Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0010453

Physical Location & Seq

Genomic Coordinates Reverse (-)

3451997 .. 3455992

Gene Structure 3996 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG023700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCGGCCACGTCCCTTAGGGTTTTGCTCCTCGCTCTCCTCCTCATCGCTTCCCCCTTCCTCCAAGTCGCCAGGGGCGAGTCTGACTCTGACTCAGAATCAGATTCCGTATCTGAGGTTGTGGAAGAAAACAGTGATCTTGGGATTGTAGGCGATGATGTCCAGGATTTTGCGGATGCAAGTTTTAGTCCAGCACCAGGAATTGAGACAATTTGTGTTTTCCCCAAAAATAAAGCAAAAACGGTGGCGGCAGGGGAGCAGACTGAACTACTCGTTGGATTGAGAAATGATGGGGAGTCGAGCCTGAATGTGATTGCAGTCAAAGCCAGTGTTCATCTTCCATTTGATCACAACCTGCTGGTTCAGAATCTTACTGCAGTGGCTTTTAACAATGCATCAGTTCCAGCTTCAGCTCAGGCTACCTTTCCATACCTATTTGCTGTCAGCAAGTTCTTGCAGCCTGGAACCTTTGACCTAGTGGGTACCATTATTTATGAGATAGACCAGCAGCCATACCAAAGCACATACTACAATGGTACCATTGAGGTTGTTGAGGCTGGTAGTCTTCTCAGCATCGAGTCTGTTTTCCTTATAACCCTTGGATTTGCTCTTCTCGTCCTCTTGGGGTTATGGATTCACGGTCAAATACAGCACCTTTCTAAGGTAATGAAAATTCACTATGGGATAGTTATATTGCTAAACTCTCTTCAGATATTTTATAAATGCACGCCCCAATCCATCAACCTAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006605 GO:0006612 GO:0006613 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031090 GO:0031976 GO:0031984 GO:0033036 GO:0034357 GO:0034613 GO:0042175 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090150 GO:0098588 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

TRAP_alpha

Protein Analysis

250

Amino Acids

26.96

Weight (kDa)

4.49

Isoelectric Point (pI)

