Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010453

Physical Location & Seq

Genomic Coordinates Forward (+)

9068252 .. 9070473

Gene Structure 2222 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G21160.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGATGAATCTTAGGGTTTTGTTCCTCGCTCTCCTTCTCCTTGCATCTCCTCTGCTTCAAGTTGCTAGATGTCAATCGGATGCCGAGGATCATTCAAGTCTTGTTGACGATGTTGTGGGAGAAAACACTGATGATGCGGTTGAGGAAGATGACCATGATTTGGATATGAACTTGTCCTCATTTCCAGGAGTTGAGACTGTTTGTGTTTTCCCCAAAAACAGTGCCAAATTGGTTCCAGCTGGAGAAGAGACTGAGCTCCTTGTTGGTCTTAAAAATGAAGGGAAAACTAGAGTAGGTGTGATGGGAATTAGGGCCAGCGTTCATCTTCCTTATGATCATAAGTTGTTGGTTCAGAATCTAACCATGTTGAGACTTAACAATGCATCCATCCCAACGTCTCTTCAAGCAACATTCCCATACATCTTTGCAGTCAGCCAGTACTTGCAGCCTGGAGCATTTGATCTGGTGGGTTATATCATATACGATGTGGAAGGAAAGCCATACCAGAGTGTCTTCTACAATGGAACCATAGAGGTAGTTGAATCTGGAGGTCTTCTCAGCGGCGAATCTGTTTTCCTTTTAACACTCGGAATCGGTCTCCTCCTCCTCCTCGGTCTATGGGCATACAGCCAAGTTCAGCGTCTCACCAAGAAAACCAAAAAGGTTTCCAAGGTGGAAGTAGGAACTAGGTCTACCGAGGCATCACTCGATGAATGGCTCGAGGGAACTACTTTGGCCAAGACATCGTCTGGGAAAACAAAGAACAAGAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006605 GO:0006612 GO:0006613 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031090 GO:0031976 GO:0031984 GO:0033036 GO:0034357 GO:0034613 GO:0042175 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090150 GO:0098588 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

TRAP_alpha

Protein Analysis

258

Amino Acids

28.17

Weight (kDa)

5.08

Isoelectric Point (pI)

