Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8217730.1

Orthogroup ID

OG0009091

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 275

Gene Structure 275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8217730.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 263 bp

atggtgccggaggaggattcgctgtggatcaaggtgaagacgacgaaggagatactcaagtatgtggtgccgaaagggtatatagctgtggatgggactagtctgactgtggtggatgtgtttgatgatgaagagtgcttcaatttcatgctggtggcttatactcagcagaaggtggtgattcctttgaagaaggttgggcagaaggtgaatttggaggttgatatactggggaaatatgtggagaggcttctcagtagtgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004746 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009987 GO:0016740 GO:0016765 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Lum_binding

Protein Analysis

88

Amino Acids

9.95

Weight (kDa)

5.04

Isoelectric Point (pI)

27.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20690
fragaria_vesca	FvH4_5g33380 FvH4_5g33380 FvH4_5g33380 FvH4_5g33380
malus_domestica	MD09G1247800.v1.1 MD17G1240700.v1.1
prunus_persica	Prupe.3G137500_v2.0.a1 Prupe.3G137500_v2.0.a1 Prupe.3G137500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0232111
rosa_laevigata	RLG00000001390
rosa_multiflora	Rmu_co8217730.1_g000001 Rmu_sc0000616.1_g000009 Rmu_sc0004618.1_g000003
rosa_roxburghii	Rroxscaffold_3G00228800
rosa_rugosa	Rorug07G0269300
rosa_samantha	Rh7AG423700 Rh7BG397800 Rh7CG444200 Rh7DG415900
rosa_wichuraiana	Rw7G035050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 67
AclWI	GGATC	1 cut(s)	35
AcsI	RAATTY	1 cut(s)	211
AgsI	TTSAA	2 cut(s)	142, 190
AhlI	ACTAGT	1 cut(s)	98
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
AlwI	GGATC	1 cut(s)	35
ApoI	RAATTY	1 cut(s)	211
AsuHPI	GGTGA	3 cut(s)	46, 190, 220
BaeI	ACNNNNGTAYC	2 cut(s)	44, 77
BanI	GGYRCC	2 cut(s)	4, 67
BbsI	GAAGAC	1 cut(s)	44
BccI	CCATC	1 cut(s)	86
BcuI	ACTAGT	1 cut(s)	98
BfaI	CTAG	1 cut(s)	99
BmiI	GGNNCC	2 cut(s)	6, 69
BmrI	ACTGGG	1 cut(s)	239
BmuI	ACTGGG	1 cut(s)	239
BpiI	GAAGAC	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	234
BseGI	GGATG	2 cut(s)	97, 121
BseMII	CTCAG	1 cut(s)	179
BseNI	ACTGG	1 cut(s)	234
BseRI	GAGGAG	1 cut(s)	26
BshNI	GGYRCC	2 cut(s)	4, 67
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	109
Bsp143I	GATC	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	178
BspLI	GGNNCC	2 cut(s)	6, 69
BspPI	GGATC	1 cut(s)	35
BspT107I	GGYRCC	2 cut(s)	4, 67
BsrI	ACTGG	1 cut(s)	234
BssMI	GATC	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	126
BstDEI	CTNAG	2 cut(s)	165, 254
BstF5I	GGATG	2 cut(s)	97, 121
BstKTI	GATC	1 cut(s)	30
BstMBI	GATC	1 cut(s)	27
BstV2I	GAAGAC	1 cut(s)	44
BtsCI	GGATG	2 cut(s)	97, 121
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	3 cut(s)	86, 158, 250
CviKI_1	RGCY	3 cut(s)	86, 158, 250
DdeI	CTNAG	2 cut(s)	165, 254
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
FaeI	CATG	1 cut(s)	151
FaiI	YATR	7 cut(s)	63, 81, 83, 149, 162, 227, 240
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	1 cut(s)	147
FokI	GGATG	2 cut(s)	104, 128
FspBI	CTAG	1 cut(s)	99
HapII	CCGG	1 cut(s)	8
Hin1II	CATG	1 cut(s)	151
HinfI	GANTC	2 cut(s)	17, 181
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	3 cut(s)	46, 190, 220
Hpy188I	TCNGA	1 cut(s)	105
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	4 cut(s)	40, 166, 187, 199
HpyCH4III	ACNGT	1 cut(s)	109
HpyF3I	CTNAG	2 cut(s)	165, 254
Hsp92II	CATG	1 cut(s)	151
Kzo9I	GATC	1 cut(s)	27
LpnPI	CCDG	3 cut(s)	21, 137, 215
MaeI	CTAG	1 cut(s)	99
MalI	GATC	1 cut(s)	29
MboI	GATC	1 cut(s)	27
MboII	GAAGA	3 cut(s)	49, 143, 202
MluCI	AATT	2 cut(s)	142, 211
MnlI	CCTC	4 cut(s)	4, 7, 211, 240
MslI	CAYNNNNRTG	1 cut(s)	152
MspI	CCGG	1 cut(s)	8
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	2 cut(s)	6, 69
PfeI	GAWTC	2 cut(s)	17, 181
PspN4I	GGNNCC	2 cut(s)	6, 69
RseI	CAYNNNNRTG	1 cut(s)	152
Sau3AI	GATC	1 cut(s)	27
SetI	ASST	6 cut(s)	36, 88, 177, 198, 210, 222
SgeI	CNNG	7 cut(s)	20, 43, 70, 111, 160, 164, 242
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
SpeI	ACTAGT	1 cut(s)	98
Sse9I	AATT	2 cut(s)	142, 211
SspMI	CTAG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	109
TasI	AATT	2 cut(s)	142, 211
TfiI	GAWTC	2 cut(s)	17, 181
TspDTI	ATGAA	2 cut(s)	136, 144
XapI	RAATTY	1 cut(s)	211
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.