Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010453

Physical Location & Seq

Genomic Coordinates Reverse (-)

1686299 .. 1691306

Gene Structure 5008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g01990.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCGGCCATGTCGATTAGGGTTCTGCTCCTCGCTCTCCTCCTCATCGCTTCCCCCTTCCTCCAAGTCGCCAGGGGTGAGTCTGACTCAGAAGCAGATTCTGTGTCTGAGGTTGTGGGAGAGAATAGCGATCTTGGGACTGTAGGCGATGAAGAGCAGGATTTTGTGGATACAAGTTATAGTCCAGCACCAGGCATTGAGACAATCTGTGTTTTCCCCAAAAATAAAGCAAAAACTGTGGCAGCAGGGGAACAGACTGAACTACTTGTTGGACTGAGAAATGATGGGGAGTCAAGCCTGAATGTGATTGCAGTCAAAGCCAGTGTTCATCTTCCATTTGATCACAACCTGTTGGTTCAGAATCTTACTGCATTGGCTTTTAACAATGCATCAGTTCCAGCTTCAGCTCAGGCTACCTTTCCATACCTATTTGCTGTCAGCAAGTACTTGCAGCCTGGAACCTTTGATCTAGTGGGTACTATTATCTATGAGATTGACAATCATCCATACCAAAGCACATACTACAATGGTACCATTGAGGTTGTTGAGGCTGGTAGTCTACTCAGCATCGAGTCTGTTTTCCTTATAACTCTTGGATTTGCTCTTCTCGTCCTCTTGGGATTGTGGATTCAAGGTCAAATCCAGCACCTTTCAAAGAAGACCAAGAGGGCTCCAAAGGTAGAAGTTGGAACCAGGTCTACAGATGCCAACATGGACGAATGGCTTGAGGGAACAGCATATACTCAGTCACTCAACAACAAGTCCAAGAAGAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006605 GO:0006612 GO:0006613 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031090 GO:0031976 GO:0031984 GO:0033036 GO:0034357 GO:0034613 GO:0042175 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090150 GO:0098588 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

TRAP_alpha

Protein Analysis

260

Amino Acids

28.0

Weight (kDa)

4.87

Isoelectric Point (pI)

