Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010453

Physical Location & Seq

Genomic Coordinates Forward (+)

16920683 .. 16924768

Gene Structure 4086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G160800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGAGACCAAGGCGATTAGGGTTTTTCTCTTCGCTCTCCTCCTCATCGCAGCGCCTTTCCTCCAAGTCGCCAGGGGTCAGTCTGATTCGGAAGTGGATACTTCTGAAACCGTAGAAGAAAGCAGTGATCTTGGGATTGTTGGTGAGGATGTCCAAGATTTTGGAGATGGAAATTTTAGCCCAGCTCCCGGTGTTGATACGATCTGTGTCTTCCCCAAAAACAGCGCTAAATCGGTGAATGCAGGGGAAGAGACTGAACTACTGGTTGGACTGAAAAATGATGGGGAGTCAAGCTTGAATGTGATTGCAATCAAAGCCAGTGTCCATCTCCCTTTTGATCACAATCTACTGGTTCAGAATCTTACTGCACAGACTTTTAACAATGGGTCAGTTCCAGCTTCGGCTCAGGCTACTTTCCCATACATATTTGCTGTCAGCAAGTTCTTGCAGCCTGGAACTTTTGATCTTGTGGGTACCGTATATTATGAGATAGACCAGCAACCATACCAGAGCACCTTCTACAATGGTACCATTGAAGTTGTTGAGGCTGGTGCTTTCCTGAGCATTGAGTCTGTTTTTCTTGTCACACTTGGATTTGCCCTTCTTGTCCTGCTGGGTCTATGGATTCATGGCCAAATACAACACCTTTCCAAGAAAACTAAGAGGGCTCCCAAGGTGGAAGTTGGAACCAGGGCTACAGATGCCTCAATGGATGAATGGCTTCAGGGAACTGCATATACTCAGTCACTCAACAAATCATCAAAGAAGAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006605 GO:0006612 GO:0006613 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031090 GO:0031976 GO:0031984 GO:0033036 GO:0034357 GO:0034613 GO:0042175 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090150 GO:0098588 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

TRAP_alpha

Protein Analysis

259

Amino Acids

27.94

Weight (kDa)

4.86

Isoelectric Point (pI)

