 443, 1028, 1059, 1076, 1154, 1283
AluI	AGCT	7 cut(s)	404, 443, 1028, 1059, 1076, 1154, 1283
Alw26I	GTCTC	3 cut(s)	82, 993, 1319
AlwI	GGATC	2 cut(s)	862, 875
Ama87I	CYCGRG	1 cut(s)	179
Aor13HI	TCCGGA	1 cut(s)	1031
Aor51HI	AGCGCT	1 cut(s)	174
AoxI	GGCC	4 cut(s)	219, 288, 909, 1163
ApeKI	GCWGC	5 cut(s)	155, 878, 1076, 1154, 1306
ApoI	RAATTY	2 cut(s)	616, 643
Asp718I	GGTACC	1 cut(s)	242
AspA2I	CCTAGG	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	4 cut(s)	125, 161, 289, 296
AsuHPI	GGTGA	3 cut(s)	337, 604, 1153
AvaI	CYCGRG	1 cut(s)	179
AvaII	GGWCC	3 cut(s)	125, 161, 296
AvrII	CCTAGG	1 cut(s)	53
AxyI	CCTNAGG	1 cut(s)	216
BamHI	GGATCC	1 cut(s)	867
BanI	GGYRCC	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	88
BbvI	GCAGC	5 cut(s)	142, 865, 1063, 1141, 1318
BccI	CCATC	7 cut(s)	232, 315, 489, 576, 806, 940, 1361
BciT130I	CCWGG	1 cut(s)	293
BcoDI	GTCTC	3 cut(s)	82, 993, 1319
BfaI	CTAG	2 cut(s)	54, 170
BfmI	CTRYAG	4 cut(s)	231, 472, 1077, 1284
BfoI	RGCGCY	1 cut(s)	176
BglII	AGATCT	1 cut(s)	1372
BisI	GCNGC	6 cut(s)	156, 879, 882, 1077, 1155, 1307
BlnI	CCTAGG	1 cut(s)	53
BlpI	GCTNAGC	1 cut(s)	1055
BlsI	GCNGC	6 cut(s)	157, 880, 883, 1078, 1156, 1308
Bme1390I	CCNGG	1 cut(s)	293
Bme18I	GGWCC	3 cut(s)	125, 161, 296
BmeT110I	CYCGRG	1 cut(s)	179
BmgT120I	GGNCC	4 cut(s)	125, 161, 289, 296
BmiI	GGNNCC	8 cut(s)	126, 163, 244, 297, 573, 869, 1000, 1195
BmrFI	CCNGG	1 cut(s)	293
BmrI	ACTGGG	3 cut(s)	359, 786, 998
BmsI	GCATC	3 cut(s)	1156, 1166, 1293
BmuI	ACTGGG	3 cut(s)	359, 786, 998
BpiI	GAAGAC	1 cut(s)	88
Bpu1102I	GCTNAGC	1 cut(s)	1055
BpuEI	CTTGAG	1 cut(s)	1241
BsaI	GGTCTC	1 cut(s)	993
BsaJI	CCNNGG	5 cut(s)	53, 291, 292, 711, 871
BsaWI	WCCGGW	1 cut(s)	1031
Bsc4I	CCNNNNNNNGG	4 cut(s)	260, 305, 407, 1010
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	4 cut(s)	365, 617, 781, 1004
Bse21I	CCTNAGG	1 cut(s)	216
BseAI	TCCGGA	1 cut(s)	1031
BseBI	CCWGG	1 cut(s)	293
BseDI	CCNNGG	5 cut(s)	53, 291, 292, 711, 871
BseGI	GGATG	7 cut(s)	326, 500, 906, 951, 966, 1147, 1347
BseLI	CCNNNNNNNGG	4 cut(s)	260, 305, 407, 1010
BseMII	CTCAG	4 cut(s)	93, 207, 960, 1038
BseNI	ACTGG	4 cut(s)	365, 617, 781, 1004
BseXI	GCAGC	5 cut(s)	142, 865, 1063, 1141, 1318
BshFI	GGCC	4 cut(s)	221, 290, 911, 1165
BshNI	GGYRCC	1 cut(s)	242
BsiHKCI	CYCGRG	1 cut(s)	179
BsiSI	CCGG	3 cut(s)	159, 678, 1032
BslFI	GGGAC	2 cut(s)	147, 561
BslI	CCNNNNNNNGG	4 cut(s)	260, 305, 407, 1010
