Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0009091

Physical Location & Seq

Genomic Coordinates Forward (+)

31781986 .. 31783597

Gene Structure 1612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1247800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCGGTTTCACTCTCAAGAACTCCTCAACCCTGTGTTGGACAAATCTCAATCATGAACAAGTTTCACACCATCTCATCCAAAACCCTCCGCAGTTTCAATCCCCTTTTCAAGCCCTCCACTCAAACCCTCTTCCTCAGCTCCCAAAAACCCAAAACCAATCGCCAATATCCTCCTCGCAACACAATCCGATGCCTTTTCACCGGCATCGTCGAGGAAATGGGCCGAGTCAAGCAACTGGGCACGGCCCAAAACGGCGGTTTCGACATGAAAATCGGCGCCAAAACCGTTCTGGAGGGCGTTCACCTCGGGGATAGCATTGCCGTCAACGGAACGTGCCTGACCGTGACTGAATTCGATACCCAGTTGTCGGATTTCACAGTCGGGCTGTCCCCCGAGACGCTTAGGAAGACGTCTCTGATCGAGCTCGAATCGGGATCACTTGTGAATTTGGAGCGGGCGGTGCAGCCCACGAGCCGAATGGGCGGGCACTTTGTGCAGGGTCATGTGGATGGCACAGGGGAGATAGTGTCCGTGGAGCCCGAGGGCGATTCGCTGTGGATCAAGGTAAAGGCATCGAAGGAGGTGTTGAAGTATGTGGTGCCGAAAGGGTTTATAGCAGTAGATGGAACTAGTTTGACGGTGGTGGATGTGTTTGATAAAGAAGAGTGCTTTAATTTCATGTTGGTTGCTTACACTCAGCAGAAGGTGGTGATTCCGTTGAAGAAGGTCGGGTCGAAGGTTAATTTGGAGGTTGACATACTCGGGAAGTATGTCGAAAGACTTCTCAGTAGTGGGTTTGTTGAGTCAATCAAATCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004746 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009987 GO:0016740 GO:0016765 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Lum_binding

Protein Analysis

275

Amino Acids

29.96

Weight (kDa)

8.8

Isoelectric Point (pI)

