Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009091

Physical Location & Seq

Genomic Coordinates Forward (+)

24121264 .. 24124063

Gene Structure 2800 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g33380.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCAGTTTCCTTCTCCCTCACTTCACTCTCCTCAAATCCTCCCAAACCCTCCTCTCCTCCAACAATGGCAACCCTAGCCTCCTTCTGCTCCATCTCCTCCAAAACCCTACCCAGATTCACCTTCAACCCCCTCTCCAAACCCTCCGCCCTAACCCTCCTCTCCAAGCCGCCCCTCACCCACCTCCGATCCCCTCCCCGCAACACAATCCGTTCTCTCTTCACCGGAATCGTCGAGGAGATGGGCCACGTCAAGCACCTCGGCCCCTCCTCCTCCGACTCCGGCGGTGGATTCGACATGAGAATCGCCGCCTCCACCGTCCTCGACGGCGTCCGCCTCGGCGACAGCATCGCCGTCAACGGCACCTGCCTGACGGTGACGGAGTTCGACGCGTCTCACTTCACCGTCGGCCTGGCGCCGGAGACGCTGCGGAAGACCTCGCTGGTGGAGCTGGAGCCTGGCTCGCCGGTGAACCTGGAGCGGGCGGTGCTGCCGACGAGCCGGATGGGCGGGCATTTCTTGCAGGGACACGTGGACGGCACCGGCGAGATAGTGGCGATGGTGCCGGAGGAGGATTCGCTGTGGATCAAGGTGAAGACGAGGAAGGAGATACTCAAGTATGTTGTGCCGAAAGGGTACATAGCTGTGGATGGGACTAGCTTGACTGTGGTGGATGTGTTTGATGATGAGGACTGCTTCAATTTCATGCTGGTGGCTTATACGCAGCAGAAGGTGGTCATTCCGCTCAAGAAGGTTGGCCAGAAGGTGAATTTGGAGGTTGATATACTCGGCAAGTATGTGGAGAGGCTTCTCACTAGCGGCTTTCTCGACTCCATCAAGTCCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004746 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009987 GO:0016740 GO:0016765 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Lum_binding

Protein Analysis

283

Amino Acids

30.42

Weight (kDa)

7.73

Isoelectric Point (pI)