BsmAI	GTCTC	3 cut(s)	82, 993, 1319
BsmFI	GGGAC	2 cut(s)	147, 561
BsmI	GAATGC	1 cut(s)	1209
BsnI	GGCC	4 cut(s)	221, 290, 911, 1165
Bso31I	GGTCTC	1 cut(s)	993
BsoBI	CYCGRG	1 cut(s)	179
Bsp13I	TCCGGA	1 cut(s)	1031
Bsp143I	GATC	5 cut(s)	793, 867, 1290, 1363, 1372
Bsp1720I	GCTNAGC	1 cut(s)	1055
BspACI	CCGC	5 cut(s)	411, 788, 881, 985, 1214
BspANI	GGCC	4 cut(s)	221, 290, 911, 1165
BspCNI	CTCAG	4 cut(s)	92, 208, 961, 1037
BspEI	TCCGGA	1 cut(s)	1031
BspLI	GGNNCC	8 cut(s)	126, 163, 244, 297, 573, 869, 1000, 1195
BspMAI	CTGCAG	2 cut(s)	235, 1081
BspPI	GGATC	2 cut(s)	862, 875
BspT107I	GGYRCC	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	993
BsrFI	RCCGGY	1 cut(s)	158
BsrI	ACTGG	4 cut(s)	365, 617, 781, 1004
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	5 cut(s)	53, 291, 292, 711, 871
BssMI	GATC	5 cut(s)	793, 867, 1290, 1363, 1372
BssT1I	CCWWGG	3 cut(s)	53, 711, 871
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	3 cut(s)	146, 1097, 1189
Bst6I	CTCTTC	1 cut(s)	1328
BstDEI	CTNAG	5 cut(s)	79, 216, 969, 1024, 1055
BstF5I	GGATG	7 cut(s)	326, 500, 906, 951, 966, 1147, 1347
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	5 cut(s)	796, 870, 1293, 1366, 1375
BstMAI	GTCTC	3 cut(s)	82, 993, 1319
BstMBI	GATC	5 cut(s)	793, 867, 1290, 1363, 1372
BstMWI	GCNNNNNNNGC	4 cut(s)	401, 440, 1051, 1222
BstNI	CCWGG	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	291
BstSFI	CTRYAG	4 cut(s)	231, 472, 1077, 1284
BstV1I	GCAGC	5 cut(s)	142, 865, 1063, 1141, 1318
BstV2I	GAAGAC	1 cut(s)	88
BstX2I	RGATCY	2 cut(s)	867, 1372
BstXI	CCANNNNNNTGG	1 cut(s)	204
BstYI	RGATCY	2 cut(s)	867, 1372
Bsu36I	CCTNAGG	1 cut(s)	216
BsuRI	GGCC	4 cut(s)	221, 290, 911, 1165
BtgZI	GCGATG	1 cut(s)	899
BtsCI	GGATG	7 cut(s)	326, 500, 906, 951, 966, 1147, 1347
BtsI	GCAGTG	2 cut(s)	441, 928
BtsIMutI	CAGTG	3 cut(s)	151, 441, 928
CfoI	GCGC	1 cut(s)	175
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	4 cut(s)	125, 161, 289, 296
Csp6I	GTAC	6 cut(s)	243, 361, 506, 669, 774, 1093
CspCI	CAANNNNNGTGG	2 cut(s)	411, 446
CviAII	CATG	1 cut(s)	247
CviQI	GTAC	6 cut(s)	243, 361, 506, 669, 774, 1093
DdeI	CTNAG	5 cut(s)	79, 216, 969, 1024, 1055
DpnI	GATC	5 cut(s)	795, 869, 1292, 1365, 1374
DpnII	GATC	5 cut(s)	793, 867, 1290, 1363, 1372
EaeI	YGGCCR	2 cut(s)	909, 1163
Eam1104I	CTCTTC	1 cut(s)	1328
EarI	CTCTTC	1 cut(s)	1328
EciI	GGCGGA	1 cut(s)	1203
Eco130I	CCWWGG	3 cut(s)	53, 711, 871