26.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lum_binding	PF00677	68 - 154	2.4e-21	Lumazine binding domain
Lum_binding	PF00677	167 - 253	2.9e-23	Lumazine binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20690
fragaria_vesca	FvH4_5g33380 FvH4_5g33380 FvH4_5g33380 FvH4_5g33380
malus_domestica	MD09G1247800.v1.1 MD17G1240700.v1.1
prunus_persica	Prupe.3G137500_v2.0.a1 Prupe.3G137500_v2.0.a1 Prupe.3G137500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0232111
rosa_laevigata	RLG00000001390
rosa_multiflora	Rmu_co8217730.1_g000001 Rmu_sc0000616.1_g000009 Rmu_sc0004618.1_g000003
rosa_roxburghii	Rroxscaffold_3G00228800
rosa_rugosa	Rorug07G0269300
rosa_samantha	Rh7AG423700 Rh7BG397800 Rh7CG444200 Rh7DG415900
rosa_wichuraiana	Rw7G035050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	416
AccB1I	GGYRCC	2 cut(s)	278, 601
AccBSI	CCGCTC	1 cut(s)	457
AciI	CCGC	6 cut(s)	5, 91, 258, 457, 461, 486
AclWI	GGATC	2 cut(s)	445, 569
AcsI	RAATTY	2 cut(s)	353, 448
AcyI	GRCGYC	2 cut(s)	279, 413
AdeI	CACNNNGTG	1 cut(s)	496
AfiI	CCNNNNNNNGG	2 cut(s)	38, 370
AgsI	TTSAA	4 cut(s)	100, 112, 592, 724
AhlI	ACTAGT	1 cut(s)	632
AjuI	GAANNNNNNNTTGG	2 cut(s)	731, 763
AluBI	AGCT	2 cut(s)	141, 427
AluI	AGCT	2 cut(s)	141, 427
Alw21I	GWGCWC	1 cut(s)	429
Alw26I	GTCTC	2 cut(s)	392, 420
AlwI	GGATC	2 cut(s)	445, 569
Ama87I	CYCGRG	4 cut(s)	308, 395, 542, 764
AoxI	GGCC	2 cut(s)	223, 246
ApeKI	GCWGC	1 cut(s)	466
ApoI	RAATTY	2 cut(s)	353, 448
Asp700I	GAANNNNTTC	1 cut(s)	783
AspLEI	GCGC	1 cut(s)	281
AspS9I	GGNCC	2 cut(s)	223, 247
AsuHPI	GGTGA	3 cut(s)	193, 296, 724
AvaI	CYCGRG	4 cut(s)	308, 395, 542, 764
BaeGI	GKGCMC	2 cut(s)	245, 492
BanI	GGYRCC	2 cut(s)	278, 601
BanII	GRGCYC	2 cut(s)	429, 543
BauI	CACGAG	1 cut(s)	472
BbsI	GAAGAC	1 cut(s)	416
Bbv12I	GWGCWC	1 cut(s)	429
BbvCI	CCTCAGC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	478
BccI	CCATC	3 cut(s)	80, 506, 620
BceAI	ACGGC	3 cut(s)	261, 271, 308
BcoDI	GTCTC	2 cut(s)	392, 420
BcuI	ACTAGT	1 cut(s)	632
BfaI	CTAG	1 cut(s)	633
BfoI	RGCGCY	1 cut(s)	282
BglI	GCCNNNNNGGC	1 cut(s)	483
BisI	GCNGC	1 cut(s)	467
BlsI	GCNGC	1 cut(s)	468
BmeT110I	CYCGRG	4 cut(s)	308, 395, 542, 764
BmgT120I	GGNCC	2 cut(s)	223, 247
BmiI	GGNNCC	3 cut(s)	280, 540, 603
BmrI	ACTGGG	2 cut(s)	248, 358
BmsI	GCATC	3 cut(s)	182, 216, 584
BmuI	ACTGGG	2 cut(s)	248, 358
BpiI	GAAGAC	1 cut(s)	416
BpmI	CTGGAG	1 cut(s)	314
Bpu10I	CCTNAGC	2 cut(s)	137, 404
BsaHI	GRCGYC	2 cut(s)	279, 413
BsaJI	CCNNGG	3 cut(s)	307, 534, 543
BsaXI	ACNNNNNCTCC	2 cut(s)	515, 545
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 370
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	2 cut(s)	243, 364
Bse3DI	GCAATG	1 cut(s)	318
BseDI	CCNNGG	3 cut(s)	307, 534, 543
BseGI	GGATG	3 cut(s)	77, 517, 655
BseLI	CCNNNNNNNGG	2 cut(s)	38, 370
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	3 cut(s)	151, 713, 802
BseNI	ACTGG	2 cut(s)	243, 364
BseRI	GAGGAG	2 cut(s)	15, 165
BseSI	GKGCMC	2 cut(s)	245, 492
BseXI	GCAGC	1 cut(s)	478
BsgI	GTGCAG	2 cut(s)	485, 518
BshFI	GGCC	2 cut(s)	225, 248
BshNI	GGYRCC	2 cut(s)	278, 601
BsiHKAI	GWGCWC	1 cut(s)	429
BsiHKCI	CYCGRG	4 cut(s)	308, 395, 542, 764
BsiSI	CCGG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	376