45.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAP_alpha	PF03896	76 - 242	3.6e-12	Translocon-associated protein (TRAP), alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21160 AT2G21160
fragaria_vesca	FvH4_2g01990 FvH4_2g01990
malus_domestica	MD10G1118300.v1.1 MD10G1118400.v1.1
prunus_persica	Prupe.8G160800_v2.0.a1
pyrus_communis	pycom10g10220 pycom10g10230 pycom10g10240
rosa_chinensis	RchiOBHm_Chr6g0245171
rosa_laevigata	RLG00000015319
rosa_multiflora	Rmu_sc0001288.1_g000003 Rmu_sc0015012.1_g000002
rosa_roxburghii	Rroxscaffold_7G00215390
rosa_rugosa	Rorug05G0512500
rosa_samantha	Rh6AG027600 Rh6BG023700 Rh6CG022100 Rh6DG022200
rosa_wichuraiana	Rw6G002330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	587
Acc65I	GGTACC	1 cut(s)	530
AccB1I	GGYRCC	1 cut(s)	530
AccI	GTMKAC	2 cut(s)	559, 698
AciI	CCGC	1 cut(s)	5
AcoI	YGGCCR	1 cut(s)	6
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	3 cut(s)	446, 478, 532
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	2 cut(s)	632, 654
AjnI	CCWGG	4 cut(s)	71, 190, 454, 692
AjuI	GAANNNNNNNTTGG	2 cut(s)	252, 284
AluBI	AGCT	2 cut(s)	401, 407
AluI	AGCT	2 cut(s)	401, 407
Alw26I	GTCTC	1 cut(s)	194
AlwNI	CAGNNNCTG	1 cut(s)	101
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	2 cut(s)	242, 451
Asp718I	GGTACC	1 cut(s)	530
AsuHPI	GGTGA	1 cut(s)	89
BaeI	ACNNNNGTAYC	2 cut(s)	514, 547
BanI	GGYRCC	1 cut(s)	530
BanII	GRGCYC	1 cut(s)	673
BbsI	GAAGAC	1 cut(s)	665
BbvI	GCAGC	2 cut(s)	254, 463
BccI	CCATC	1 cut(s)	278
BciT130I	CCWGG	4 cut(s)	73, 192, 456, 694
BciVI	GTATCC	1 cut(s)	163
BclI	TGATCA	1 cut(s)	340
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	1 cut(s)	470
BfmI	CTRYAG	2 cut(s)	141, 699
BfuI	GTATCC	1 cut(s)	163
BisI	GCNGC	3 cut(s)	6, 243, 452
BlsI	GCNGC	3 cut(s)	7, 244, 453
BmcAI	AGTACT	1 cut(s)	446
Bme1390I	CCNGG	4 cut(s)	73, 192, 456, 694
BmiI	GGNNCC	4 cut(s)	460, 532, 672, 691
BmrFI	CCNGG	4 cut(s)	73, 192, 456, 694
BmsI	GCATC	3 cut(s)	398, 576, 694
BpiI	GAAGAC	1 cut(s)	665
BplI	GAGNNNNNCTC	2 cut(s)	71, 103
Bpu10I	CCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	746
BsaJI	CCNNGG	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	321
BseBI	CCWGG	4 cut(s)	73, 192, 456, 694
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	1 cut(s)	502
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMII	CTCAG	6 cut(s)	99, 102, 266, 422, 577, 758
BseNI	ACTGG	1 cut(s)	321
BseRI	GAGGAG	3 cut(s)	20, 29, 32
BseXI	GCAGC	2 cut(s)	254, 463
BshFI	GGCC	1 cut(s)	8
BshNI	GGYRCC	1 cut(s)	530
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmAI	GTCTC	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	151
BsnI	GGCC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	673
Bsp143I	GATC	3 cut(s)	130, 340, 466
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	6 cut(s)	100, 101, 267, 421, 576, 757
BspLI	GGNNCC	4 cut(s)	460, 532, 672, 691
BspQI	GCTCTTC	2 cut(s)	147, 609
BspT107I	GGYRCC	1 cut(s)	530
BsrI	ACTGG	1 cut(s)	321
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	3 cut(s)	130, 340, 466
Bst2UI	CCWGG	4 cut(s)	73, 192, 456, 694
Bst4CI	ACNGT	2 cut(s)	142, 238
Bst6I	CTCTTC	2 cut(s)	147, 609
BstDEI	CTNAG	6 cut(s)	88, 108, 275, 408, 563, 744
BstF5I	GGATG	1 cut(s)	502
BstKTI	GATC	3 cut(s)	133, 343, 469
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	3 cut(s)	130, 340, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstNI	CCWGG	4 cut(s)	73, 192, 456, 694
BstSCI	CCNGG	4 cut(s)	71, 190, 454, 692
BstSFI	CTRYAG	2 cut(s)	141, 699
BstV1I	GCAGC	2 cut(s)	254, 463
BstV2I	GAAGAC	1 cut(s)	665
BsuI	GTATCC	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	8
BtgZI	GCGATG	2 cut(s)	31, 162
BtsCI	GGATG	1 cut(s)	502