37.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lum_binding	PF00677	75 - 162	3.9e-22	Lumazine binding domain
Lum_binding	PF00677	175 - 261	1.4e-22	Lumazine binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20690
fragaria_vesca	FvH4_5g33380 FvH4_5g33380 FvH4_5g33380 FvH4_5g33380
malus_domestica	MD09G1247800.v1.1 MD17G1240700.v1.1
prunus_persica	Prupe.3G137500_v2.0.a1 Prupe.3G137500_v2.0.a1 Prupe.3G137500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0232111
rosa_laevigata	RLG00000001390
rosa_multiflora	Rmu_co8217730.1_g000001 Rmu_sc0000616.1_g000009 Rmu_sc0004618.1_g000003
rosa_roxburghii	Rroxscaffold_3G00228800
rosa_rugosa	Rorug07G0269300
rosa_samantha	Rh7AG423700 Rh7BG397800 Rh7CG444200 Rh7DG415900
rosa_wichuraiana	Rw7G035050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	374
Acc36I	ACCTGC	1 cut(s)	374
AccB1I	GGYRCC	4 cut(s)	362, 415, 539, 562
AccBSI	CCGCTC	2 cut(s)	481, 745
AccII	CGCG	1 cut(s)	392
AclWI	GGATC	2 cut(s)	183, 593
AcoI	YGGCCR	1 cut(s)	757
AcsI	RAATTY	1 cut(s)	769
AcvI	CACGTG	1 cut(s)	532
AcyI	GRCGYC	2 cut(s)	330, 416
AfaI	GTAC	1 cut(s)	638
AfiI	CCNNNNNNNGG	2 cut(s)	418, 481
AflIII	ACRYGT	2 cut(s)	390, 529
AgsI	TTSAA	2 cut(s)	127, 700
AjiI	CACGTC	1 cut(s)	250
AjnI	CCWGG	3 cut(s)	411, 457, 474
AjuI	GAANNNNNNNTTGG	2 cut(s)	755, 787
AluBI	AGCT	3 cut(s)	451, 644, 660
AluI	AGCT	3 cut(s)	451, 644, 660
Alw26I	GTCTC	2 cut(s)	399, 416
AlwI	GGATC	2 cut(s)	183, 593
AoxI	GGCC	4 cut(s)	244, 262, 409, 757
ApeKI	GCWGC	3 cut(s)	427, 490, 724
ApoI	RAATTY	1 cut(s)	769
AspLEI	GCGC	1 cut(s)	418
AspS9I	GGNCC	2 cut(s)	244, 263
AsuHPI	GGTGA	8 cut(s)	112, 169, 214, 388, 394, 481, 604, 778
BaeI	ACNNNNGTAYC	2 cut(s)	602, 635
BalI	TGGCCA	1 cut(s)	759
BanI	GGYRCC	4 cut(s)	362, 415, 539, 562
BbrPI	CACGTG	1 cut(s)	532
BbsI	GAAGAC	2 cut(s)	440, 602
BbvI	GCAGC	3 cut(s)	414, 477, 736
BccI	CCATC	6 cut(s)	101, 235, 499, 553, 644, 842
BceAI	ACGGC	4 cut(s)	338, 343, 376, 553
BciT130I	CCWGG	3 cut(s)	413, 459, 476
BcoDI	GTCTC	2 cut(s)	399, 416
BfaI	CTAG	3 cut(s)	77, 657, 816
BfoI	RGCGCY	1 cut(s)	419
BfuAI	ACCTGC	1 cut(s)	374
BglI	GCCNNNNNGGC	1 cut(s)	507
BisI	GCNGC	6 cut(s)	170, 309, 428, 491, 725, 820
BlsI	GCNGC	6 cut(s)	171, 310, 429, 492, 726, 821
Bme1390I	CCNGG	3 cut(s)	413, 459, 476
BmgBI	CACGTC	1 cut(s)	250
BmgT120I	GGNCC	2 cut(s)	244, 263
BmiI	GGNNCC	6 cut(s)	265, 364, 417, 456, 541, 564