42.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21160 AT2G21160
fragaria_vesca	FvH4_2g01990 FvH4_2g01990
malus_domestica	MD10G1118300.v1.1 MD10G1118400.v1.1
prunus_persica	Prupe.8G160800_v2.0.a1
pyrus_communis	pycom10g10220 pycom10g10230 pycom10g10240
rosa_chinensis	RchiOBHm_Chr6g0245171
rosa_laevigata	RLG00000015319
rosa_multiflora	Rmu_sc0001288.1_g000003 Rmu_sc0015012.1_g000002
rosa_roxburghii	Rroxscaffold_7G00215390
rosa_rugosa	Rorug05G0512500
rosa_samantha	Rh6AG027600 Rh6BG023700 Rh6CG022100 Rh6DG022200
rosa_wichuraiana	Rw6G002330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	473, 527
AccB1I	GGYRCC	2 cut(s)	473, 527
AcoI	YGGCCR	1 cut(s)	631
AcsI	RAATTY	1 cut(s)	172
AcuI	CTGAAG	1 cut(s)	707
AfaI	GTAC	2 cut(s)	475, 529
AfeI	AGCGCT	1 cut(s)	226
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	298, 536
AjnI	CCWGG	3 cut(s)	71, 451, 689
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	3 cut(s)	185, 294, 398
AluI	AGCT	3 cut(s)	185, 294, 398
Alw21I	GWGCWC	1 cut(s)	515
Alw26I	GTCTC	1 cut(s)	245
Aor51HI	AGCGCT	1 cut(s)	226
AoxI	GGCC	1 cut(s)	631
ApeKI	GCWGC	2 cut(s)	50, 448
ApoI	RAATTY	1 cut(s)	172
ArsI	GACNNNNNNTTYG	2 cut(s)	306, 338
Asp700I	GAANNNNTTC	1 cut(s)	720
Asp718I	GGTACC	2 cut(s)	473, 527
AspLEI	GCGC	2 cut(s)	55, 227
AsuC2I	CCSGG	1 cut(s)	189
AsuHPI	GGTGA	2 cut(s)	155, 247
BaeI	ACNNNNGTAYC	2 cut(s)	511, 544
BalI	TGGCCA	1 cut(s)	633
BanI	GGYRCC	2 cut(s)	473, 527
BanII	GRGCYC	1 cut(s)	670
BbsI	GAAGAC	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	515
BbvI	GCAGC	2 cut(s)	62, 460
BccI	CCATC	3 cut(s)	161, 275, 333
BciT130I	CCWGG	3 cut(s)	73, 453, 691
BciVI	GTATCC	1 cut(s)	91
BclI	TGATCA	1 cut(s)	337
BcnI	CCSGG	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	245
BfmI	CTRYAG	1 cut(s)	696
BfoI	RGCGCY	2 cut(s)	56, 228
BfuI	GTATCC	1 cut(s)	91
BisI	GCNGC	2 cut(s)	51, 449
BlsI	GCNGC	2 cut(s)	52, 450
Bme1390I	CCNGG	4 cut(s)	73, 189, 453, 691
BmiI	GGNNCC	4 cut(s)	475, 529, 669, 688
BmrFI	CCNGG	4 cut(s)	73, 189, 453, 691
BmsI	GCATC	1 cut(s)	691
BpiI	GAAGAC	1 cut(s)	202
Bpu10I	CCTNAGC	2 cut(s)	405, 560
BpuMI	CCSGG	1 cut(s)	189
BsaBI	GATNNNNATC	2 cut(s)	308, 342
BsaJI	CCNNGG	4 cut(s)	9, 72, 672, 690
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	3 cut(s)	267, 318, 354
Bse8I	GATNNNNATC	2 cut(s)	308, 342
BseBI	CCWGG	3 cut(s)	73, 453, 691
BseDI	CCNNGG	4 cut(s)	9, 72, 672, 690
BseGI	GGATG	2 cut(s)	154, 718
BseJI	GATNNNNATC	2 cut(s)	308, 342
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMII	CTCAG	3 cut(s)	419, 551, 755
BseNI	ACTGG	3 cut(s)	267, 318, 354
BseRI	GAGGAG	2 cut(s)	29, 32
BseXI	GCAGC	2 cut(s)	62, 460
BseYI	CCCAGC	2 cut(s)	181, 613