BslI	CCNNNNNNNGG	2 cut(s)	38, 370
BsmAI	GTCTC	2 cut(s)	392, 420
BsmBI	CGTCTC	2 cut(s)	392, 420
BsmFI	GGGAC	1 cut(s)	376
BsnI	GGCC	2 cut(s)	225, 248
BsoBI	CYCGRG	4 cut(s)	308, 395, 542, 764
Bsp1286I	GDGCHC	4 cut(s)	245, 429, 492, 543
Bsp143I	GATC	3 cut(s)	420, 437, 561
BspACI	CCGC	6 cut(s)	5, 91, 258, 457, 461, 486
BspANI	GGCC	2 cut(s)	225, 248
BspCNI	CTCAG	3 cut(s)	150, 712, 801
BspHI	TCATGA	2 cut(s)	54, 821
BspLI	GGNNCC	3 cut(s)	280, 540, 603
BspPI	GGATC	2 cut(s)	445, 569
BspT107I	GGYRCC	2 cut(s)	278, 601
BsrBI	CCGCTC	1 cut(s)	457
BsrDI	GCAATG	1 cut(s)	318
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	2 cut(s)	243, 364
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	3 cut(s)	307, 534, 543
BssMI	GATC	3 cut(s)	420, 437, 561
BssNI	GRCGYC	2 cut(s)	279, 413
BssSI	CACGAG	1 cut(s)	472
Bst2BI	CACGAG	1 cut(s)	472
Bst4CI	ACNGT	4 cut(s)	289, 346, 382, 643
Bst6I	CTCTTC	2 cut(s)	137, 660
BstACI	GRCGYC	2 cut(s)	279, 413
BstAPI	GCANNNNNTGC	1 cut(s)	496
BstC8I	GCNNGC	2 cut(s)	459, 488
BstDEI	CTNAG	4 cut(s)	137, 404, 699, 788
BstDSI	CCRYGG	1 cut(s)	534
BstF5I	GGATG	3 cut(s)	77, 517, 655
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	281
BstKTI	GATC	3 cut(s)	423, 440, 564
BstMAI	GTCTC	2 cut(s)	392, 420
BstMBI	GATC	3 cut(s)	420, 437, 561
BstMWI	GCNNNNNNNGC	3 cut(s)	463, 483, 496
BstSLI	GKGCMC	2 cut(s)	245, 492
BstV1I	GCAGC	1 cut(s)	478
BstV2I	GAAGAC	1 cut(s)	416
BsuRI	GGCC	2 cut(s)	225, 248
BtgI	CCRYGG	1 cut(s)	534
BtsCI	GGATG	3 cut(s)	77, 517, 655
Cac8I	GCNNGC	2 cut(s)	459, 488
CciI	TCATGA	2 cut(s)	54, 821
CfoI	GCGC	1 cut(s)	281
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	2 cut(s)	223, 247
CseI	GACGC	1 cut(s)	409
CviAII	CATG	5 cut(s)	55, 268, 506, 682, 822
CviJI	RGCY	9 cut(s)	115, 141, 225, 248, 388, 427, 469, 477, 541
CviKI_1	RGCY	9 cut(s)	115, 141, 225, 248, 388, 427, 469, 477, 541
DdeI	CTNAG	4 cut(s)	137, 404, 699, 788
DinI	GGCGCC	1 cut(s)	280
DpnI	GATC	3 cut(s)	422, 439, 563
DpnII	GATC	3 cut(s)	420, 437, 561
DraIII	CACNNNGTG	1 cut(s)	496
Eam1104I	CTCTTC	2 cut(s)	137, 660
EarI	CTCTTC	2 cut(s)	137, 660
Ecl136II	GAGCTC	1 cut(s)	427
Eco24I	GRGCYC	2 cut(s)	429, 543
Eco53kI	GAGCTC	1 cut(s)	427
Eco88I	CYCGRG	4 cut(s)	308, 395, 542, 764
EcoICRI	GAGCTC	1 cut(s)	427
EcoRI	GAATTC	1 cut(s)	353
EcoT38I	GRGCYC	2 cut(s)	429, 543
EgeI	GGCGCC	1 cut(s)	280
EheI	GGCGCC	1 cut(s)	280
Esp3I	CGTCTC	2 cut(s)	392, 420
FaeI	CATG	5 cut(s)	58, 271, 509, 685, 825
FaiI	YATR	9 cut(s)	56, 269, 507, 597, 617, 683, 761, 774, 823
FaqI	GGGAC	1 cut(s)	376
FatI	CATG	5 cut(s)	54, 267, 505, 681, 821
FauI	CCCGC	2 cut(s)	450, 479
Fnu4HI	GCNGC	1 cut(s)	467
FokI	GGATG	3 cut(s)	64, 524, 662
FriOI	GRGCYC	2 cut(s)	429, 543
Fsp4HI	GCNGC	1 cut(s)	467
FspBI	CTAG	1 cut(s)	633
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	1 cut(s)	467
GsuI	CTGGAG	1 cut(s)	314
HaeII	RGCGCY	1 cut(s)	282
HaeIII	GGCC	2 cut(s)	225, 248
HapII	CCGG	1 cut(s)	204
HgaI	GACGC	1 cut(s)	409
HhaI	GCGC	1 cut(s)	281
Hin1I	GRCGYC	2 cut(s)	279, 413
Hin1II	CATG	5 cut(s)	58, 271, 509, 685, 825
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HincII	GTYRAC	2 cut(s)	328, 757
HindII	GTYRAC	2 cut(s)	328, 757
HinfI	GANTC	5 cut(s)	228, 431, 551, 715, 806
