Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010453

Physical Location & Seq

Genomic Coordinates Forward (+)

13533928 .. 13536251

Gene Structure 2324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g10230.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGGAGTGCTTTTAACAATGGATCAGTTCCAGCTTCGGCTCAGGCTGCTTTCCCATACATATTTGCTGTCAGCAAGTTCTTACAGGCAGCCTGGCGCTTTTGATCTCGTGGGTACCATTTATTATGAGATAGACCAGCAACCATACCAGAGCACCTTCTACAATGGTACTATCGAAGTTGTTGAGGCCGGTGCTATGCTCAGCATTGAGTCTGTTTTTCTTGTCACCCTTGGATGTGCCCTTCTTGTCCTCCTAGGTTTATGGATTCATGGTCAAATACAGCACCTTTCTAAGAAAACCAAGAGGGCTCCCAAGGTGGAAGTTGGAACCAAGGCTACCGATGCCTCTATGGATGAATGGCTTCAGGGAACTGCATATACTCAGTCAGTCAAAGACAAAACAAAGAAGAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006605 GO:0006612 GO:0006613 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031090 GO:0031976 GO:0031984 GO:0033036 GO:0034357 GO:0034613 GO:0042175 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090150 GO:0098588 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

TRAP_alpha

Protein Analysis

139

Amino Acids

15.46

Weight (kDa)