BsgI	GTGCAG	1 cut(s)	351
BshFI	GGCC	1 cut(s)	633
BshNI	GGYRCC	2 cut(s)	473, 527
BsiHKAI	GWGCWC	1 cut(s)	515
BsiSI	CCGG	1 cut(s)	189
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	245
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	1 cut(s)	633
Bsp1286I	GDGCHC	2 cut(s)	515, 670
Bsp143I	GATC	4 cut(s)	127, 201, 337, 463
BspANI	GGCC	1 cut(s)	633
BspCNI	CTCAG	3 cut(s)	418, 552, 754
BspLI	GGNNCC	4 cut(s)	475, 529, 669, 688
BspT107I	GGYRCC	2 cut(s)	473, 527
BsrI	ACTGG	3 cut(s)	267, 318, 354
BssECI	CCNNGG	4 cut(s)	9, 72, 672, 690
BssMI	GATC	4 cut(s)	127, 201, 337, 463
BssT1I	CCWWGG	2 cut(s)	9, 672
Bst2UI	CCWGG	3 cut(s)	73, 453, 691
Bst4CI	ACNGT	2 cut(s)	112, 478
Bst6I	CTCTTC	2 cut(s)	35, 243
BstDEI	CTNAG	4 cut(s)	405, 560, 660, 741
BstF5I	GGATG	2 cut(s)	154, 718
BstH2I	RGCGCY	2 cut(s)	56, 228
BstHHI	GCGC	2 cut(s)	55, 227
BstKTI	GATC	4 cut(s)	130, 204, 340, 466
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	4 cut(s)	127, 201, 337, 463
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 701
BstNI	CCWGG	3 cut(s)	73, 453, 691
BstSCI	CCNGG	4 cut(s)	71, 187, 451, 689
BstSFI	CTRYAG	1 cut(s)	696
BstV1I	GCAGC	2 cut(s)	62, 460
BstV2I	GAAGAC	1 cut(s)	202
BstXI	CCANNNNNNTGG	1 cut(s)	161
BsuI	GTATCC	1 cut(s)	91
BsuRI	GGCC	1 cut(s)	633
BtgZI	GCGATG	1 cut(s)	31
BtsCI	GGATG	2 cut(s)	154, 718
BtsI	GCAGTG	1 cut(s)	130
BtsIMutI	CAGTG	2 cut(s)	130, 325
CfoI	GCGC	2 cut(s)	55, 227
Csp6I	GTAC	2 cut(s)	474, 528
CviAII	CATG	1 cut(s)	629
CviQI	GTAC	2 cut(s)	474, 528
DdeI	CTNAG	4 cut(s)	405, 560, 660, 741
DpnI	GATC	4 cut(s)	129, 203, 339, 465
DpnII	GATC	4 cut(s)	127, 201, 337, 463
EaeI	YGGCCR	1 cut(s)	631
Eam1104I	CTCTTC	2 cut(s)	35, 243
EarI	CTCTTC	2 cut(s)	35, 243
Eco130I	CCWWGG	2 cut(s)	9, 672
Eco24I	GRGCYC	1 cut(s)	670
Eco47III	AGCGCT	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	707
EcoRII	CCWGG	3 cut(s)	71, 451, 689
EcoT14I	CCWWGG	2 cut(s)	9, 672
EcoT38I	GRGCYC	1 cut(s)	670
ErhI	CCWWGG	2 cut(s)	9, 672
FaeI	CATG	1 cut(s)	632
FaiI	YATR	9 cut(s)	421, 425, 481, 486, 505, 622, 630, 736, 738
FatI	CATG	1 cut(s)	628
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	2 cut(s)	51, 449
FokI	GGATG	2 cut(s)	161, 725
FriOI	GRGCYC	1 cut(s)	670
Fsp4HI	GCNGC	2 cut(s)	51, 449
GlaI	GCGC	2 cut(s)	54, 226
GluI	GCNGC	2 cut(s)	51, 449
GsaI	CCCAGC	2 cut(s)	185, 617
HaeII	RGCGCY	2 cut(s)	56, 228
HaeIII	GGCC	1 cut(s)	633
HapII	CCGG	1 cut(s)	189
HhaI	GCGC	2 cut(s)	55, 227
Hin1II	CATG	1 cut(s)	632
Hin6I	GCGC	2 cut(s)	53, 225
HinP1I	GCGC	2 cut(s)	53, 225
HindIII	AAGCTT	1 cut(s)	292
HinfI	GANTC	5 cut(s)	86, 287, 358, 569, 625
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	2 cut(s)	155, 247
