Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010453

Physical Location & Seq

Genomic Coordinates Forward (+)

13543789 .. 13547290

Gene Structure 3502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g10240.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGAAATTGAAGAACTGTTGCTATAATTTACTCCTCGATTACCTCCGAATTCTGAGAATTGTCGTCATTCTTCGCTTTAGGCACTGTGTTGAAACCCTCGCTCTCTTTCTCACTACAAATCTCACACCAACATCACAGCCCCACCCCACCCTAAAGAACAAGCTCCGACCACCGCCCATGGCGACCAGCGTGATTAGGGTTCTTCTTCTCACTCTCCTCCTCATCGCATCCCCTTTCCTCCAAGTCGCCAGGGGCCAGTCTAATTCGGAAGTGGATGCTTCTGACACCGTGGAAGAAGCTAGTGATCTTGGGATTGTTGGCGAGGATGTCCAAGATTTTGGAGAGGGAAATTTTAGCCCAGCTCCCGGAGTTGATACAATCTGTTTCTTCCCCAAAAACATCGCTAAAACGGTGGCGGCAGGGGAAGAGACTGAAATACTGGTTGGTCTGAAAAATGATGGAGAGTCAAGCTTGAATGTGATTGCAGTCAAAGCCAGCGTTCATCTTCCTTTCGATCACAATCTGCTGGTTCAGAATCTTACTGCCCAGGCTTTTAACAATGGATCAGTTCCAGCTTCGGCCCAGGCTACTTTCCCATACATATTTGCTGTCAGCAAGTTCTTACAGCCTGGCGCTTTTGATCTCGTGGGTACCATTTATTATGAGATAGACCAGCAACCATACCAGAGCACCTTCTACAATGGTACTATCGAAGTTGTTGAGGCTGGTGCTATGCTCAGCATTGAGTCTGTTTTTCTTGTCACCCTTGGATGTGCCCTTCTTGTCCTCCTAGGTTTATGGATTCATGGTCAAATACAGCACCTTTCTAAGAAAACCAAGAGGGCTCCCAAGGTGGAAGTTGGAACCAAGGCTACCGATGCCTCTATGGATGAATGGCTTCAGGGAACTGCATATACTCAGTCAGTCAAAGACAAAACAAAGAAGAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006605 GO:0006612 GO:0006613 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031090 GO:0031976 GO:0031984 GO:0033036 GO:0034357 GO:0034613 GO:0042175 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090150 GO:0098588 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

TRAP_alpha

Protein Analysis

318

Amino Acids

34.66

Weight (kDa)

6.32

Isoelectric Point (pI)

