Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0009091

Physical Location & Seq

Genomic Coordinates Forward (+)

44122070 .. 44124705

Gene Structure 2636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG397800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCAGTTTGTTTCTCTCTCACTTCACTCTCACCAACTCCTCAAACCTCCTCCTCTGGTCCAACAATGGCAACCCTAAACACCTTCTACACCATCTCCTCCAAAACCCTAGCCAGATTCACCTTCAACCCTCTTTCCAAACCCTCCACTCTAAACCTCTTCGCCAAACCGCCCCTCACCCATCTCCGATCTCCTCCCCGCAACACAATCCGGTCCCTCTTCACCGGAATCGTCGAGGAAATGGGCCAAGTCAAGCAGCTCGGCGCCTCCGACGGCGGCGGCTTCGACATGAGAATCGGCGCCGCCACCGTCCTCGACGGCGTCCACCTCGGCGACAGCATCGCCGTCAACGGCACCTGCCTCACCGTCACGGAATTCGACGATTCTCATTTCACCGTCGGCCTGGCGCCGGAGACGCTGCGGAAGACCTCGCTGGTGGAGCTCGAGCCGGGTTCGCTGGTGAATCTGGAGCGGGCGGTGCTGCCGACGAGCCGGATGGGCGGGCATTTCTTGCAGGGACACGTGGACGGCACCGGCGAGATAGTGTCGATGGTGCCGGAGGAGGATTCGCTGTGGATCAAGGTGAAGACGACGAAGGAGATACTCAAGTATGTGGTGCCGAAAGGGTATATAGCTGTGGATGGGACTAGTCTGACTGTGGTGGATGTGTTTGATGATGAAGAGTGCTTCAATTTCATGCTGGTGGCTTATACTCAGCAGAAGGTGGTGATTCCTTTGAAGAAGGTTGGGCAGAAGGTGAATTTGGAGGTTGATATACTGGGGAAATATGTGGAGAGGCTTCTCAGCAGTGGGTTTGTTGACTCCATCAAGTCGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004746 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009987 GO:0016740 GO:0016765 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Lum_binding

Protein Analysis

279

Amino Acids

30.21

Weight (kDa)

5.98

Isoelectric Point (pI)