35.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAP_alpha	PF03896	73 - 155	1.1e-07	Translocon-associated protein (TRAP), alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21160 AT2G21160
fragaria_vesca	FvH4_2g01990 FvH4_2g01990
malus_domestica	MD10G1118300.v1.1 MD10G1118400.v1.1
prunus_persica	Prupe.8G160800_v2.0.a1
pyrus_communis	pycom10g10220 pycom10g10230 pycom10g10240
rosa_chinensis	RchiOBHm_Chr6g0245171
rosa_laevigata	RLG00000015319
rosa_multiflora	Rmu_sc0001288.1_g000003 Rmu_sc0015012.1_g000002
rosa_roxburghii	Rroxscaffold_7G00215390
rosa_rugosa	Rorug05G0512500
rosa_samantha	Rh6AG027600 Rh6BG023700 Rh6CG022100 Rh6DG022200
rosa_wichuraiana	Rw6G002330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	160
AccI	GTMKAC	1 cut(s)	692
AciI	CCGC	2 cut(s)	137, 561
AclWI	GGATC	1 cut(s)	96
AcoI	YGGCCR	1 cut(s)	735
AfaI	GTAC	1 cut(s)	440
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	4 cut(s)	59, 96, 404, 542
AjnI	CCWGG	2 cut(s)	184, 448
AluBI	AGCT	2 cut(s)	239, 256
AluI	AGCT	2 cut(s)	239, 256
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	6 cut(s)	188, 242, 364, 402, 602, 647
AlwI	GGATC	1 cut(s)	96
Ama87I	CYCGRG	1 cut(s)	719
AoxI	GGCC	2 cut(s)	312, 735
ApeKI	GCWGC	1 cut(s)	445
AspS9I	GGNCC	1 cut(s)	312
AsuHPI	GGTGA	1 cut(s)	637
AvaI	CYCGRG	1 cut(s)	719
BalI	TGGCCA	1 cut(s)	737
BanII	GRGCYC	1 cut(s)	258
BbsI	GAAGAC	2 cut(s)	505, 545
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	2 cut(s)	295, 395
BciT130I	CCWGG	2 cut(s)	186, 450
BclI	TGATCA	1 cut(s)	334
BcoDI	GTCTC	6 cut(s)	188, 242, 364, 402, 602, 647
BfaI	CTAG	3 cut(s)	66, 288, 687
BisI	GCNGC	2 cut(s)	446, 562
BlsI	GCNGC	2 cut(s)	447, 563
BmcAI	AGTACT	1 cut(s)	440
Bme1390I	CCNGG	2 cut(s)	186, 450
BmeT110I	CYCGRG	1 cut(s)	719
BmgT120I	GGNCC	1 cut(s)	312
BmiI	GGNNCC	2 cut(s)	234, 526
BmrFI	CCNGG	2 cut(s)	186, 450
BmsI	GCATC	5 cut(s)	53, 70, 124, 392, 710
BpiI	GAAGAC	2 cut(s)	505, 545
BplI	GAGNNNNNCTC	2 cut(s)	540, 572
BpmI	CTGGAG	3 cut(s)	261, 471, 567
BsaBI	GATNNNNATC	1 cut(s)	73
BsaI	GGTCTC	1 cut(s)	602
BsaJI	CCNNGG	4 cut(s)	84, 610, 669, 696
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	1 cut(s)	436
Bse8I	GATNNNNATC	1 cut(s)	73
BseBI	CCWGG	2 cut(s)	186, 450
BseDI	CCNNGG	4 cut(s)	84, 610, 669, 696
BseGI	GGATG	3 cut(s)	85, 383, 387
BseJI	GATNNNNATC	1 cut(s)	73
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMII	CTCAG	2 cut(s)	243, 571
BseNI	ACTGG	1 cut(s)	436
BseRI	GAGGAG	5 cut(s)	39, 590, 593, 596, 599
BseXI	GCAGC	1 cut(s)	457
BshFI	GGCC	2 cut(s)	314, 737
BsiHKAI	GWGCWC	1 cut(s)	258
BsiHKCI	CYCGRG	1 cut(s)	719
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	6 cut(s)	188, 242, 364, 402, 602, 647
BsmBI	CGTCTC	2 cut(s)	402, 647
BsnI	GGCC	2 cut(s)	314, 737