41.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21160 AT2G21160
fragaria_vesca	FvH4_2g01990 FvH4_2g01990
malus_domestica	MD10G1118300.v1.1 MD10G1118400.v1.1
prunus_persica	Prupe.8G160800_v2.0.a1
pyrus_communis	pycom10g10220 pycom10g10230 pycom10g10240
rosa_chinensis	RchiOBHm_Chr6g0245171
rosa_laevigata	RLG00000015319
rosa_multiflora	Rmu_sc0001288.1_g000003 Rmu_sc0015012.1_g000002
rosa_roxburghii	Rroxscaffold_7G00215390
rosa_rugosa	Rorug05G0512500
rosa_samantha	Rh6AG027600 Rh6BG023700 Rh6CG022100 Rh6DG022200
rosa_wichuraiana	Rw6G002330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	650
AccB1I	GGYRCC	1 cut(s)	650
AciI	CCGC	2 cut(s)	173, 416
AclWI	GGATC	1 cut(s)	571
AcsI	RAATTY	2 cut(s)	48, 349
AcuI	CTGAAG	1 cut(s)	884
AfaI	GTAC	2 cut(s)	652, 706
AfiI	CCNNNNNNNGG	1 cut(s)	365
AgsI	TTSAA	3 cut(s)	10, 92, 475
AjnI	CCWGG	4 cut(s)	248, 546, 582, 628
AjuI	GAANNNNNNNTTGG	2 cut(s)	426, 458
AluBI	AGCT	5 cut(s)	163, 299, 362, 471, 575
AluI	AGCT	5 cut(s)	163, 299, 362, 471, 575
Alw21I	GWGCWC	1 cut(s)	692
Alw26I	GTCTC	1 cut(s)	422
AlwI	GGATC	1 cut(s)	571
AoxI	GGCC	2 cut(s)	253, 579
ApoI	RAATTY	2 cut(s)	48, 349
Asp700I	GAANNNNTTC	1 cut(s)	897
Asp718I	GGTACC	1 cut(s)	650
AspA2I	CCTAGG	1 cut(s)	790
AspLEI	GCGC	1 cut(s)	635
AspS9I	GGNCC	2 cut(s)	253, 580
AsuC2I	CCSGG	1 cut(s)	366
AsuHPI	GGTGA	1 cut(s)	754
AvrII	CCTAGG	1 cut(s)	790
BaeGI	GKGCMC	1 cut(s)	778
BanI	GGYRCC	1 cut(s)	650
BanII	GRGCYC	1 cut(s)	847
BauI	CACGAG	1 cut(s)	644
Bbv12I	GWGCWC	1 cut(s)	692
BccI	CCATC	1 cut(s)	452
BciT130I	CCWGG	4 cut(s)	250, 548, 584, 630
BcnI	CCSGG	1 cut(s)	366
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	2 cut(s)	300, 791
BfoI	RGCGCY	1 cut(s)	636
BisI	GCNGC	1 cut(s)	417
BlnI	CCTAGG	1 cut(s)	790
BlpI	GCTNAGC	1 cut(s)	737
BlsI	GCNGC	1 cut(s)	418
Bme1390I	CCNGG	5 cut(s)	250, 366, 548, 584, 630
BmgT120I	GGNCC	2 cut(s)	253, 580
BmiI	GGNNCC	4 cut(s)	254, 652, 846, 865
BmrFI	CCNGG	5 cut(s)	250, 366, 548, 584, 630
BmsI	GCATC	3 cut(s)	236, 265, 868
Bpu1102I	GCTNAGC	1 cut(s)	737
BpuMI	CCSGG	1 cut(s)	366
BsaBI	GATNNNNATC	1 cut(s)	519
BsaJI	CCNNGG	9 cut(s)	177, 249, 288, 546, 582, 766, 790, 849, 867
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
Bse1I	ACTGG	2 cut(s)	256, 444
Bse8I	GATNNNNATC	1 cut(s)	519
BseBI	CCWGG	4 cut(s)	250, 548, 584, 630
BseDI	CCNNGG	9 cut(s)	177, 249, 288, 546, 582, 766, 790, 849, 867
BseGI	GGATG	5 cut(s)	227, 280, 331, 776, 895
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseMII	CTCAG	3 cut(s)	44, 751, 932
BseNI	ACTGG	2 cut(s)	256, 444
BseRI	GAGGAG	3 cut(s)	23, 206, 209
BseSI	GKGCMC	1 cut(s)	778
BseYI	CCCAGC	1 cut(s)	358
BshFI	GGCC	2 cut(s)	255, 581
BshNI	GGYRCC	1 cut(s)	650