Eco147I	AGGCCT	1 cut(s)	221
Eco31I	GGTCTC	1 cut(s)	993
Eco47I	GGWCC	3 cut(s)	125, 161, 296
Eco47III	AGCGCT	1 cut(s)	174
Eco81I	CCTNAGG	1 cut(s)	216
Eco88I	CYCGRG	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	291
EcoT14I	CCWWGG	3 cut(s)	53, 711, 871
ErhI	CCWWGG	3 cut(s)	53, 711, 871
FaeI	CATG	1 cut(s)	250
FaqI	GGGAC	2 cut(s)	147, 561
FatI	CATG	1 cut(s)	246
FauNDI	CATATG	1 cut(s)	1321
FblI	GTMKAC	1 cut(s)	598
Fnu4HI	GCNGC	6 cut(s)	156, 879, 882, 1077, 1155, 1307
FokI	GGATG	7 cut(s)	333, 507, 913, 958, 973, 1134, 1354
Fsp4HI	GCNGC	6 cut(s)	156, 879, 882, 1077, 1155, 1307
FspBI	CTAG	2 cut(s)	54, 170
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	6 cut(s)	156, 879, 882, 1077, 1155, 1307
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	4 cut(s)	221, 290, 911, 1165
HapII	CCGG	3 cut(s)	159, 678, 1032
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	1 cut(s)	250
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HindIII	AAGCTT	1 cut(s)	1057
HinfI	GANTC	7 cut(s)	342, 426, 595, 659, 926, 1035, 1174
HpaII	CCGG	3 cut(s)	159, 678, 1032
HphI	GGTGA	3 cut(s)	337, 604, 1153
Hpy166II	GTNNAC	5 cut(s)	416, 599, 610, 671, 807
Hpy188I	TCNGA	3 cut(s)	826, 1252, 1363
Hpy188III	TCNNGA	8 cut(s)	20, 70, 215, 579, 797, 1032, 1064, 1391
Hpy8I	GTNNAC	5 cut(s)	416, 599, 610, 671, 807
HpyAV	CCTTC	2 cut(s)	176, 585
HpyCH4III	ACNGT	3 cut(s)	146, 1097, 1189
HpyCH4V	TGCA	6 cut(s)	233, 833, 1079, 1157, 1209, 1306
HpyF10VI	GCNNNNNNNGC	4 cut(s)	401, 440, 1051, 1222
HpyF3I	CTNAG	5 cut(s)	79, 216, 969, 1024, 1055
Hsp92II	CATG	1 cut(s)	250
HspAI	GCGC	1 cut(s)	173
Kpn2I	TCCGGA	1 cut(s)	1031
KpnI	GGTACC	1 cut(s)	246
Kzo9I	GATC	5 cut(s)	793, 867, 1290, 1363, 1372
LmnI	GCTCC	1 cut(s)	571
Lsp1109I	GCAGC	5 cut(s)	142, 865, 1063, 1141, 1318
LweI	GCATC	3 cut(s)	1156, 1166, 1293
MaeI	CTAG	2 cut(s)	54, 170
MaeIII	GTNAC	2 cut(s)	815, 923
MalI	GATC	5 cut(s)	795, 869, 1292, 1365, 1374
MboI	GATC	5 cut(s)	793, 867, 1290, 1363, 1372
MboII	GAAGA	5 cut(s)	88, 97, 276, 748, 1345
MflI	RGATCY	2 cut(s)	867, 1372
MluCI	AATT	6 cut(s)	558, 616, 643, 768, 837, 1227
MlyI	GAGTC	4 cut(s)	351, 604, 920, 1044
MmeI	TCCRAC	6 cut(s)	549, 727, 845, 1081, 1162, 1171
MroI	TCCGGA	1 cut(s)	1031
MseI	TTAA	6 cut(s)	335, 467, 482, 767, 1377, 1409
MspA1I	CMGCKG	1 cut(s)	1154
MspI	CCGG	3 cut(s)	159, 678, 1032
MspR9I	CCNGG	1 cut(s)	293
Mva1269I	GAATGC	1 cut(s)	1209