BtsIMutI	CAGTG	1 cut(s)	328
CaiI	CAGNNNCTG	1 cut(s)	101
CsiI	ACCWGGT	1 cut(s)	692
Csp6I	GTAC	3 cut(s)	445, 477, 531
CspCI	CAANNNNNGTGG	2 cut(s)	219, 254
CviAII	CATG	2 cut(s)	10, 712
CviQI	GTAC	3 cut(s)	445, 477, 531
DdeI	CTNAG	6 cut(s)	88, 108, 275, 408, 563, 744
DpnI	GATC	3 cut(s)	132, 342, 468
DpnII	GATC	3 cut(s)	130, 340, 466
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	2 cut(s)	147, 609
EarI	CTCTTC	2 cut(s)	147, 609
Eco24I	GRGCYC	1 cut(s)	673
Eco57I	CTGAAG	1 cut(s)	387
EcoRII	CCWGG	4 cut(s)	71, 190, 454, 692
EcoT22I	ATGCAT	1 cut(s)	391
EcoT38I	GRGCYC	1 cut(s)	673
FaeI	CATG	2 cut(s)	13, 715
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	2 cut(s)	9, 711
FbaI	TGATCA	1 cut(s)	340
FblI	GTMKAC	2 cut(s)	559, 698
Fnu4HI	GCNGC	3 cut(s)	6, 243, 452
FokI	GGATG	1 cut(s)	489
FriOI	GRGCYC	1 cut(s)	673
Fsp4HI	GCNGC	3 cut(s)	6, 243, 452
FspBI	CTAG	1 cut(s)	470
GluI	GCNGC	3 cut(s)	6, 243, 452
HaeIII	GGCC	1 cut(s)	8
Hin1II	CATG	2 cut(s)	13, 715
HinfI	GANTC	7 cut(s)	80, 86, 98, 290, 361, 572, 628
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	2 cut(s)	560, 699
Hpy188I	TCNGA	4 cut(s)	85, 91, 109, 360
Hpy8I	GTNNAC	2 cut(s)	560, 699
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	2 cut(s)	142, 238
HpyCH4V	TGCA	4 cut(s)	311, 371, 389, 451
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	6 cut(s)	88, 108, 275, 408, 563, 744
Hsp92II	CATG	2 cut(s)	13, 715
KpnI	GGTACC	1 cut(s)	534
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	3 cut(s)	130, 340, 466
LguI	GCTCTTC	2 cut(s)	147, 609
LmnI	GCTCC	2 cut(s)	33, 676
Lsp1109I	GCAGC	2 cut(s)	254, 463
LweI	GCATC	3 cut(s)	398, 576, 694
MabI	ACCWGGT	1 cut(s)	692
MaeI	CTAG	1 cut(s)	470
MaeIII	GTNAC	1 cut(s)	747
MalI	GATC	3 cut(s)	132, 342, 468
MboI	GATC	3 cut(s)	130, 340, 466
MboII	GAAGA	4 cut(s)	164, 323, 596, 670
MhlI	GDGCHC	1 cut(s)	673
MlyI	GAGTC	4 cut(s)	80, 89, 299, 581
MmeI	TCCRAC	2 cut(s)	250, 667
Mph1103I	ATGCAT	1 cut(s)	391
MseI	TTAA	1 cut(s)	381
MspR9I	CCNGG	4 cut(s)	73, 192, 456, 694
MvaI	CCWGG	4 cut(s)	73, 192, 456, 694
MwoI	GCNNNNNNNGC	1 cut(s)	317
NdeII	GATC	3 cut(s)	130, 340, 466
NlaIII	CATG	2 cut(s)	13, 715
NlaIV	GGNNCC	4 cut(s)	460, 532, 672, 691
NmuCI	GTSAC	1 cut(s)	747
NsiI	ATGCAT	1 cut(s)	391
PciSI	GCTCTTC	2 cut(s)	147, 609
PfeI	GAWTC	3 cut(s)	98, 361, 628
PkrI	GCNGC	3 cut(s)	7, 244, 453
PleI	GAGTC	4 cut(s)	80, 88, 298, 580
PpsI	GAGTC	4 cut(s)	80, 88, 298, 580
PsiI	TTATAA	1 cut(s)	587
Psp6I	CCWGG	4 cut(s)	71, 190, 454, 692
PspGI	CCWGG	4 cut(s)	71, 190, 454, 692
PspN4I	GGNNCC	4 cut(s)	460, 532, 672, 691
PsrI	GAACNNNNNNTAC	4 cut(s)	682, 714, 724, 756
PstNI	CAGNNNCTG	1 cut(s)	101
RsaI	GTAC	3 cut(s)	446, 478, 532
RsaNI	GTAC	3 cut(s)	445, 477, 531
SapI	GCTCTTC	2 cut(s)	147, 609
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	3 cut(s)	6, 243, 452
Sau3AI	GATC	3 cut(s)	130, 340, 466
ScaI	AGTACT	1 cut(s)	446
SchI	GAGTC	4 cut(s)	80, 89, 299, 581
ScrFI	CCNGG	4 cut(s)	73, 192, 456, 694
SduI	GDGCHC	1 cut(s)	673
SexAI	ACCWGGT	1 cut(s)	692
SfaNI	GCATC	3 cut(s)	398, 576, 694
SfcI	CTRYAG	2 cut(s)	141, 699
SmlI	CTYRAG	1 cut(s)	725
SmoI	CTYRAG	1 cut(s)	725
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	470
StyD4I	CCNGG	4 cut(s)	71, 190, 454, 692
TaaI	ACNGT	2 cut(s)	142, 238
TaqI	TCGA	2 cut(s)	14, 570
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	98, 361, 628
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	1 cut(s)	747
TseI	GCWGC	2 cut(s)	242, 451
Tsp45I	GTSAC	1 cut(s)	747
TspDTI	ATGAA	2 cut(s)	165, 317
TspRI	CASTG	1 cut(s)	328
XmiI	GTMKAC	2 cut(s)	559, 698
XspI	CTAG	1 cut(s)	470
ZrmI	AGTACT	1 cut(s)	446
Zsp2I	ATGCAT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.