35.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lum_binding	PF00677	75 - 159	2e-22	Lumazine binding domain
Lum_binding	PF00677	172 - 258	1.5e-22	Lumazine binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20690
fragaria_vesca	FvH4_5g33380 FvH4_5g33380 FvH4_5g33380 FvH4_5g33380
malus_domestica	MD09G1247800.v1.1 MD17G1240700.v1.1
prunus_persica	Prupe.3G137500_v2.0.a1 Prupe.3G137500_v2.0.a1 Prupe.3G137500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0232111
rosa_laevigata	RLG00000001390
rosa_multiflora	Rmu_co8217730.1_g000001 Rmu_sc0000616.1_g000009 Rmu_sc0004618.1_g000003
rosa_roxburghii	Rroxscaffold_3G00228800
rosa_rugosa	Rorug07G0269300
rosa_samantha	Rh7AG423700 Rh7BG397800 Rh7CG444200 Rh7DG415900
rosa_wichuraiana	Rw7G035050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	365
Acc36I	ACCTGC	1 cut(s)	365
AccB1I	GGYRCC	7 cut(s)	263, 299, 353, 406, 530, 553, 616
AccBSI	CCGCTC	1 cut(s)	472
AciI	CCGC	9 cut(s)	170, 199, 276, 279, 303, 421, 472, 476, 501
AclWI	GGATC	1 cut(s)	584
AcsI	RAATTY	2 cut(s)	374, 760
AcvI	CACGTG	1 cut(s)	523
AcyI	GRCGYC	4 cut(s)	264, 300, 321, 407
AfiI	CCNNNNNNNGG	1 cut(s)	409
AflIII	ACRYGT	1 cut(s)	520
AgsI	TTSAA	3 cut(s)	127, 691, 739
AhlI	ACTAGT	1 cut(s)	647
AjnI	CCWGG	1 cut(s)	402
AjuI	GAANNNNNNNTTGG	2 cut(s)	746, 778
AluBI	AGCT	3 cut(s)	259, 442, 635
AluI	AGCT	3 cut(s)	259, 442, 635
Alw21I	GWGCWC	1 cut(s)	444
Alw26I	GTCTC	1 cut(s)	407
AlwI	GGATC	1 cut(s)	584
Ama87I	CYCGRG	1 cut(s)	443
AoxI	GGCC	2 cut(s)	244, 400
ApeKI	GCWGC	3 cut(s)	256, 418, 481
ApoI	RAATTY	2 cut(s)	374, 760
AspLEI	GCGC	3 cut(s)	266, 302, 409
AspS9I	GGNCC	3 cut(s)	59, 213, 244
AsuC2I	CCSGG	1 cut(s)	450
AvaI	CYCGRG	1 cut(s)	443
AvaII	GGWCC	2 cut(s)	59, 213
BaeI	ACNNNNGTAYC	2 cut(s)	593, 626
BanI	GGYRCC	7 cut(s)	263, 299, 353, 406, 530, 553, 616
BanII	GRGCYC	1 cut(s)	444
BbrPI	CACGTG	1 cut(s)	523
BbsI	GAAGAC	2 cut(s)	431, 593
Bbv12I	GWGCWC	1 cut(s)	444
BbvI	GCAGC	3 cut(s)	268, 405, 468
BccI	CCATC	6 cut(s)	101, 189, 490, 544, 635, 833
BceAI	ACGGC	5 cut(s)	289, 329, 334, 367, 544
BciT130I	CCWGG	1 cut(s)	404
BcnI	CCSGG	1 cut(s)	450
BcoDI	GTCTC	1 cut(s)	407
BcuI	ACTAGT	1 cut(s)	647
BfaI	CTAG	2 cut(s)	110, 648
BfoI	RGCGCY	3 cut(s)	267, 303, 410
BfuAI	ACCTGC	1 cut(s)	365
BglI	GCCNNNNNGGC	1 cut(s)	498
BisI	GCNGC	6 cut(s)	257, 277, 280, 303, 419, 482
BlsI	GCNGC	6 cut(s)	258, 278, 281, 304, 420, 483
Bme1390I	CCNGG	2 cut(s)	404, 450
Bme18I	GGWCC	2 cut(s)	59, 213
BmeT110I	CYCGRG	1 cut(s)	443
BmgT120I	GGNCC	3 cut(s)	59, 213, 244
BmiI	GGNNCC	8 cut(s)	215, 265, 301, 355, 408, 532, 555, 618
BmrFI	CCNGG	2 cut(s)	404, 450
BmrI	ACTGGG	1 cut(s)	788
BmsI	GCATC	1 cut(s)	348