MvaI	CCWGG	1 cut(s)	293
MwoI	GCNNNNNNNGC	4 cut(s)	401, 440, 1051, 1222
NdeI	CATATG	1 cut(s)	1321
NdeII	GATC	5 cut(s)	793, 867, 1290, 1363, 1372
NlaIII	CATG	1 cut(s)	250
NlaIV	GGNNCC	8 cut(s)	126, 163, 244, 297, 573, 869, 1000, 1195
NmeAIII	GCCGAG	1 cut(s)	1141
NmuCI	GTSAC	1 cut(s)	923
PasI	CCCWGGG	1 cut(s)	292
PceI	AGGCCT	1 cut(s)	221
PctI	GAATGC	1 cut(s)	1209
PfeI	GAWTC	3 cut(s)	426, 659, 1174
PflMI	CCANNNNNTGG	1 cut(s)	1010
PkrI	GCNGC	6 cut(s)	157, 880, 883, 1078, 1156, 1308
PleI	GAGTC	4 cut(s)	350, 603, 920, 1043
PpsI	GAGTC	4 cut(s)	350, 603, 920, 1043
PsiI	TTATAA	1 cut(s)	1130
Psp6I	CCWGG	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	291
PspN4I	GGNNCC	8 cut(s)	126, 163, 244, 297, 573, 869, 1000, 1195
PspPI	GGNCC	4 cut(s)	125, 161, 289, 296
PstI	CTGCAG	2 cut(s)	235, 1081
PsuI	RGATCY	2 cut(s)	867, 1372
PvuII	CAGCTG	1 cut(s)	1154
RsaI	GTAC	6 cut(s)	244, 362, 507, 670, 775, 1094
RsaNI	GTAC	6 cut(s)	243, 361, 506, 669, 774, 1093
SaqAI	TTAA	6 cut(s)	335, 467, 482, 767, 1377, 1409
SatI	GCNGC	6 cut(s)	156, 879, 882, 1077, 1155, 1307
Sau3AI	GATC	5 cut(s)	793, 867, 1290, 1363, 1372
Sau96I	GGNCC	4 cut(s)	125, 161, 289, 296
SchI	GAGTC	4 cut(s)	351, 604, 920, 1044
ScrFI	CCNGG	1 cut(s)	293
SfaNI	GCATC	3 cut(s)	1156, 1166, 1293
SfcI	CTRYAG	4 cut(s)	231, 472, 1077, 1284
SinI	GGWCC	3 cut(s)	125, 161, 296
SmlI	CTYRAG	1 cut(s)	1256
SmoI	CTYRAG	1 cut(s)	1256
Sse9I	AATT	6 cut(s)	558, 616, 643, 768, 837, 1227
SseBI	AGGCCT	1 cut(s)	221
SsiI	CCGC	5 cut(s)	411, 788, 881, 985, 1214
SspI	AATATT	1 cut(s)	1134
SspMI	CTAG	2 cut(s)	54, 170
StuI	AGGCCT	1 cut(s)	221
StyD4I	CCNGG	1 cut(s)	291
StyI	CCWWGG	3 cut(s)	53, 711, 871
TaaI	ACNGT	3 cut(s)	146, 1097, 1189
TaqII	GACCGA	1 cut(s)	1283
TasI	AATT	6 cut(s)	558, 616, 643, 768, 837, 1227
TatI	WGTACW	3 cut(s)	505, 668, 1092
TauI	GCSGC	1 cut(s)	884
TfiI	GAWTC	3 cut(s)	426, 659, 1174
Tru1I	TTAA	6 cut(s)	335, 467, 482, 767, 1377, 1409
Tru9I	TTAA	6 cut(s)	335, 467, 482, 767, 1377, 1409
TscAI	CASTG	3 cut(s)	151, 441, 928
TseFI	GTSAC	1 cut(s)	923
TseI	GCWGC	5 cut(s)	155, 878, 1076, 1154, 1306
Tsp45I	GTSAC	1 cut(s)	923
TspDTI	ATGAA	3 cut(s)	190, 1108, 1358
TspRI	CASTG	3 cut(s)	151, 441, 928
Van91I	CCANNNNNTGG	1 cut(s)	1010
VpaK11BI	GGWCC	3 cut(s)	125, 161, 296
XapI	RAATTY	2 cut(s)	616, 643
XmaJI	CCTAGG	1 cut(s)	53
XmiI	GTMKAC	1 cut(s)	598
XspI	CTAG	2 cut(s)	54, 170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.