Bso31I	GGTCTC	1 cut(s)	602
BsoBI	CYCGRG	1 cut(s)	719
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	3 cut(s)	88, 334, 460
BspACI	CCGC	2 cut(s)	137, 561
BspANI	GGCC	2 cut(s)	314, 737
BspCNI	CTCAG	2 cut(s)	244, 570
BspLI	GGNNCC	2 cut(s)	234, 526
BspPI	GGATC	1 cut(s)	96
BspTNI	GGTCTC	1 cut(s)	602
BsrI	ACTGG	1 cut(s)	436
BssECI	CCNNGG	4 cut(s)	84, 610, 669, 696
BssMI	GATC	3 cut(s)	88, 334, 460
BssT1I	CCWWGG	1 cut(s)	669
Bst2UI	CCWGG	2 cut(s)	186, 450
Bst4CI	ACNGT	2 cut(s)	199, 221
Bst6I	CTCTTC	2 cut(s)	240, 405
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	3 cut(s)	11, 252, 557
BstF5I	GGATG	3 cut(s)	85, 383, 387
BstKTI	GATC	3 cut(s)	91, 337, 463
BstMAI	GTCTC	6 cut(s)	188, 242, 364, 402, 602, 647
BstMBI	GATC	3 cut(s)	88, 334, 460
BstNI	CCWGG	2 cut(s)	186, 450
BstSCI	CCNGG	2 cut(s)	184, 448
BstV1I	GCAGC	1 cut(s)	457
BstV2I	GAAGAC	2 cut(s)	505, 545
BsuRI	GGCC	2 cut(s)	314, 737
BtsCI	GGATG	3 cut(s)	85, 383, 387
BtsIMutI	CAGTG	2 cut(s)	126, 226
Cac8I	GCNNGC	1 cut(s)	316
Cfr13I	GGNCC	1 cut(s)	312
CseI	GACGC	1 cut(s)	629
Csp6I	GTAC	1 cut(s)	439
CviAII	CATG	2 cut(s)	155, 364
CviJI	RGCY	9 cut(s)	239, 256, 314, 435, 448, 499, 630, 718, 737
CviKI_1	RGCY	9 cut(s)	239, 256, 314, 435, 448, 499, 630, 718, 737
CviQI	GTAC	1 cut(s)	439
DdeI	CTNAG	3 cut(s)	11, 252, 557
DpnI	GATC	3 cut(s)	90, 336, 462
DpnII	GATC	3 cut(s)	88, 334, 460
EaeI	YGGCCR	1 cut(s)	735
Eam1104I	CTCTTC	2 cut(s)	240, 405
EarI	CTCTTC	2 cut(s)	240, 405
Ecl136II	GAGCTC	1 cut(s)	256
Eco130I	CCWWGG	1 cut(s)	669
Eco24I	GRGCYC	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	602
Eco53kI	GAGCTC	1 cut(s)	256
Eco88I	CYCGRG	1 cut(s)	719
EcoICRI	GAGCTC	1 cut(s)	256
EcoRII	CCWGG	2 cut(s)	184, 448
EcoT14I	CCWWGG	1 cut(s)	669
EcoT22I	ATGCAT	1 cut(s)	385
EcoT38I	GRGCYC	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	669
Esp3I	CGTCTC	2 cut(s)	402, 647
FaeI	CATG	2 cut(s)	158, 367
FatI	CATG	2 cut(s)	154, 363
FbaI	TGATCA	1 cut(s)	334
FblI	GTMKAC	1 cut(s)	692
Fnu4HI	GCNGC	2 cut(s)	446, 562
FokI	GGATG	3 cut(s)	92, 370, 374
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	2 cut(s)	446, 562
FspBI	CTAG	3 cut(s)	66, 288, 687
GluI	GCNGC	2 cut(s)	446, 562
GsuI	CTGGAG	3 cut(s)	261, 471, 567
HaeIII	GGCC	2 cut(s)	314, 737
HgaI	GACGC	1 cut(s)	629
Hin1II	CATG	2 cut(s)	158, 367
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	5 cut(s)	7, 355, 542, 566, 591
HphI	GGTGA	1 cut(s)	637
Hpy166II	GTNNAC	2 cut(s)	106, 693
Hpy188I	TCNGA	3 cut(s)	79, 354, 590
Hpy188III	TCNNGA	1 cut(s)	546
Hpy8I	GTNNAC	2 cut(s)	106, 693
HpyAV	CCTTC	3 cut(s)	44, 272, 485
HpyCH4III	ACNGT	2 cut(s)	199, 221
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	4 cut(s)	44, 383, 428, 445
HpyF3I	CTNAG	3 cut(s)	11, 252, 557