BmrFI	CCNGG	3 cut(s)	413, 459, 476
BmsI	GCATC	1 cut(s)	357
BpiI	GAAGAC	2 cut(s)	440, 602
BplI	GAGNNNNNCTC	2 cut(s)	446, 478
BpmI	CTGGAG	2 cut(s)	473, 497
BpuEI	CTTGAG	2 cut(s)	599, 731
BsaAI	YACGTR	1 cut(s)	532
BsaHI	GRCGYC	2 cut(s)	330, 416
BsaJI	CCNNGG	2 cut(s)	259, 337
BsaWI	WCCGGW	1 cut(s)	224
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	2 cut(s)	418, 481
Bse118I	RCCGGY	2 cut(s)	466, 542
BseBI	CCWGG	3 cut(s)	413, 459, 476
BseDI	CCNNGG	2 cut(s)	259, 337
BseGI	GGATG	3 cut(s)	510, 655, 679
BseLI	CCNNNNNNNGG	2 cut(s)	418, 481
BseRI	GAGGAG	9 cut(s)	22, 43, 48, 88, 149, 251, 259, 262, 584
BseXI	GCAGC	3 cut(s)	414, 477, 736
Bsh1236I	CGCG	1 cut(s)	392
BshFI	GGCC	4 cut(s)	246, 264, 411, 759
BshNI	GGYRCC	4 cut(s)	362, 415, 539, 562
BsiSI	CCGG	7 cut(s)	225, 282, 419, 467, 502, 543, 566
BslFI	GGGAC	2 cut(s)	540, 667
BslI	CCNNNNNNNGG	2 cut(s)	418, 481
BsmAI	GTCTC	2 cut(s)	399, 416
BsmBI	CGTCTC	2 cut(s)	399, 416
BsmFI	GGGAC	2 cut(s)	540, 667
BsnI	GGCC	4 cut(s)	246, 264, 411, 759
Bsp143I	GATC	2 cut(s)	188, 585
BspANI	GGCC	4 cut(s)	246, 264, 411, 759
BspFNI	CGCG	1 cut(s)	392
BspLI	GGNNCC	6 cut(s)	265, 364, 417, 456, 541, 564
BspMI	ACCTGC	1 cut(s)	374
BspPI	GGATC	2 cut(s)	183, 593
BspT107I	GGYRCC	4 cut(s)	362, 415, 539, 562
BsrBI	CCGCTC	2 cut(s)	481, 745
BsrFI	RCCGGY	2 cut(s)	466, 542
BssAI	RCCGGY	2 cut(s)	466, 542
BssECI	CCNNGG	2 cut(s)	259, 337
BssMI	GATC	2 cut(s)	188, 585
BssNI	GRCGYC	2 cut(s)	330, 416
Bst2UI	CCWGG	3 cut(s)	413, 459, 476
Bst4CI	ACNGT	4 cut(s)	319, 376, 406, 667
Bst6I	CTCTTC	1 cut(s)	224
BstACI	GRCGYC	2 cut(s)	330, 416
BstAPI	GCANNNNNTGC	1 cut(s)	520
BstBAI	YACGTR	1 cut(s)	532
BstC8I	GCNNGC	3 cut(s)	464, 483, 512
BstF5I	GGATG	3 cut(s)	510, 655, 679
BstFNI	CGCG	1 cut(s)	392
BstH2I	RGCGCY	1 cut(s)	419
BstHHI	GCGC	1 cut(s)	418
BstKTI	GATC	2 cut(s)	191, 588
BstMAI	GTCTC	2 cut(s)	399, 416
BstMBI	GATC	2 cut(s)	188, 585
BstMWI	GCNNNNNNNGC	7 cut(s)	77, 424, 448, 463, 487, 507, 520
BstNI	CCWGG	3 cut(s)	413, 459, 476
BstSCI	CCNGG	3 cut(s)	411, 457, 474
BstUI	CGCG	1 cut(s)	392
BstV1I	GCAGC	3 cut(s)	414, 477, 736
BstV2I	GAAGAC	2 cut(s)	440, 602
BsuRI	GGCC	4 cut(s)	246, 264, 411, 759
BtgZI	GCGATG	2 cut(s)	334, 572
BtrI	CACGTC	1 cut(s)	250
BtsCI	GGATG	3 cut(s)	510, 655, 679
BveI	ACCTGC	1 cut(s)	374
Cac8I	GCNNGC	3 cut(s)	464, 483, 512
CfoI	GCGC	1 cut(s)	418