BmuI	ACTGGG	1 cut(s)	788
BpiI	GAAGAC	2 cut(s)	431, 593
BpmI	CTGGAG	1 cut(s)	488
BpuEI	CTTGAG	1 cut(s)	590
BpuMI	CCSGG	1 cut(s)	450
BsaAI	YACGTR	1 cut(s)	523
BsaHI	GRCGYC	4 cut(s)	264, 300, 321, 407
BsaJI	CCNNGG	1 cut(s)	328
BsaWI	WCCGGW	2 cut(s)	210, 224
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	1 cut(s)	409
Bse118I	RCCGGY	1 cut(s)	533
Bse1I	ACTGG	1 cut(s)	783
BseBI	CCWGG	1 cut(s)	404
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	3 cut(s)	501, 646, 670
BseLI	CCNNNNNNNGG	1 cut(s)	409
BseMII	CTCAG	2 cut(s)	728, 817
BseNI	ACTGG	1 cut(s)	783
BseRI	GAGGAG	6 cut(s)	30, 40, 43, 88, 183, 575
BseXI	GCAGC	3 cut(s)	268, 405, 468
BshFI	GGCC	2 cut(s)	246, 402
BshNI	GGYRCC	7 cut(s)	263, 299, 353, 406, 530, 553, 616
BsiHKAI	GWGCWC	1 cut(s)	444
BsiHKCI	CYCGRG	1 cut(s)	443
BsiSI	CCGG	7 cut(s)	211, 225, 410, 449, 493, 534, 557
BslFI	GGGAC	3 cut(s)	199, 531, 658
BslI	CCNNNNNNNGG	1 cut(s)	409
BsmAI	GTCTC	1 cut(s)	407
BsmBI	CGTCTC	1 cut(s)	407
BsmFI	GGGAC	3 cut(s)	199, 531, 658
BsnI	GGCC	2 cut(s)	246, 402
BsoBI	CYCGRG	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp143I	GATC	2 cut(s)	188, 576
BspACI	CCGC	9 cut(s)	170, 199, 276, 279, 303, 421, 472, 476, 501
BspANI	GGCC	2 cut(s)	246, 402
BspCNI	CTCAG	2 cut(s)	727, 816
BspLI	GGNNCC	8 cut(s)	215, 265, 301, 355, 408, 532, 555, 618
BspMI	ACCTGC	1 cut(s)	365
BspPI	GGATC	1 cut(s)	584
BspT107I	GGYRCC	7 cut(s)	263, 299, 353, 406, 530, 553, 616
BsrBI	CCGCTC	1 cut(s)	472
BsrFI	RCCGGY	1 cut(s)	533
BsrI	ACTGG	1 cut(s)	783
BssAI	RCCGGY	1 cut(s)	533
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	2 cut(s)	188, 576
BssNI	GRCGYC	4 cut(s)	264, 300, 321, 407
Bst2UI	CCWGG	1 cut(s)	404
Bst4CI	ACNGT	4 cut(s)	310, 367, 397, 658
Bst6I	CTCTTC	3 cut(s)	164, 224, 675
BstACI	GRCGYC	4 cut(s)	264, 300, 321, 407
BstAPI	GCANNNNNTGC	1 cut(s)	511
BstBAI	YACGTR	1 cut(s)	523
BstC8I	GCNNGC	2 cut(s)	474, 503
BstDEI	CTNAG	2 cut(s)	714, 803
BstF5I	GGATG	3 cut(s)	501, 646, 670
BstH2I	RGCGCY	3 cut(s)	267, 303, 410
BstHHI	GCGC	3 cut(s)	266, 302, 409
BstKTI	GATC	2 cut(s)	191, 579
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	2 cut(s)	188, 576
BstMWI	GCNNNNNNNGC	6 cut(s)	415, 439, 454, 478, 498, 511
BstNI	CCWGG	1 cut(s)	404
BstSCI	CCNGG	2 cut(s)	402, 448
BstV1I	GCAGC	3 cut(s)	268, 405, 468
BstV2I	GAAGAC	2 cut(s)	431, 593
BsuRI	GGCC	2 cut(s)	246, 402
BtgZI	GCGATG	1 cut(s)	325
BtsCI	GGATG	3 cut(s)	501, 646, 670
BtsI	GCAGTG	1 cut(s)	814
BtsIMutI	CAGTG	1 cut(s)	814
BveI	ACCTGC	1 cut(s)	365
Cac8I	GCNNGC	2 cut(s)	474, 503
CfoI	GCGC	3 cut(s)	266, 302, 409
Cfr10I	RCCGGY	1 cut(s)	533
Cfr13I	GGNCC	3 cut(s)	59, 213, 244
CseI	GACGC	2 cut(s)	310, 424
