Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0009091

Physical Location & Seq

Genomic Coordinates Forward (+)

52192822 .. 52195029

Gene Structure 2208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G035050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCAGTTTGTTTCTCTCTCACTTCACTCTCAACAACTCCTCAAACTGGTCCAACAATGGCAACCCTAAACACCTTCTACACCATCTCCTCCAAAACCCTAGCCAGATTCACCTTCAACCCCCTCTCCAAACCCTCCGCTCTAAACCTCTTCGCCAAACCGCCCCTCACGCATCTCCGATCTCCTCCCCGCAACACAATCCGGTGCCTCTTCACCGGAATCGTCGAGGAAATGGGCCGCGTCAAGCAGCTCGGTGCCTCCGACAGCGGCGGCTTCGACATGAGAATCGGCGCCGCCACTGTCCTCGACGGCGTCCACCTCGGCGACAGCATCGCCGTCAACGGCACCTGCCTCACCGTCACGGAATTCGACGCGTCTCATTTCACCGTCGGCCTGGCGCCGGAGACGCTGCGGAAGACCTCGCTGGTGGAGCTCGAGCCGGGTTCGCTGGTGAATCTGGAGCGGGCGGTGCTGCCGACGAGCCGGATGGGCGGGCATTTCTTGCAGGGACATGTGGACGGCACCGGCGAGATAGTGTCGATGGTGCCGGAGGAGGATTCGCTGTGGATCAAGGTGAAGACGACGAAGGAGATACTCAGGTATGTGGTGCCGAAAGGGTATATAGCTGTGGATGGGACTAGTCTGACTGTGGTGGATGTGTTTGATGATGAAGAGTGCTTCAATTTCATGCTGGTGGCTTATACTCAGCAGAAGGTGGTGATTCCTTTGAAGAAGGTTGGGCAGAAGGTGAATTTGGAGGTTGATATACTGGGGAAATATGTGGAGAGGCTTCTCAGTAGTGGGTTTGTTGACTCAATCAAGTCGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004746 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009987 GO:0016740 GO:0016765 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Lum_binding

Protein Analysis

276

Amino Acids

29.98

Weight (kDa)

6.53

Isoelectric Point (pI)