Hpy188I	TCNGA	4 cut(s)	85, 91, 106, 357
Hpy188III	TCNNGA	1 cut(s)	559
HpyAV	CCTTC	2 cut(s)	526, 611
HpyCH4III	ACNGT	2 cut(s)	112, 478
HpyCH4V	TGCA	5 cut(s)	242, 308, 368, 448, 734
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 701
HpyF3I	CTNAG	4 cut(s)	405, 560, 660, 741
Hsp92II	CATG	1 cut(s)	632
HspAI	GCGC	2 cut(s)	53, 225
KpnI	GGTACC	2 cut(s)	477, 531
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	4 cut(s)	127, 201, 337, 463
LmnI	GCTCC	2 cut(s)	190, 673
Lsp1109I	GCAGC	2 cut(s)	62, 460
LweI	GCATC	1 cut(s)	691
MaeIII	GTNAC	2 cut(s)	583, 744
MalI	GATC	4 cut(s)	129, 203, 339, 465
MboI	GATC	4 cut(s)	127, 201, 337, 463
MboII	GAAGA	4 cut(s)	22, 128, 202, 260
MhlI	GDGCHC	2 cut(s)	515, 670
MlsI	TGGCCA	1 cut(s)	633
MluCI	AATT	1 cut(s)	172
MluNI	TGGCCA	1 cut(s)	633
MlyI	GAGTC	2 cut(s)	296, 578
MmeI	TCCRAC	2 cut(s)	247, 664
MnlI	CCTC	7 cut(s)	50, 53, 71, 139, 538, 657, 715
Mox20I	TGGCCA	1 cut(s)	633
MroXI	GAANNNNTTC	1 cut(s)	720
MscI	TGGCCA	1 cut(s)	633
MseI	TTAA	1 cut(s)	378
Msp20I	TGGCCA	1 cut(s)	633
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	4 cut(s)	73, 189, 453, 691
Mva1269I	GAATGC	1 cut(s)	244
MvaI	CCWGG	3 cut(s)	73, 453, 691
MwoI	GCNNNNNNNGC	2 cut(s)	314, 701
NciI	CCSGG	1 cut(s)	189
NdeII	GATC	4 cut(s)	127, 201, 337, 463
NlaIII	CATG	1 cut(s)	632
NlaIV	GGNNCC	4 cut(s)	475, 529, 669, 688
NmuCI	GTSAC	2 cut(s)	583, 744
PctI	GAATGC	1 cut(s)	244
PdmI	GAANNNNTTC	1 cut(s)	720
PfeI	GAWTC	3 cut(s)	86, 358, 625
PkrI	GCNGC	2 cut(s)	52, 450
PleI	GAGTC	2 cut(s)	295, 577
PpsI	GAGTC	2 cut(s)	295, 577
Psp6I	CCWGG	3 cut(s)	71, 451, 689
PspFI	CCCAGC	2 cut(s)	181, 613
PspGI	CCWGG	3 cut(s)	71, 451, 689
PspN4I	GGNNCC	4 cut(s)	475, 529, 669, 688
PsrI	GAACNNNNNNTAC	4 cut(s)	679, 711, 721, 753
RsaI	GTAC	2 cut(s)	475, 529
RsaNI	GTAC	2 cut(s)	474, 528
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	2 cut(s)	51, 449
Sau3AI	GATC	4 cut(s)	127, 201, 337, 463
SchI	GAGTC	2 cut(s)	296, 578
ScrFI	CCNGG	4 cut(s)	73, 189, 453, 691
SduI	GDGCHC	2 cut(s)	515, 670
SetI	ASST	6 cut(s)	187, 296, 400, 518, 648, 678
SfaNI	GCATC	1 cut(s)	691
SfcI	CTRYAG	1 cut(s)	696
Sse9I	AATT	1 cut(s)	172
StyD4I	CCNGG	4 cut(s)	71, 187, 451, 689
StyI	CCWWGG	2 cut(s)	9, 672
TaaI	ACNGT	2 cut(s)	112, 478
TasI	AATT	1 cut(s)	172
TfiI	GAWTC	3 cut(s)	86, 358, 625
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TscAI	CASTG	2 cut(s)	130, 325
TseFI	GTSAC	2 cut(s)	583, 744
TseI	GCWGC	2 cut(s)	50, 448
Tsp45I	GTSAC	2 cut(s)	583, 744
TspDTI	ATGAA	2 cut(s)	617, 729
TspRI	CASTG	2 cut(s)	130, 325
XapI	RAATTY	1 cut(s)	172
XmnI	GAANNNNTTC	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.