CviAII	CATG	2 cut(s)	289, 697
DdeI	CTNAG	2 cut(s)	714, 803
DinI	GGCGCC	3 cut(s)	265, 301, 408
DpnI	GATC	2 cut(s)	190, 578
DpnII	GATC	2 cut(s)	188, 576
Eam1104I	CTCTTC	3 cut(s)	164, 224, 675
EarI	CTCTTC	3 cut(s)	164, 224, 675
Ecl136II	GAGCTC	1 cut(s)	442
Eco24I	GRGCYC	1 cut(s)	444
Eco47I	GGWCC	2 cut(s)	59, 213
Eco53kI	GAGCTC	1 cut(s)	442
Eco72I	CACGTG	1 cut(s)	523
Eco88I	CYCGRG	1 cut(s)	443
EcoICRI	GAGCTC	1 cut(s)	442
EcoRI	GAATTC	1 cut(s)	374
EcoRII	CCWGG	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	444
EgeI	GGCGCC	3 cut(s)	265, 301, 408
EheI	GGCGCC	3 cut(s)	265, 301, 408
Esp3I	CGTCTC	1 cut(s)	407
FaeI	CATG	2 cut(s)	292, 700
FaiI	YATR	8 cut(s)	290, 612, 630, 632, 698, 711, 776, 789
FaqI	GGGAC	3 cut(s)	199, 531, 658
FatI	CATG	2 cut(s)	288, 696
FauI	CCCGC	3 cut(s)	206, 465, 494
Fnu4HI	GCNGC	6 cut(s)	257, 277, 280, 303, 419, 482
FokI	GGATG	3 cut(s)	508, 653, 677
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	6 cut(s)	257, 277, 280, 303, 419, 482
FspBI	CTAG	2 cut(s)	110, 648
GlaI	GCGC	3 cut(s)	265, 301, 408
GluI	GCNGC	6 cut(s)	257, 277, 280, 303, 419, 482
GsuI	CTGGAG	1 cut(s)	488
HaeII	RGCGCY	3 cut(s)	267, 303, 410
HaeIII	GGCC	2 cut(s)	246, 402
HapII	CCGG	7 cut(s)	211, 225, 410, 449, 493, 534, 557
HgaI	GACGC	2 cut(s)	310, 424
HhaI	GCGC	3 cut(s)	266, 302, 409
Hin1I	GRCGYC	4 cut(s)	264, 300, 321, 407
Hin1II	CATG	2 cut(s)	292, 700
Hin6I	GCGC	3 cut(s)	264, 300, 407
HinP1I	GCGC	3 cut(s)	264, 300, 407
HincII	GTYRAC	2 cut(s)	349, 820
HindII	GTYRAC	2 cut(s)	349, 820
HinfI	GANTC	8 cut(s)	117, 228, 294, 383, 463, 566, 730, 821
HpaII	CCGG	7 cut(s)	211, 225, 410, 449, 493, 534, 557
Hpy166II	GTNNAC	4 cut(s)	325, 349, 526, 820
Hpy188I	TCNGA	3 cut(s)	188, 271, 654
Hpy188III	TCNNGA	1 cut(s)	467
Hpy8I	GTNNAC	4 cut(s)	325, 349, 526, 820
Hpy99I	CGWCG	7 cut(s)	236, 275, 320, 383, 401, 490, 595
HpyAV	CCTTC	6 cut(s)	94, 133, 589, 715, 736, 748
HpyCH4III	ACNGT	4 cut(s)	310, 367, 397, 658
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	1 cut(s)	514
HpyF10VI	GCNNNNNNNGC	6 cut(s)	415, 439, 454, 478, 498, 511
HpyF3I	CTNAG	2 cut(s)	714, 803
HpySE526I	ACGT	1 cut(s)	522
Hsp92I	GRCGYC	4 cut(s)	264, 300, 321, 407
Hsp92II	CATG	2 cut(s)	292, 700
HspAI	GCGC	3 cut(s)	264, 300, 407
KasI	GGCGCC	3 cut(s)	263, 299, 406
Kzo9I	GATC	2 cut(s)	188, 576
LmnI	GCTCC	2 cut(s)	439, 469
Lsp1109I	GCAGC	3 cut(s)	268, 405, 468
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	2 cut(s)	110, 648
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	2 cut(s)	190, 578
MbiI	CCGCTC	1 cut(s)	472
MboI	GATC	2 cut(s)	188, 576
MboII	GAAGA	6 cut(s)	151, 211, 436, 598, 692, 751
MhlI	GDGCHC	1 cut(s)	444