Cfr10I	RCCGGY	2 cut(s)	466, 542
Cfr13I	GGNCC	2 cut(s)	244, 263
CseI	GACGC	4 cut(s)	319, 381, 398, 433
Csp6I	GTAC	1 cut(s)	637
CviAII	CATG	2 cut(s)	298, 706
CviQI	GTAC	1 cut(s)	637
DinI	GGCGCC	1 cut(s)	417
DpnI	GATC	2 cut(s)	190, 587
DpnII	GATC	2 cut(s)	188, 585
EaeI	YGGCCR	1 cut(s)	757
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
EciI	GGCGGA	2 cut(s)	136, 323
Eco72I	CACGTG	1 cut(s)	532
EcoRII	CCWGG	3 cut(s)	411, 457, 474
EgeI	GGCGCC	1 cut(s)	417
EheI	GGCGCC	1 cut(s)	417
Esp3I	CGTCTC	2 cut(s)	399, 416
FaeI	CATG	2 cut(s)	301, 709
FaiI	YATR	7 cut(s)	299, 621, 641, 707, 720, 785, 798
FaqI	GGGAC	2 cut(s)	540, 667
FatI	CATG	2 cut(s)	297, 705
FauI	CCCGC	3 cut(s)	206, 474, 503
Fnu4HI	GCNGC	6 cut(s)	170, 309, 428, 491, 725, 820
FokI	GGATG	3 cut(s)	517, 662, 686
Fsp4HI	GCNGC	6 cut(s)	170, 309, 428, 491, 725, 820
FspBI	CTAG	3 cut(s)	77, 657, 816
GlaI	GCGC	1 cut(s)	417
GluI	GCNGC	6 cut(s)	170, 309, 428, 491, 725, 820
GsuI	CTGGAG	2 cut(s)	473, 497
HaeII	RGCGCY	1 cut(s)	419
HaeIII	GGCC	4 cut(s)	246, 264, 411, 759
HapII	CCGG	7 cut(s)	225, 282, 419, 467, 502, 543, 566
HgaI	GACGC	4 cut(s)	319, 381, 398, 433
HhaI	GCGC	1 cut(s)	418
Hin1I	GRCGYC	2 cut(s)	330, 416
Hin1II	CATG	2 cut(s)	301, 709
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	7 cut(s)	117, 228, 278, 291, 303, 575, 830
HpaII	CCGG	7 cut(s)	225, 282, 419, 467, 502, 543, 566
HphI	GGTGA	8 cut(s)	112, 169, 214, 388, 394, 481, 604, 778
Hpy166II	GTNNAC	3 cut(s)	358, 472, 535
Hpy188I	TCNGA	2 cut(s)	188, 277
Hpy188III	TCNNGA	2 cut(s)	748, 827
Hpy8I	GTNNAC	3 cut(s)	358, 472, 535
Hpy99I	CGWCG	5 cut(s)	236, 329, 392, 410, 499
HpyAV	CCTTC	7 cut(s)	22, 94, 133, 598, 724, 745, 757
HpyCH4III	ACNGT	4 cut(s)	319, 376, 406, 667
HpyCH4IV	ACGT	2 cut(s)	249, 531
HpyCH4V	TGCA	1 cut(s)	523
HpyF10VI	GCNNNNNNNGC	7 cut(s)	77, 424, 448, 463, 487, 507, 520
HpySE526I	ACGT	2 cut(s)	249, 531
Hsp92I	GRCGYC	2 cut(s)	330, 416
Hsp92II	CATG	2 cut(s)	301, 709
HspAI	GCGC	1 cut(s)	416
KasI	GGCGCC	1 cut(s)	415
Kzo9I	GATC	2 cut(s)	188, 585
LmnI	GCTCC	4 cut(s)	95, 448, 454, 478
Lsp1109I	GCAGC	3 cut(s)	414, 477, 736
LweI	GCATC	1 cut(s)	357
MaeI	CTAG	3 cut(s)	77, 657, 816
MaeII	ACGT	2 cut(s)	249, 531
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	2 cut(s)	190, 587
MbiI	CCGCTC	2 cut(s)	481, 745
MboI	GATC	2 cut(s)	188, 585
MboII	GAAGA	3 cut(s)	211, 445, 607
MlsI	TGGCCA	1 cut(s)	759