32.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lum_binding	PF00677	72 - 156	2e-22	Lumazine binding domain
Lum_binding	PF00677	169 - 255	1.5e-22	Lumazine binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20690
fragaria_vesca	FvH4_5g33380 FvH4_5g33380 FvH4_5g33380 FvH4_5g33380
malus_domestica	MD09G1247800.v1.1 MD17G1240700.v1.1
prunus_persica	Prupe.3G137500_v2.0.a1 Prupe.3G137500_v2.0.a1 Prupe.3G137500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0232111
rosa_laevigata	RLG00000001390
rosa_multiflora	Rmu_co8217730.1_g000001 Rmu_sc0000616.1_g000009 Rmu_sc0004618.1_g000003
rosa_roxburghii	Rroxscaffold_3G00228800
rosa_rugosa	Rorug07G0269300
rosa_samantha	Rh7AG423700 Rh7BG397800 Rh7CG444200 Rh7DG415900
rosa_wichuraiana	Rw7G035050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	356
Acc36I	ACCTGC	1 cut(s)	356
AccB1I	GGYRCC	8 cut(s)	204, 254, 290, 344, 397, 521, 544, 607
AccBSI	CCGCTC	2 cut(s)	140, 463
AccII	CGCG	2 cut(s)	240, 374
AclWI	GGATC	1 cut(s)	575
AcsI	RAATTY	2 cut(s)	365, 751
AcyI	GRCGYC	3 cut(s)	291, 312, 398
AfiI	CCNNNNNNNGG	2 cut(s)	47, 400
AflIII	ACRYGT	2 cut(s)	372, 511
AgsI	TTSAA	3 cut(s)	118, 682, 730
AhlI	ACTAGT	1 cut(s)	638
AjnI	CCWGG	1 cut(s)	393
AjuI	GAANNNNNNNTTGG	2 cut(s)	737, 769
AluBI	AGCT	3 cut(s)	250, 433, 626
AluI	AGCT	3 cut(s)	250, 433, 626
Alw21I	GWGCWC	1 cut(s)	435
Alw26I	GTCTC	2 cut(s)	381, 398
AlwI	GGATC	1 cut(s)	575
Ama87I	CYCGRG	1 cut(s)	434
AoxI	GGCC	2 cut(s)	235, 391
ApeKI	GCWGC	3 cut(s)	247, 409, 472
ApoI	RAATTY	2 cut(s)	365, 751
AspLEI	GCGC	2 cut(s)	293, 400
AspS9I	GGNCC	2 cut(s)	50, 235
AsuC2I	CCSGG	1 cut(s)	441
AsuHPI	GGTGA	8 cut(s)	103, 205, 346, 376, 463, 586, 730, 760
AvaI	CYCGRG	1 cut(s)	434
AvaII	GGWCC	1 cut(s)	50
BaeI	ACNNNNGTAYC	2 cut(s)	584, 617
BanI	GGYRCC	8 cut(s)	204, 254, 290, 344, 397, 521, 544, 607
BanII	GRGCYC	1 cut(s)	435
BbsI	GAAGAC	2 cut(s)	422, 584
Bbv12I	GWGCWC	1 cut(s)	435
BbvI	GCAGC	3 cut(s)	259, 396, 459
BccI	CCATC	4 cut(s)	92, 481, 535, 626
BceAI	ACGGC	4 cut(s)	320, 325, 358, 535
BciT130I	CCWGG	1 cut(s)	395
BcnI	CCSGG	1 cut(s)	441
BcoDI	GTCTC	2 cut(s)	381, 398
BcuI	ACTAGT	1 cut(s)	638
BfaI	CTAG	2 cut(s)	101, 639
BfoI	RGCGCY	2 cut(s)	294, 401
BfuAI	ACCTGC	1 cut(s)	356
BglI	GCCNNNNNGGC	1 cut(s)	489
BisI	GCNGC	7 cut(s)	238, 248, 268, 271, 294, 410, 473
BlsI	GCNGC	7 cut(s)	239, 249, 269, 272, 295, 411, 474
Bme1390I	CCNGG	2 cut(s)	395, 441
Bme18I	GGWCC	1 cut(s)	50
BmeT110I	CYCGRG	1 cut(s)	434
BmgT120I	GGNCC	2 cut(s)	50, 235
BmiI	GGNNCC	8 cut(s)	206, 256, 292, 346, 399, 523, 546, 609
BmrFI	CCNGG	2 cut(s)	395, 441
BmrI	ACTGGG	1 cut(s)	779
BmsI	GCATC	2 cut(s)	181, 339