53.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAP_alpha	PF03896	78 - 213	3.5e-10	Translocon-associated protein (TRAP), alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21160 AT2G21160
fragaria_vesca	FvH4_2g01990 FvH4_2g01990
malus_domestica	MD10G1118300.v1.1 MD10G1118400.v1.1
prunus_persica	Prupe.8G160800_v2.0.a1
pyrus_communis	pycom10g10220 pycom10g10230 pycom10g10240
rosa_chinensis	RchiOBHm_Chr6g0245171
rosa_laevigata	RLG00000015319
rosa_multiflora	Rmu_sc0001288.1_g000003 Rmu_sc0015012.1_g000002
rosa_roxburghii	Rroxscaffold_7G00215390
rosa_rugosa	Rorug05G0512500
rosa_samantha	Rh6AG027600 Rh6BG023700 Rh6CG022100 Rh6DG022200
rosa_wichuraiana	Rw6G002330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	593, 720
Acc36I	ACCTGC	1 cut(s)	363
Acc65I	GGTACC	2 cut(s)	482, 536
AccB1I	GGYRCC	2 cut(s)	482, 536
AciI	CCGC	3 cut(s)	5, 173, 248
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	672
AcuI	CTGAAG	2 cut(s)	393, 692
AfaI	GTAC	2 cut(s)	484, 538
AfiI	CCNNNNNNNGG	2 cut(s)	197, 661
AjiI	CACGTC	1 cut(s)	12
AjnI	CCWGG	4 cut(s)	71, 162, 196, 460
AjuI	GAANNNNNNNTTGG	2 cut(s)	258, 290
AluBI	AGCT	2 cut(s)	407, 413
AluI	AGCT	2 cut(s)	407, 413
Alw26I	GTCTC	1 cut(s)	200
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	2 cut(s)	457, 508
ApoI	RAATTY	1 cut(s)	672
Asp718I	GGTACC	2 cut(s)	482, 536
AxyI	CCTNAGG	1 cut(s)	17
BaeI	ACNNNNGTAYC	2 cut(s)	520, 553
BanI	GGYRCC	2 cut(s)	482, 536
BbsI	GAAGAC	1 cut(s)	557
BbvI	GCAGC	2 cut(s)	469, 520
BccI	CCATC	2 cut(s)	284, 746
BciT130I	CCWGG	4 cut(s)	73, 164, 198, 462
BclI	TGATCA	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	2 cut(s)	476, 746
BfmI	CTRYAG	1 cut(s)	375
BfuAI	ACCTGC	1 cut(s)	363
BisI	GCNGC	4 cut(s)	6, 249, 458, 509
BlsI	GCNGC	4 cut(s)	7, 250, 459, 510
Bme1390I	CCNGG	4 cut(s)	73, 164, 198, 462
BmgBI	CACGTC	1 cut(s)	12
BmiI	GGNNCC	3 cut(s)	466, 484, 538
BmrFI	CCNGG	4 cut(s)	73, 164, 198, 462
BmsI	GCATC	3 cut(s)	166, 404, 582
BpiI	GAAGAC	1 cut(s)	557
BplI	GAGNNNNNCTC	2 cut(s)	71, 103
Bpu10I	CCTNAGC	1 cut(s)	414
BsaJI	CCNNGG	2 cut(s)	72, 598
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 661
Bse1I	ACTGG	1 cut(s)	327
Bse21I	CCTNAGG	1 cut(s)	17
BseBI	CCWGG	4 cut(s)	73, 164, 198, 462
BseDI	CCNNGG	2 cut(s)	72, 598
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	2 cut(s)	197, 661
BseMII	CTCAG	4 cut(s)	105, 108, 428, 583
BseNI	ACTGG	1 cut(s)	327
BseRI	GAGGAG	3 cut(s)	20, 29, 32
BseXI	GCAGC	2 cut(s)	469, 520
BshFI	GGCC	1 cut(s)	8
BshNI	GGYRCC	2 cut(s)	482, 536
BslI	CCNNNNNNNGG	2 cut(s)	197, 661
BsmAI	GTCTC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	136, 346
BspACI	CCGC	3 cut(s)	5, 173, 248
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	4 cut(s)	106, 107, 427, 582
BspLI	GGNNCC	3 cut(s)	466, 484, 538
BspMAI	CTGCAG	1 cut(s)	379
BspMI	ACCTGC	1 cut(s)	363
BspQI	GCTCTTC	1 cut(s)	615
BspT107I	GGYRCC	2 cut(s)	482, 536
BsrI	ACTGG	1 cut(s)	327
BssECI	CCNNGG	2 cut(s)	72, 598
BssMI	GATC	2 cut(s)	136, 346
BssT1I	CCWWGG	1 cut(s)	598
Bst2UI	CCWGG	4 cut(s)	73, 164, 198, 462
Bst4CI	ACNGT	3 cut(s)	134, 244, 641
Bst6I	CTCTTC	2 cut(s)	615, 711
BstC8I	GCNNGC	1 cut(s)	728
BstDEI	CTNAG	6 cut(s)	17, 94, 114, 414, 569, 660
BstENI	CCTNNNNNAGG	1 cut(s)	659
BstF5I	GGATG	1 cut(s)	181
BstKTI	GATC	2 cut(s)	139, 349
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	2 cut(s)	136, 346
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstNI	CCWGG	4 cut(s)	73, 164, 198, 462
BstSCI	CCNGG	4 cut(s)	71, 162, 196, 460
BstSFI	CTRYAG	1 cut(s)	375
BstV1I	GCAGC	2 cut(s)	469, 520
BstV2I	GAAGAC	1 cut(s)	557
Bsu36I	CCTNAGG	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	8
BtgZI	GCGATG	2 cut(s)	31, 168
BtrI	CACGTC	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	181