MluCI	AATT	3 cut(s)	374, 691, 760
Mly113I	GGCGCC	3 cut(s)	264, 300, 407
MlyI	GAGTC	1 cut(s)	815
MmeI	TCCRAC	2 cut(s)	86, 294
MslI	CAYNNNNRTG	1 cut(s)	701
MspI	CCGG	7 cut(s)	211, 225, 410, 449, 493, 534, 557
MspR9I	CCNGG	2 cut(s)	404, 450
MvaI	CCWGG	1 cut(s)	404
MwoI	GCNNNNNNNGC	6 cut(s)	415, 439, 454, 478, 498, 511
NarI	GGCGCC	3 cut(s)	264, 300, 407
NciI	CCSGG	1 cut(s)	450
NdeII	GATC	2 cut(s)	188, 576
NlaIII	CATG	2 cut(s)	292, 700
NlaIV	GGNNCC	8 cut(s)	215, 265, 301, 355, 408, 532, 555, 618
NmeAIII	GCCGAG	2 cut(s)	240, 309
NmuCI	GTSAC	1 cut(s)	367
PaeR7I	CTCGAG	1 cut(s)	443
PaqCI	CACCTGC	1 cut(s)	365
PcsI	WCGNNNNNNNCGW	2 cut(s)	267, 534
PfeI	GAWTC	7 cut(s)	117, 228, 294, 383, 463, 566, 730
PflFI	GACNNNGTC	1 cut(s)	320
PkrI	GCNGC	6 cut(s)	258, 278, 281, 304, 420, 483
PleI	GAGTC	1 cut(s)	815
PluTI	GGCGCC	3 cut(s)	267, 303, 410
PmaCI	CACGTG	1 cut(s)	523
PmlI	CACGTG	1 cut(s)	523
PpsI	GAGTC	1 cut(s)	815
Ppu21I	YACGTR	1 cut(s)	523
Psp124BI	GAGCTC	1 cut(s)	444
Psp6I	CCWGG	1 cut(s)	402
PspCI	CACGTG	1 cut(s)	523
PspGI	CCWGG	1 cut(s)	402
PspN4I	GGNNCC	8 cut(s)	215, 265, 301, 355, 408, 532, 555, 618
PspPI	GGNCC	3 cut(s)	59, 213, 244
PspXI	VCTCGAGB	1 cut(s)	443
PsyI	GACNNNGTC	1 cut(s)	320
RseI	CAYNNNNRTG	1 cut(s)	701
SacI	GAGCTC	1 cut(s)	444
SatI	GCNGC	6 cut(s)	257, 277, 280, 303, 419, 482
Sau3AI	GATC	2 cut(s)	188, 576
Sau96I	GGNCC	3 cut(s)	59, 213, 244
SchI	GAGTC	1 cut(s)	815
ScrFI	CCNGG	2 cut(s)	404, 450
SduI	GDGCHC	1 cut(s)	444
SfaNI	GCATC	1 cut(s)	348
SfoI	GGCGCC	3 cut(s)	265, 301, 408
Sfr274I	CTCGAG	1 cut(s)	443
SgrAI	CRCCGGYG	1 cut(s)	533
SinI	GGWCC	2 cut(s)	59, 213
SlaI	CTCGAG	1 cut(s)	443
SmiMI	CAYNNNNRTG	1 cut(s)	701
SmlI	CTYRAG	2 cut(s)	443, 605
SmoI	CTYRAG	2 cut(s)	443, 605
SpeI	ACTAGT	1 cut(s)	647
Sse9I	AATT	3 cut(s)	374, 691, 760
SsiI	CCGC	9 cut(s)	170, 199, 276, 279, 303, 421, 472, 476, 501
SspDI	GGCGCC	3 cut(s)	263, 299, 406
SspMI	CTAG	2 cut(s)	110, 648
SstI	GAGCTC	1 cut(s)	444
StyD4I	CCNGG	2 cut(s)	402, 448
TaaI	ACNGT	4 cut(s)	310, 367, 397, 658
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	7 cut(s)	234, 285, 315, 378, 444, 548, 833
TasI	AATT	3 cut(s)	374, 691, 760
TauI	GCSGC	3 cut(s)	279, 282, 305
TfiI	GAWTC	7 cut(s)	117, 228, 294, 383, 463, 566, 730
TscAI	CASTG	1 cut(s)	814
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	3 cut(s)	256, 418, 481
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	2 cut(s)	685, 693
TspGWI	ACGGA	1 cut(s)	386
TspRI	CASTG	1 cut(s)	814
Tth111I	GACNNNGTC	1 cut(s)	320
VpaK11BI	GGWCC	2 cut(s)	59, 213
XapI	RAATTY	2 cut(s)	374, 760
XhoI	CTCGAG	1 cut(s)	443
XspI	CTAG	2 cut(s)	110, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.