BmuI	ACTGGG	1 cut(s)	779
BpiI	GAAGAC	2 cut(s)	422, 584
BpmI	CTGGAG	1 cut(s)	479
BpuMI	CCSGG	1 cut(s)	441
BsaHI	GRCGYC	3 cut(s)	291, 312, 398
BsaJI	CCNNGG	1 cut(s)	319
BsaWI	WCCGGW	2 cut(s)	201, 215
BsaXI	ACNNNNNCTCC	4 cut(s)	71, 101, 110, 140
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 400
Bse118I	RCCGGY	1 cut(s)	524
Bse1I	ACTGG	2 cut(s)	52, 774
BseBI	CCWGG	1 cut(s)	395
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	3 cut(s)	492, 637, 661
BseLI	CCNNNNNNNGG	2 cut(s)	47, 400
BseMII	CTCAG	3 cut(s)	610, 719, 808
BseNI	ACTGG	2 cut(s)	52, 774
BseRI	GAGGAG	4 cut(s)	30, 79, 174, 566
BseXI	GCAGC	3 cut(s)	259, 396, 459
Bsh1236I	CGCG	2 cut(s)	240, 374
BshFI	GGCC	2 cut(s)	237, 393
BshNI	GGYRCC	8 cut(s)	204, 254, 290, 344, 397, 521, 544, 607
BsiHKAI	GWGCWC	1 cut(s)	435
BsiHKCI	CYCGRG	1 cut(s)	434
BsiSI	CCGG	7 cut(s)	202, 216, 401, 440, 484, 525, 548
BslFI	GGGAC	2 cut(s)	522, 649
BslI	CCNNNNNNNGG	2 cut(s)	47, 400
BsmAI	GTCTC	2 cut(s)	381, 398
BsmBI	CGTCTC	2 cut(s)	381, 398
BsmFI	GGGAC	2 cut(s)	522, 649
BsnI	GGCC	2 cut(s)	237, 393
BsoBI	CYCGRG	1 cut(s)	434
Bsp1286I	GDGCHC	1 cut(s)	435
Bsp143I	GATC	2 cut(s)	179, 567
BspANI	GGCC	2 cut(s)	237, 393
BspCNI	CTCAG	3 cut(s)	609, 718, 807
BspFNI	CGCG	2 cut(s)	240, 374
BspLI	GGNNCC	8 cut(s)	206, 256, 292, 346, 399, 523, 546, 609
BspMI	ACCTGC	1 cut(s)	356
BspPI	GGATC	1 cut(s)	575
BspT107I	GGYRCC	8 cut(s)	204, 254, 290, 344, 397, 521, 544, 607
BsrBI	CCGCTC	2 cut(s)	140, 463
BsrFI	RCCGGY	1 cut(s)	524
BsrI	ACTGG	2 cut(s)	52, 774
BssAI	RCCGGY	1 cut(s)	524
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	2 cut(s)	179, 567
BssNI	GRCGYC	3 cut(s)	291, 312, 398
Bst2UI	CCWGG	1 cut(s)	395
Bst4CI	ACNGT	4 cut(s)	301, 358, 388, 649
Bst6I	CTCTTC	3 cut(s)	155, 215, 666
BstACI	GRCGYC	3 cut(s)	291, 312, 398
BstAPI	GCANNNNNTGC	1 cut(s)	502
BstC8I	GCNNGC	2 cut(s)	465, 494
BstDEI	CTNAG	3 cut(s)	596, 705, 794
BstF5I	GGATG	3 cut(s)	492, 637, 661
BstFNI	CGCG	2 cut(s)	240, 374
BstH2I	RGCGCY	2 cut(s)	294, 401
BstHHI	GCGC	2 cut(s)	293, 400
BstKTI	GATC	2 cut(s)	182, 570
BstMAI	GTCTC	2 cut(s)	381, 398
BstMBI	GATC	2 cut(s)	179, 567
BstMWI	GCNNNNNNNGC	7 cut(s)	169, 406, 430, 445, 469, 489, 502
BstNI	CCWGG	1 cut(s)	395
BstNSI	RCATGY	1 cut(s)	515
BstSCI	CCNGG	2 cut(s)	393, 439
BstUI	CGCG	2 cut(s)	240, 374
BstV1I	GCAGC	3 cut(s)	259, 396, 459
BstV2I	GAAGAC	2 cut(s)	422, 584
BsuRI	GGCC	2 cut(s)	237, 393
BtgZI	GCGATG	1 cut(s)	316
BtsCI	GGATG	3 cut(s)	492, 637, 661
BtsIMutI	CAGTG	1 cut(s)	297
BveI	ACCTGC	1 cut(s)	356
Cac8I	GCNNGC	2 cut(s)	465, 494
CfoI	GCGC	2 cut(s)	293, 400
Cfr10I	RCCGGY	1 cut(s)	524