8.97

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21160 AT2G21160
fragaria_vesca	FvH4_2g01990 FvH4_2g01990
malus_domestica	MD10G1118300.v1.1 MD10G1118400.v1.1
prunus_persica	Prupe.8G160800_v2.0.a1
pyrus_communis	pycom10g10220 pycom10g10230 pycom10g10240
rosa_chinensis	RchiOBHm_Chr6g0245171
rosa_laevigata	RLG00000015319
rosa_multiflora	Rmu_sc0001288.1_g000003 Rmu_sc0015012.1_g000002
rosa_roxburghii	Rroxscaffold_7G00215390
rosa_rugosa	Rorug05G0512500
rosa_samantha	Rh6AG027600 Rh6BG023700 Rh6CG022100 Rh6DG022200
rosa_wichuraiana	Rw6G002330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	113
AccB1I	GGYRCC	1 cut(s)	113
AclWI	GGATC	1 cut(s)	30
AcuI	CTGAAG	1 cut(s)	347
AfaI	GTAC	2 cut(s)	115, 169
AjnI	CCWGG	1 cut(s)	91
AluBI	AGCT	1 cut(s)	34
AluI	AGCT	1 cut(s)	34
Alw21I	GWGCWC	1 cut(s)	155
AlwI	GGATC	1 cut(s)	30
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	2 cut(s)	46, 88
Asp700I	GAANNNNTTC	1 cut(s)	360
Asp718I	GGTACC	1 cut(s)	113
AspA2I	CCTAGG	1 cut(s)	253
AspLEI	GCGC	1 cut(s)	98
AsuHPI	GGTGA	1 cut(s)	217
AvrII	CCTAGG	1 cut(s)	253
BaeGI	GKGCMC	1 cut(s)	241
BanI	GGYRCC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	310
BauI	CACGAG	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	155
BbvI	GCAGC	2 cut(s)	33, 100
BciT130I	CCWGG	1 cut(s)	93
BfaI	CTAG	1 cut(s)	254
BfoI	RGCGCY	1 cut(s)	99
BisI	GCNGC	2 cut(s)	47, 89
BlnI	CCTAGG	1 cut(s)	253
BlpI	GCTNAGC	1 cut(s)	200
BlsI	GCNGC	2 cut(s)	48, 90
Bme1390I	CCNGG	1 cut(s)	93
BmiI	GGNNCC	3 cut(s)	115, 309, 328
BmrFI	CCNGG	1 cut(s)	93
BmsI	GCATC	1 cut(s)	331
Bpu10I	CCTNAGC	1 cut(s)	41
Bpu1102I	GCTNAGC	1 cut(s)	200
BsaJI	CCNNGG	4 cut(s)	229, 253, 312, 330
Bse118I	RCCGGY	1 cut(s)	188
BseBI	CCWGG	1 cut(s)	93
BseDI	CCNNGG	4 cut(s)	229, 253, 312, 330
BseGI	GGATG	2 cut(s)	239, 358
BseMII	CTCAG	3 cut(s)	55, 214, 395
BseSI	GKGCMC	1 cut(s)	241
BseXI	GCAGC	2 cut(s)	33, 100
BshFI	GGCC	1 cut(s)	188
BshNI	GGYRCC	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	189
BsnI	GGCC	1 cut(s)	188
Bsp1286I	GDGCHC	3 cut(s)	155, 241, 310
Bsp143I	GATC	2 cut(s)	22, 103
Bsp1720I	GCTNAGC	1 cut(s)	200
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	3 cut(s)	54, 213, 394
BspLI	GGNNCC	3 cut(s)	115, 309, 328
BspPI	GGATC	1 cut(s)	30
BspT107I	GGYRCC	1 cut(s)	113
BsrFI	RCCGGY	1 cut(s)	188
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	4 cut(s)	229, 253, 312, 330
BssMI	GATC	2 cut(s)	22, 103
BssSI	CACGAG	1 cut(s)	107
BssT1I	CCWWGG	4 cut(s)	229, 253, 312, 330
Bst2BI	CACGAG	1 cut(s)	107
Bst2UI	CCWGG	1 cut(s)	93
BstDEI	CTNAG	4 cut(s)	41, 200, 291, 381
BstF5I	GGATG	2 cut(s)	239, 358
BstH2I	RGCGCY	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	2 cut(s)	25, 106
BstMBI	GATC	2 cut(s)	22, 103
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 341
BstNI	CCWGG	1 cut(s)	93
BstSCI	CCNGG	1 cut(s)	91
BstSLI	GKGCMC	1 cut(s)	241
BstV1I	GCAGC	2 cut(s)	33, 100
BsuRI	GGCC	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	239, 358
CfoI	GCGC	1 cut(s)	98
Cfr10I	RCCGGY	1 cut(s)	188
Csp6I	GTAC	2 cut(s)	114, 168
CviAII	CATG	1 cut(s)	269
CviJI	RGCY	8 cut(s)	34, 40, 46, 91, 188, 308, 335, 361
CviKI_1	RGCY	8 cut(s)	34, 40, 46, 91, 188, 308, 335, 361
CviQI	GTAC	2 cut(s)	114, 168
DdeI	CTNAG	4 cut(s)	41, 200, 291, 381
DpnI	GATC	2 cut(s)	24, 105
DpnII	GATC	2 cut(s)	22, 103
Eco130I	CCWWGG	4 cut(s)	229, 253, 312, 330
Eco24I	GRGCYC	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	91
EcoT14I	CCWWGG	4 cut(s)	229, 253, 312, 330
EcoT38I	GRGCYC	1 cut(s)	310
ErhI	CCWWGG	4 cut(s)	229, 253, 312, 330
FaeI	CATG	1 cut(s)	272
FatI	CATG	1 cut(s)	268
Fnu4HI	GCNGC	2 cut(s)	47, 89
FokI	GGATG	2 cut(s)	246, 365
FriOI	GRGCYC	1 cut(s)	310
Fsp4HI	GCNGC	2 cut(s)	47, 89
FspBI	CTAG	1 cut(s)	254
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	2 cut(s)	47, 89
HaeII	RGCGCY	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	1 cut(s)	189
HhaI	GCGC	1 cut(s)	98
Hin1II	CATG	1 cut(s)	272
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HinfI	GANTC	2 cut(s)	209, 265
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	1 cut(s)	217
HpyAV	CCTTC	2 cut(s)	166, 251
HpyCH4V	TGCA	1 cut(s)	374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 341
HpyF3I	CTNAG	4 cut(s)	41, 200, 291, 381
Hsp92II	CATG	1 cut(s)	272
HspAI	GCGC	1 cut(s)	96
KpnI	GGTACC	1 cut(s)	117
Kzo9I	GATC	2 cut(s)	22, 103
LmnI	GCTCC	1 cut(s)	313
LpnPI	CCDG	9 cut(s)	28, 44, 70, 78, 105, 149, 161, 202, 350
Lsp1109I	GCAGC	2 cut(s)	33, 100
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	1 cut(s)	254
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	2 cut(s)	24, 105
MboI	GATC	2 cut(s)	22, 103
MhlI	GDGCHC	3 cut(s)	155, 241, 310
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	1 cut(s)	304
MnlI	CCTC	4 cut(s)	178, 260, 297, 355
MroXI	GAANNNNTTC	1 cut(s)	360
MseI	TTAA	1 cut(s)	14
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	93
MvaI	CCWGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	2 cut(s)	46, 341
NdeII	GATC	2 cut(s)	22, 103
NlaIII	CATG	1 cut(s)	272
NlaIV	GGNNCC	3 cut(s)	115, 309, 328
NmuCI	GTSAC	1 cut(s)	223
PdmI	GAANNNNTTC	1 cut(s)	360
PfeI	GAWTC	1 cut(s)	265
PkrI	GCNGC	2 cut(s)	48, 90
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
Psp6I	CCWGG	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	91
PspN4I	GGNNCC	3 cut(s)	115, 309, 328
PsrI	GAACNNNNNNTAC	4 cut(s)	319, 351, 361, 393
RsaI	GTAC	2 cut(s)	115, 169
RsaNI	GTAC	2 cut(s)	114, 168
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	2 cut(s)	47, 89
Sau3AI	GATC	2 cut(s)	22, 103
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	93
SduI	GDGCHC	3 cut(s)	155, 241, 310
SetI	ASST	5 cut(s)	36, 158, 259, 288, 318
SfaNI	GCATC	1 cut(s)	331
SspMI	CTAG	1 cut(s)	254
StyD4I	CCNGG	1 cut(s)	91
StyI	CCWWGG	4 cut(s)	229, 253, 312, 330
TaqI	TCGA	1 cut(s)	174
TfiI	GAWTC	1 cut(s)	265
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	2 cut(s)	46, 88
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	2 cut(s)	257, 369
XmaJI	CCTAGG	1 cut(s)	253
XmnI	GAANNNNTTC	1 cut(s)	360
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.