BsiHKAI	GWGCWC	1 cut(s)	692
BsiSI	CCGG	1 cut(s)	366
BslI	CCNNNNNNNGG	1 cut(s)	365
BsmAI	GTCTC	1 cut(s)	422
BsnI	GGCC	2 cut(s)	255, 581
Bsp1286I	GDGCHC	3 cut(s)	692, 778, 847
Bsp143I	GATC	4 cut(s)	304, 514, 563, 640
Bsp1720I	GCTNAGC	1 cut(s)	737
Bsp19I	CCATGG	1 cut(s)	177
BspACI	CCGC	2 cut(s)	173, 416
BspANI	GGCC	2 cut(s)	255, 581
BspCNI	CTCAG	3 cut(s)	45, 750, 931
BspLI	GGNNCC	4 cut(s)	254, 652, 846, 865
BspPI	GGATC	1 cut(s)	571
BspT107I	GGYRCC	1 cut(s)	650
BsrI	ACTGG	2 cut(s)	256, 444
BssECI	CCNNGG	9 cut(s)	177, 249, 288, 546, 582, 766, 790, 849, 867
BssMI	GATC	4 cut(s)	304, 514, 563, 640
BssSI	CACGAG	1 cut(s)	644
BssT1I	CCWWGG	5 cut(s)	177, 766, 790, 849, 867
Bst2BI	CACGAG	1 cut(s)	644
Bst2UI	CCWGG	4 cut(s)	250, 548, 584, 630
Bst4CI	ACNGT	4 cut(s)	17, 86, 289, 412
Bst6I	CTCTTC	1 cut(s)	420
BstC8I	GCNNGC	1 cut(s)	496
BstDEI	CTNAG	4 cut(s)	53, 737, 828, 918
BstDSI	CCRYGG	2 cut(s)	177, 288
BstF5I	GGATG	5 cut(s)	227, 280, 331, 776, 895
BstH2I	RGCGCY	1 cut(s)	636
BstHHI	GCGC	1 cut(s)	635
BstKTI	GATC	4 cut(s)	307, 517, 566, 643
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	4 cut(s)	304, 514, 563, 640
BstMWI	GCNNNNNNNGC	2 cut(s)	491, 878
BstNI	CCWGG	4 cut(s)	250, 548, 584, 630
BstSCI	CCNGG	5 cut(s)	248, 364, 546, 582, 628
BstSLI	GKGCMC	1 cut(s)	778
BstXI	CCANNNNNNTGG	1 cut(s)	338
BsuRI	GGCC	2 cut(s)	255, 581
BtgI	CCRYGG	2 cut(s)	177, 288
BtgZI	GCGATG	2 cut(s)	208, 385
BtsCI	GGATG	5 cut(s)	227, 280, 331, 776, 895
BtsIMutI	CAGTG	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	496
CfoI	GCGC	1 cut(s)	635
Cfr13I	GGNCC	2 cut(s)	253, 580
Csp6I	GTAC	2 cut(s)	651, 705
CviAII	CATG	2 cut(s)	178, 806
CviQI	GTAC	2 cut(s)	651, 705
DdeI	CTNAG	4 cut(s)	53, 737, 828, 918
DpnI	GATC	4 cut(s)	306, 516, 565, 642
DpnII	GATC	4 cut(s)	304, 514, 563, 640
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
Eco130I	CCWWGG	5 cut(s)	177, 766, 790, 849, 867
Eco24I	GRGCYC	1 cut(s)	847
Eco57I	CTGAAG	1 cut(s)	884
EcoRI	GAATTC	1 cut(s)	48
EcoRII	CCWGG	4 cut(s)	248, 546, 582, 628
EcoT14I	CCWWGG	5 cut(s)	177, 766, 790, 849, 867
EcoT38I	GRGCYC	1 cut(s)	847
ErhI	CCWWGG	5 cut(s)	177, 766, 790, 849, 867
FaeI	CATG	2 cut(s)	181, 809
FatI	CATG	2 cut(s)	177, 805
Fnu4HI	GCNGC	1 cut(s)	417
FokI	GGATG	5 cut(s)	214, 287, 338, 783, 902
FriOI	GRGCYC	1 cut(s)	847
Fsp4HI	GCNGC	1 cut(s)	417
FspBI	CTAG	2 cut(s)	300, 791
GlaI	GCGC	1 cut(s)	634
GluI	GCNGC	1 cut(s)	417
GsaI	CCCAGC	1 cut(s)	362
HaeII	RGCGCY	1 cut(s)	636
HaeIII	GGCC	2 cut(s)	255, 581
HapII	CCGG	1 cut(s)	366
HhaI	GCGC	1 cut(s)	635
Hin1II	CATG	2 cut(s)	181, 809
Hin6I	GCGC	1 cut(s)	633
HinP1I	GCGC	1 cut(s)	633
HindIII	AAGCTT	1 cut(s)	469
HinfI	GANTC	4 cut(s)	464, 535, 746, 802