Cfr13I	GGNCC	2 cut(s)	50, 235
CseI	GACGC	5 cut(s)	229, 301, 363, 380, 415
CviAII	CATG	3 cut(s)	280, 512, 688
DdeI	CTNAG	3 cut(s)	596, 705, 794
DinI	GGCGCC	2 cut(s)	292, 399
DpnI	GATC	2 cut(s)	181, 569
DpnII	GATC	2 cut(s)	179, 567
Eam1104I	CTCTTC	3 cut(s)	155, 215, 666
EarI	CTCTTC	3 cut(s)	155, 215, 666
Ecl136II	GAGCTC	1 cut(s)	433
Eco24I	GRGCYC	1 cut(s)	435
Eco47I	GGWCC	1 cut(s)	50
Eco53kI	GAGCTC	1 cut(s)	433
Eco88I	CYCGRG	1 cut(s)	434
EcoICRI	GAGCTC	1 cut(s)	433
EcoRI	GAATTC	1 cut(s)	365
EcoRII	CCWGG	1 cut(s)	393
EcoT38I	GRGCYC	1 cut(s)	435
EgeI	GGCGCC	2 cut(s)	292, 399
EheI	GGCGCC	2 cut(s)	292, 399
Esp3I	CGTCTC	2 cut(s)	381, 398
FaeI	CATG	3 cut(s)	283, 515, 691
FaiI	YATR	9 cut(s)	281, 513, 603, 621, 623, 689, 702, 767, 780
FaqI	GGGAC	2 cut(s)	522, 649
FatI	CATG	3 cut(s)	279, 511, 687
FauI	CCCGC	3 cut(s)	197, 456, 485
Fnu4HI	GCNGC	7 cut(s)	238, 248, 268, 271, 294, 410, 473
FokI	GGATG	3 cut(s)	499, 644, 668
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	7 cut(s)	238, 248, 268, 271, 294, 410, 473
FspBI	CTAG	2 cut(s)	101, 639
GlaI	GCGC	2 cut(s)	292, 399
GluI	GCNGC	7 cut(s)	238, 248, 268, 271, 294, 410, 473
GsuI	CTGGAG	1 cut(s)	479
HaeII	RGCGCY	2 cut(s)	294, 401
HaeIII	GGCC	2 cut(s)	237, 393
HapII	CCGG	7 cut(s)	202, 216, 401, 440, 484, 525, 548
HgaI	GACGC	5 cut(s)	229, 301, 363, 380, 415
HhaI	GCGC	2 cut(s)	293, 400
Hin1I	GRCGYC	3 cut(s)	291, 312, 398
Hin1II	CATG	3 cut(s)	283, 515, 691
Hin6I	GCGC	2 cut(s)	291, 398
HinP1I	GCGC	2 cut(s)	291, 398
HincII	GTYRAC	2 cut(s)	340, 811
HindII	GTYRAC	2 cut(s)	340, 811
HinfI	GANTC	7 cut(s)	108, 219, 285, 454, 557, 721, 812
HpaII	CCGG	7 cut(s)	202, 216, 401, 440, 484, 525, 548
HphI	GGTGA	8 cut(s)	103, 205, 346, 376, 463, 586, 730, 760
Hpy166II	GTNNAC	4 cut(s)	316, 340, 517, 811
Hpy188I	TCNGA	3 cut(s)	179, 262, 645
Hpy188III	TCNNGA	1 cut(s)	458
Hpy8I	GTNNAC	4 cut(s)	316, 340, 517, 811
Hpy99I	CGWCG	6 cut(s)	227, 311, 374, 392, 481, 586
HpyAV	CCTTC	6 cut(s)	85, 124, 580, 706, 727, 739
HpyCH4III	ACNGT	4 cut(s)	301, 358, 388, 649
HpyCH4V	TGCA	1 cut(s)	505
HpyF10VI	GCNNNNNNNGC	7 cut(s)	169, 406, 430, 445, 469, 489, 502
HpyF3I	CTNAG	3 cut(s)	596, 705, 794
Hsp92I	GRCGYC	3 cut(s)	291, 312, 398
Hsp92II	CATG	3 cut(s)	283, 515, 691
HspAI	GCGC	2 cut(s)	291, 398
KasI	GGCGCC	2 cut(s)	290, 397
Kzo9I	GATC	2 cut(s)	179, 567
LmnI	GCTCC	2 cut(s)	430, 460
Lsp1109I	GCAGC	3 cut(s)	259, 396, 459
LweI	GCATC	2 cut(s)	181, 339
MaeI	CTAG	2 cut(s)	101, 639
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	2 cut(s)	181, 569
MbiI	CCGCTC	2 cut(s)	140, 463
MboI	GATC	2 cut(s)	179, 567
MboII	GAAGA	6 cut(s)	142, 202, 427, 589, 683, 742