MluCI	AATT	2 cut(s)	700, 769
MluI	ACGCGT	1 cut(s)	390
MluNI	TGGCCA	1 cut(s)	759
Mly113I	GGCGCC	1 cut(s)	416
MlyI	GAGTC	2 cut(s)	272, 824
MmeI	TCCRAC	2 cut(s)	86, 300
Mox20I	TGGCCA	1 cut(s)	759
MscI	TGGCCA	1 cut(s)	759
MslI	CAYNNNNRTG	2 cut(s)	644, 710
Msp20I	TGGCCA	1 cut(s)	759
MspI	CCGG	7 cut(s)	225, 282, 419, 467, 502, 543, 566
MspR9I	CCNGG	3 cut(s)	413, 459, 476
MvaI	CCWGG	3 cut(s)	413, 459, 476
MvnI	CGCG	1 cut(s)	392
MwoI	GCNNNNNNNGC	7 cut(s)	77, 424, 448, 463, 487, 507, 520
NarI	GGCGCC	1 cut(s)	416
NdeII	GATC	2 cut(s)	188, 585
NlaIII	CATG	2 cut(s)	301, 709
NlaIV	GGNNCC	6 cut(s)	265, 364, 417, 456, 541, 564
NmeAIII	GCCGAG	3 cut(s)	240, 318, 768
NmuCI	GTSAC	1 cut(s)	376
PaqCI	CACCTGC	1 cut(s)	374
PcsI	WCGNNNNNNNCGW	1 cut(s)	543
PfeI	GAWTC	5 cut(s)	117, 228, 291, 303, 575
PflFI	GACNNNGTC	1 cut(s)	329
PkrI	GCNGC	6 cut(s)	171, 310, 429, 492, 726, 821
PleI	GAGTC	2 cut(s)	272, 824
PluTI	GGCGCC	1 cut(s)	419
PmaCI	CACGTG	1 cut(s)	532
PmlI	CACGTG	1 cut(s)	532
PpsI	GAGTC	2 cut(s)	272, 824
Ppu21I	YACGTR	1 cut(s)	532
Psp6I	CCWGG	3 cut(s)	411, 457, 474
PspCI	CACGTG	1 cut(s)	532
PspGI	CCWGG	3 cut(s)	411, 457, 474
PspN4I	GGNNCC	6 cut(s)	265, 364, 417, 456, 541, 564
PspPI	GGNCC	2 cut(s)	244, 263
PsyI	GACNNNGTC	1 cut(s)	329
RsaI	GTAC	1 cut(s)	638
RsaNI	GTAC	1 cut(s)	637
RseI	CAYNNNNRTG	2 cut(s)	644, 710
SatI	GCNGC	6 cut(s)	170, 309, 428, 491, 725, 820
Sau3AI	GATC	2 cut(s)	188, 585
Sau96I	GGNCC	2 cut(s)	244, 263
SchI	GAGTC	2 cut(s)	272, 824
ScrFI	CCNGG	3 cut(s)	413, 459, 476
SfaNI	GCATC	1 cut(s)	357
SfoI	GGCGCC	1 cut(s)	417
SgrAI	CRCCGGYG	2 cut(s)	466, 542
SmiMI	CAYNNNNRTG	2 cut(s)	644, 710
SmlI	CTYRAG	2 cut(s)	614, 746
SmoI	CTYRAG	2 cut(s)	614, 746
Sse9I	AATT	2 cut(s)	700, 769
SspDI	GGCGCC	1 cut(s)	415
SspMI	CTAG	3 cut(s)	77, 657, 816
StyD4I	CCNGG	3 cut(s)	411, 457, 474
TaaI	ACNGT	4 cut(s)	319, 376, 406, 667
TaiI	ACGT	2 cut(s)	252, 534
TaqI	TCGA	5 cut(s)	234, 294, 324, 387, 828
TasI	AATT	2 cut(s)	700, 769
TauI	GCSGC	3 cut(s)	172, 311, 822
TfiI	GAWTC	5 cut(s)	117, 228, 291, 303, 575
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	3 cut(s)	427, 490, 724
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	1 cut(s)	694
TspGWI	ACGGA	2 cut(s)	200, 395
Tth111I	GACNNNGTC	1 cut(s)	329
XapI	RAATTY	1 cut(s)	769
XspI	CTAG	3 cut(s)	77, 657, 816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.