HpySE526I	ACGT	1 cut(s)	395
Hsp92II	CATG	2 cut(s)	158, 367
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	3 cut(s)	88, 334, 460
LmnI	GCTCC	2 cut(s)	261, 452
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	5 cut(s)	53, 70, 124, 392, 710
MaeI	CTAG	3 cut(s)	66, 288, 687
MaeII	ACGT	1 cut(s)	395
MalI	GATC	3 cut(s)	90, 336, 462
MboI	GATC	3 cut(s)	88, 334, 460
MboII	GAAGA	6 cut(s)	158, 257, 317, 392, 505, 545
MhlI	GDGCHC	1 cut(s)	258
MlsI	TGGCCA	1 cut(s)	737
MluCI	AATT	2 cut(s)	227, 306
MluNI	TGGCCA	1 cut(s)	737
Mox20I	TGGCCA	1 cut(s)	737
Mph1103I	ATGCAT	1 cut(s)	385
MscI	TGGCCA	1 cut(s)	737
MseI	TTAA	3 cut(s)	270, 375, 581
Msp20I	TGGCCA	1 cut(s)	737
MspA1I	CMGCKG	2 cut(s)	239, 561
MspR9I	CCNGG	2 cut(s)	186, 450
MvaI	CCWGG	2 cut(s)	186, 450
NdeII	GATC	3 cut(s)	88, 334, 460
NlaIII	CATG	2 cut(s)	158, 367
NlaIV	GGNNCC	2 cut(s)	234, 526
NmeAIII	GCCGAG	1 cut(s)	109
NsiI	ATGCAT	1 cut(s)	385
PaeR7I	CTCGAG	1 cut(s)	719
PfeI	GAWTC	5 cut(s)	7, 355, 542, 566, 591
PflFI	GACNNNGTC	1 cut(s)	745
PflMI	CCANNNNNTGG	1 cut(s)	160
PfoI	TCCNGGA	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	447, 563
Psp124BI	GAGCTC	1 cut(s)	258
Psp6I	CCWGG	2 cut(s)	184, 448
PspGI	CCWGG	2 cut(s)	184, 448
PspN4I	GGNNCC	2 cut(s)	234, 526
PspPI	GGNCC	1 cut(s)	312
PspXI	VCTCGAGB	1 cut(s)	719
PsrI	GAACNNNNNNTAC	2 cut(s)	676, 708
PsyI	GACNNNGTC	1 cut(s)	745
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
SacI	GAGCTC	1 cut(s)	258
SaqAI	TTAA	3 cut(s)	270, 375, 581
SatI	GCNGC	2 cut(s)	446, 562
Sau3AI	GATC	3 cut(s)	88, 334, 460
Sau96I	GGNCC	1 cut(s)	312
ScaI	AGTACT	1 cut(s)	440
ScrFI	CCNGG	2 cut(s)	186, 450
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	9 cut(s)	241, 258, 298, 398, 537, 553, 666, 675, 692
SfaNI	GCATC	5 cut(s)	53, 70, 124, 392, 710
Sfr274I	CTCGAG	1 cut(s)	719
SlaI	CTCGAG	1 cut(s)	719
SmlI	CTYRAG	1 cut(s)	719
SmoI	CTYRAG	1 cut(s)	719
Sse9I	AATT	2 cut(s)	227, 306
SsiI	CCGC	2 cut(s)	137, 561
SspMI	CTAG	3 cut(s)	66, 288, 687
SstI	GAGCTC	1 cut(s)	258
StyD4I	CCNGG	2 cut(s)	184, 448
StyI	CCWWGG	1 cut(s)	669
TaaI	ACNGT	2 cut(s)	199, 221
TaiI	ACGT	1 cut(s)	398
TaqI	TCGA	2 cut(s)	708, 720
TaqII	GACCGA	2 cut(s)	584, 602
TasI	AATT	2 cut(s)	227, 306
TatI	WGTACW	1 cut(s)	438
TauI	GCSGC	1 cut(s)	564
TfiI	GAWTC	5 cut(s)	7, 355, 542, 566, 591
Tru1I	TTAA	3 cut(s)	270, 375, 581
Tru9I	TTAA	3 cut(s)	270, 375, 581
TscAI	CASTG	2 cut(s)	133, 226
TseI	GCWGC	1 cut(s)	445
TspDTI	ATGAA	5 cut(s)	20, 182, 291, 311, 726
TspRI	CASTG	2 cut(s)	133, 226
Tth111I	GACNNNGTC	1 cut(s)	745
Van91I	CCANNNNNTGG	1 cut(s)	160
XhoI	CTCGAG	1 cut(s)	719
XmiI	GTMKAC	1 cut(s)	692
XspI	CTAG	3 cut(s)	66, 288, 687
ZrmI	AGTACT	1 cut(s)	440
Zsp2I	ATGCAT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.