BtsI	GCAGTG	1 cut(s)	384
BtsIMutI	CAGTG	3 cut(s)	139, 334, 384
BveI	ACCTGC	1 cut(s)	363
Cac8I	GCNNGC	1 cut(s)	728
Csp6I	GTAC	2 cut(s)	483, 537
CspCI	CAANNNNNGTGG	2 cut(s)	225, 260
CviQI	GTAC	2 cut(s)	483, 537
DdeI	CTNAG	6 cut(s)	17, 94, 114, 414, 569, 660
DpnI	GATC	2 cut(s)	138, 348
DpnII	GATC	2 cut(s)	136, 346
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	2 cut(s)	615, 711
EarI	CTCTTC	2 cut(s)	615, 711
Eco130I	CCWWGG	1 cut(s)	598
Eco57I	CTGAAG	2 cut(s)	393, 692
Eco81I	CCTNAGG	1 cut(s)	17
EcoNI	CCTNNNNNAGG	1 cut(s)	659
EcoRII	CCWGG	4 cut(s)	71, 162, 196, 460
EcoT14I	CCWWGG	1 cut(s)	598
EcoT22I	ATGCAT	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	598
FaiI	YATR	9 cut(s)	430, 495, 514, 526, 593, 631, 681, 692, 720
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	4 cut(s)	6, 249, 458, 509
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	4 cut(s)	6, 249, 458, 509
FspBI	CTAG	2 cut(s)	476, 746
GluI	GCNGC	4 cut(s)	6, 249, 458, 509
HaeIII	GGCC	1 cut(s)	8
HinfI	GANTC	9 cut(s)	80, 86, 92, 98, 104, 296, 367, 578, 634
Hpy188I	TCNGA	7 cut(s)	85, 91, 97, 103, 115, 366, 711
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	3 cut(s)	134, 244, 641
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	6 cut(s)	179, 317, 377, 395, 457, 726
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	6 cut(s)	17, 94, 114, 414, 569, 660
HpySE526I	ACGT	1 cut(s)	11
KpnI	GGTACC	2 cut(s)	486, 540
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	2 cut(s)	136, 346
LguI	GCTCTTC	1 cut(s)	615
LmnI	GCTCC	2 cut(s)	33, 256
Lsp1109I	GCAGC	2 cut(s)	469, 520
LweI	GCATC	3 cut(s)	166, 404, 582
MaeI	CTAG	2 cut(s)	476, 746
MaeII	ACGT	1 cut(s)	11
MalI	GATC	2 cut(s)	138, 348
MboI	GATC	2 cut(s)	136, 346
MboII	GAAGA	5 cut(s)	137, 329, 557, 602, 698
MluCI	AATT	3 cut(s)	201, 210, 672
MlyI	GAGTC	5 cut(s)	80, 86, 89, 305, 587
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	8 cut(s)	41, 50, 53, 71, 109, 538, 547, 629
Mph1103I	ATGCAT	1 cut(s)	397
MseI	TTAA	1 cut(s)	387
MspR9I	CCNGG	4 cut(s)	73, 164, 198, 462
MvaI	CCWGG	4 cut(s)	73, 164, 198, 462
MwoI	GCNNNNNNNGC	1 cut(s)	323
NdeII	GATC	2 cut(s)	136, 346
NlaIV	GGNNCC	3 cut(s)	466, 484, 538
NsiI	ATGCAT	1 cut(s)	397
PciSI	GCTCTTC	1 cut(s)	615
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	4 cut(s)	98, 104, 367, 634
PfoI	TCCNGGA	1 cut(s)	162
PkrI	GCNGC	4 cut(s)	7, 250, 459, 510
PleI	GAGTC	5 cut(s)	80, 86, 88, 304, 586
PpsI	GAGTC	5 cut(s)	80, 86, 88, 304, 586
PsiI	TTATAA	2 cut(s)	593, 720
Psp6I	CCWGG	4 cut(s)	71, 162, 196, 460
PspGI	CCWGG	4 cut(s)	71, 162, 196, 460
PspN4I	GGNNCC	3 cut(s)	466, 484, 538
PstI	CTGCAG	1 cut(s)	379
RsaI	GTAC	2 cut(s)	484, 538
RsaNI	GTAC	2 cut(s)	483, 537
SapI	GCTCTTC	1 cut(s)	615
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	4 cut(s)	6, 249, 458, 509
Sau3AI	GATC	2 cut(s)	136, 346
SchI	GAGTC	5 cut(s)	80, 86, 89, 305, 587
ScrFI	CCNGG	4 cut(s)	73, 164, 198, 462
SfaNI	GCATC	3 cut(s)	166, 404, 582
SfcI	CTRYAG	1 cut(s)	375
Sse9I	AATT	3 cut(s)	201, 210, 672
SsiI	CCGC	3 cut(s)	5, 173, 248
SspMI	CTAG	2 cut(s)	476, 746
StyD4I	CCNGG	4 cut(s)	71, 162, 196, 460
StyI	CCWWGG	1 cut(s)	598
TaaI	ACNGT	3 cut(s)	134, 244, 641
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	2 cut(s)	299, 576
TasI	AATT	3 cut(s)	201, 210, 672
TauI	GCSGC	2 cut(s)	8, 251
TfiI	GAWTC	4 cut(s)	98, 104, 367, 634
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	3 cut(s)	139, 334, 384
TseI	GCWGC	2 cut(s)	457, 508
TspDTI	ATGAA	2 cut(s)	323, 683
TspGWI	ACGGA	1 cut(s)	97
TspRI	CASTG	3 cut(s)	139, 334, 384
XagI	CCTNNNNNAGG	1 cut(s)	659
XapI	RAATTY	1 cut(s)	672
XspI	CTAG	2 cut(s)	476, 746
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.