HpaII	CCGG	1 cut(s)	366
HphI	GGTGA	1 cut(s)	754
Hpy188I	TCNGA	7 cut(s)	47, 54, 167, 268, 283, 450, 534
HpyAV	CCTTC	2 cut(s)	703, 788
HpyCH4III	ACNGT	4 cut(s)	17, 86, 289, 412
HpyCH4V	TGCA	2 cut(s)	485, 911
HpyF10VI	GCNNNNNNNGC	2 cut(s)	491, 878
HpyF3I	CTNAG	4 cut(s)	53, 737, 828, 918
Hsp92II	CATG	2 cut(s)	181, 809
HspAI	GCGC	1 cut(s)	633
KpnI	GGTACC	1 cut(s)	654
Kzo9I	GATC	4 cut(s)	304, 514, 563, 640
LmnI	GCTCC	3 cut(s)	168, 367, 850
LweI	GCATC	3 cut(s)	236, 265, 868
MaeI	CTAG	2 cut(s)	300, 791
MaeIII	GTNAC	1 cut(s)	760
MalI	GATC	4 cut(s)	306, 516, 565, 642
MboI	GATC	4 cut(s)	304, 514, 563, 640
MboII	GAAGA	8 cut(s)	22, 62, 194, 197, 305, 379, 437, 497
MhlI	GDGCHC	3 cut(s)	692, 778, 847
MluCI	AATT	6 cut(s)	5, 25, 48, 57, 262, 349
MlyI	GAGTC	2 cut(s)	473, 755
MmeI	TCCRAC	2 cut(s)	190, 841
MroXI	GAANNNNTTC	1 cut(s)	897
MseI	TTAA	1 cut(s)	555
MspI	CCGG	1 cut(s)	366
MspR9I	CCNGG	5 cut(s)	250, 366, 548, 584, 630
MvaI	CCWGG	4 cut(s)	250, 548, 584, 630
MwoI	GCNNNNNNNGC	2 cut(s)	491, 878
NciI	CCSGG	1 cut(s)	366
NcoI	CCATGG	1 cut(s)	177
NdeII	GATC	4 cut(s)	304, 514, 563, 640
NlaIII	CATG	2 cut(s)	181, 809
NlaIV	GGNNCC	4 cut(s)	254, 652, 846, 865
NmuCI	GTSAC	1 cut(s)	760
PdmI	GAANNNNTTC	1 cut(s)	897
PfeI	GAWTC	2 cut(s)	535, 802
PfoI	TCCNGGA	1 cut(s)	364
PkrI	GCNGC	1 cut(s)	418
PleI	GAGTC	2 cut(s)	472, 754
PpsI	GAGTC	2 cut(s)	472, 754
Psp6I	CCWGG	4 cut(s)	248, 546, 582, 628
PspFI	CCCAGC	1 cut(s)	358
PspGI	CCWGG	4 cut(s)	248, 546, 582, 628
PspN4I	GGNNCC	4 cut(s)	254, 652, 846, 865
PspPI	GGNCC	2 cut(s)	253, 580
PsrI	GAACNNNNNNTAC	4 cut(s)	856, 888, 898, 930
RsaI	GTAC	2 cut(s)	652, 706
RsaNI	GTAC	2 cut(s)	651, 705
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	1 cut(s)	417
Sau3AI	GATC	4 cut(s)	304, 514, 563, 640
Sau96I	GGNCC	2 cut(s)	253, 580
SchI	GAGTC	2 cut(s)	473, 755
ScrFI	CCNGG	5 cut(s)	250, 366, 548, 584, 630
SduI	GDGCHC	3 cut(s)	692, 778, 847
SfaNI	GCATC	3 cut(s)	236, 265, 868
Sse9I	AATT	6 cut(s)	5, 25, 48, 57, 262, 349
SsiI	CCGC	2 cut(s)	173, 416
SspMI	CTAG	2 cut(s)	300, 791
StyD4I	CCNGG	5 cut(s)	248, 364, 546, 582, 628
StyI	CCWWGG	5 cut(s)	177, 766, 790, 849, 867
TaaI	ACNGT	4 cut(s)	17, 86, 289, 412
TaqI	TCGA	3 cut(s)	36, 513, 711
TasI	AATT	6 cut(s)	5, 25, 48, 57, 262, 349
TauI	GCSGC	1 cut(s)	419
TfiI	GAWTC	2 cut(s)	535, 802
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TscAI	CASTG	1 cut(s)	89
TseFI	GTSAC	1 cut(s)	760
Tsp45I	GTSAC	1 cut(s)	760
TspDTI	ATGAA	4 cut(s)	17, 491, 794, 906
TspRI	CASTG	1 cut(s)	89
XapI	RAATTY	2 cut(s)	48, 349
XmaJI	CCTAGG	1 cut(s)	790
XmnI	GAANNNNTTC	1 cut(s)	897
XspI	CTAG	2 cut(s)	300, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.