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	3 cut(s)	193, 296, 724
Hpy166II	GTNNAC	3 cut(s)	304, 328, 757
Hpy188I	TCNGA	3 cut(s)	191, 373, 420
Hpy188III	TCNNGA	6 cut(s)	18, 55, 293, 435, 766, 822
Hpy8I	GTNNAC	3 cut(s)	304, 328, 757
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	4 cut(s)	574, 700, 721, 733
HpyCH4III	ACNGT	4 cut(s)	289, 346, 382, 643
HpyCH4IV	ACGT	2 cut(s)	335, 413
HpyCH4V	TGCA	2 cut(s)	466, 499
HpyF10VI	GCNNNNNNNGC	3 cut(s)	463, 483, 496
HpyF3I	CTNAG	4 cut(s)	137, 404, 699, 788
HpySE526I	ACGT	2 cut(s)	335, 413
Hsp92I	GRCGYC	2 cut(s)	279, 413
Hsp92II	CATG	5 cut(s)	58, 271, 509, 685, 825
HspAI	GCGC	1 cut(s)	279
KasI	GGCGCC	1 cut(s)	278
Kzo9I	GATC	3 cut(s)	420, 437, 561
LmnI	GCTCC	3 cut(s)	146, 454, 538
LpnPI	CCDG	8 cut(s)	46, 217, 224, 278, 353, 377, 485, 504
Lsp1109I	GCAGC	1 cut(s)	478
LweI	GCATC	3 cut(s)	182, 216, 584
MaeI	CTAG	1 cut(s)	633
MaeII	ACGT	2 cut(s)	335, 413
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	3 cut(s)	422, 439, 563
MbiI	CCGCTC	1 cut(s)	457
MboI	GATC	3 cut(s)	420, 437, 561
MboII	GAAGA	5 cut(s)	124, 421, 677, 736, 810
MhlI	GDGCHC	4 cut(s)	245, 429, 492, 543
MluCI	AATT	4 cut(s)	353, 448, 676, 745
Mly113I	GGCGCC	1 cut(s)	279
MlyI	GAGTC	2 cut(s)	237, 815
MmeI	TCCRAC	2 cut(s)	19, 351
MroXI	GAANNNNTTC	1 cut(s)	783
MseI	TTAA	2 cut(s)	675, 744
MslI	CAYNNNNRTG	1 cut(s)	510
MspI	CCGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	3 cut(s)	463, 483, 496
NarI	GGCGCC	1 cut(s)	279
NdeII	GATC	3 cut(s)	420, 437, 561
NlaIII	CATG	5 cut(s)	58, 271, 509, 685, 825
NlaIV	GGNNCC	3 cut(s)	280, 540, 603
NmeAIII	GCCGAG	1 cut(s)	251
NmuCI	GTSAC	1 cut(s)	346
PagI	TCATGA	2 cut(s)	54, 821
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PdmI	GAANNNNTTC	1 cut(s)	783
PfeI	GAWTC	3 cut(s)	431, 551, 715
PkrI	GCNGC	1 cut(s)	468
PleI	GAGTC	2 cut(s)	236, 814
PluTI	GGCGCC	1 cut(s)	282
PpsI	GAGTC	2 cut(s)	236, 814
Psp124BI	GAGCTC	1 cut(s)	429
PspN4I	GGNNCC	3 cut(s)	280, 540, 603
PspPI	GGNCC	2 cut(s)	223, 247
RseI	CAYNNNNRTG	1 cut(s)	510
SacI	GAGCTC	1 cut(s)	429
SaqAI	TTAA	2 cut(s)	675, 744
SatI	GCNGC	1 cut(s)	467
Sau3AI	GATC	3 cut(s)	420, 437, 561
Sau96I	GGNCC	2 cut(s)	223, 247
SchI	GAGTC	2 cut(s)	237, 815
SduI	GDGCHC	4 cut(s)	245, 429, 492, 543
SfaNI	GCATC	3 cut(s)	182, 216, 584
SfoI	GGCGCC	1 cut(s)	280
SmiMI	CAYNNNNRTG	1 cut(s)	510
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
SpeI	ACTAGT	1 cut(s)	632
Sse9I	AATT	4 cut(s)	353, 448, 676, 745
SsiI	CCGC	6 cut(s)	5, 91, 258, 457, 461, 486
SspDI	GGCGCC	1 cut(s)	278
SspMI	CTAG	1 cut(s)	633
SstI	GAGCTC	1 cut(s)	429
TaaI	ACNGT	4 cut(s)	289, 346, 382, 643
TaiI	ACGT	2 cut(s)	338, 416
TaqI	TCGA	8 cut(s)	213, 264, 357, 423, 429, 578, 737, 777
TasI	AATT	4 cut(s)	353, 448, 676, 745
TfiI	GAWTC	3 cut(s)	431, 551, 715
Tru1I	TTAA	2 cut(s)	675, 744
Tru9I	TTAA	2 cut(s)	675, 744
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	1 cut(s)	466
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	4 cut(s)	71, 284, 670, 810
TspGWI	ACGGA	3 cut(s)	345, 523, 708
XapI	RAATTY	2 cut(s)	353, 448
XcmI	CCANNNNNNNNNTGG	2 cut(s)	289, 478
XmnI	GAANNNNTTC	1 cut(s)	783
XspI	CTAG	1 cut(s)	633
ZraI	GACGTC	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.