MhlI	GDGCHC	1 cut(s)	435
MluCI	AATT	3 cut(s)	365, 682, 751
MluI	ACGCGT	1 cut(s)	372
Mly113I	GGCGCC	2 cut(s)	291, 398
MlyI	GAGTC	1 cut(s)	806
MmeI	TCCRAC	2 cut(s)	77, 285
MslI	CAYNNNNRTG	1 cut(s)	692
MspA1I	CMGCKG	1 cut(s)	267
MspI	CCGG	7 cut(s)	202, 216, 401, 440, 484, 525, 548
MspR9I	CCNGG	2 cut(s)	395, 441
MvaI	CCWGG	1 cut(s)	395
MvnI	CGCG	2 cut(s)	240, 374
MwoI	GCNNNNNNNGC	7 cut(s)	169, 406, 430, 445, 469, 489, 502
NarI	GGCGCC	2 cut(s)	291, 398
NciI	CCSGG	1 cut(s)	441
NdeII	GATC	2 cut(s)	179, 567
NlaIII	CATG	3 cut(s)	283, 515, 691
NlaIV	GGNNCC	8 cut(s)	206, 256, 292, 346, 399, 523, 546, 609
NmeAIII	GCCGAG	1 cut(s)	300
NmuCI	GTSAC	1 cut(s)	358
NspI	RCATGY	1 cut(s)	515
PaeR7I	CTCGAG	1 cut(s)	434
PaqCI	CACCTGC	1 cut(s)	356
PciI	ACATGT	1 cut(s)	511
PcsI	WCGNNNNNNNCGW	2 cut(s)	258, 525
PfeI	GAWTC	6 cut(s)	108, 219, 285, 454, 557, 721
PflFI	GACNNNGTC	1 cut(s)	311
PkrI	GCNGC	7 cut(s)	239, 249, 269, 272, 295, 411, 474
PleI	GAGTC	1 cut(s)	806
PluTI	GGCGCC	2 cut(s)	294, 401
PpsI	GAGTC	1 cut(s)	806
PscI	ACATGT	1 cut(s)	511
Psp124BI	GAGCTC	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	393
PspN4I	GGNNCC	8 cut(s)	206, 256, 292, 346, 399, 523, 546, 609
PspPI	GGNCC	2 cut(s)	50, 235
PspXI	VCTCGAGB	1 cut(s)	434
PsyI	GACNNNGTC	1 cut(s)	311
RseI	CAYNNNNRTG	1 cut(s)	692
SacI	GAGCTC	1 cut(s)	435
SatI	GCNGC	7 cut(s)	238, 248, 268, 271, 294, 410, 473
Sau3AI	GATC	2 cut(s)	179, 567
Sau96I	GGNCC	2 cut(s)	50, 235
SchI	GAGTC	1 cut(s)	806
ScrFI	CCNGG	2 cut(s)	395, 441
SduI	GDGCHC	1 cut(s)	435
SfaNI	GCATC	2 cut(s)	181, 339
SfoI	GGCGCC	2 cut(s)	292, 399
Sfr274I	CTCGAG	1 cut(s)	434
SgrAI	CRCCGGYG	1 cut(s)	524
SinI	GGWCC	1 cut(s)	50
SlaI	CTCGAG	1 cut(s)	434
SmiMI	CAYNNNNRTG	1 cut(s)	692
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
SpeI	ACTAGT	1 cut(s)	638
Sse9I	AATT	3 cut(s)	365, 682, 751
SspDI	GGCGCC	2 cut(s)	290, 397
SspMI	CTAG	2 cut(s)	101, 639
SstI	GAGCTC	1 cut(s)	435
StyD4I	CCNGG	2 cut(s)	393, 439
TaaI	ACNGT	4 cut(s)	301, 358, 388, 649
TaqI	TCGA	7 cut(s)	225, 276, 306, 369, 435, 539, 824
TasI	AATT	3 cut(s)	365, 682, 751
TauI	GCSGC	4 cut(s)	240, 270, 273, 296
TfiI	GAWTC	6 cut(s)	108, 219, 285, 454, 557, 721
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	3 cut(s)	247, 409, 472
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	2 cut(s)	676, 684
TspGWI	ACGGA	1 cut(s)	377
TspRI	CASTG	1 cut(s)	304
Tth111I	GACNNNGTC	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	50
XapI	RAATTY	2 cut(s)	365, 751
XceI	RCATGY	1 cut(s)	515
XhoI	CTCGAG	1 cut(s)	434
XspI	CTAG	2 cut(s)	101, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.