Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010453

Physical Location & Seq

Genomic Coordinates Reverse (-)

1104952 .. 1109597

Gene Structure 4646 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21973

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCGGCCACGTCCCTTAGGGTTTTGCTCCTCGCTCTCCTCCTCATCGCTTCCCCCTTCCTCCAAGTCGCCAGGGGCGAGTCTGACTCTGACTCAGAATCAGAATCAGATTCCGTATCTGAGGTTGTGGAAGAAAACAGTGATCTTGGGATTGTAGGCGATGATGTCCAGGATTTTGCGGATGCAAGTTTTAGTCCAGCACCAGGAATTGAGACAATCTGTGTTTTCCCCAAAAATAAAGCAAAAACGGTGGCGGCAGGGGAGCAGACTGAACTACTCGTTGGATTGAGAAATGATGGGGAGTCGAGCCTGAATGTGATTGCAGTCAAAGCCAGTGTTCATCTTCCATTTGATCACAACCTGCTGGTTCAGAATCTTACTGCAGTGGCTTTTAACAATGCATCAGTTCCAGCTTCAGCTCAGGCTACCTTTCCATACCTATTTGCTGTCAGCAAGTTCTTGCAGCCTGGAACCTTTGACCTAGTGGGTACCATTATTTATGAGATAGACCAGCAGCCATACCAAAGCACATACTACAATGGTACCATTGAGGTTGTTGAGGCTGGTAGTCTTCTCAGCATCGAGTCTGTTTTCCTTATAACCCTTGGATTTGCTCTTCTCGTCCTCTTGGGGTTATGGATTCACGGTCAAATACAGCACCTTTCTAAGAAAACCAAGAGGGCTCCCAAGGTGGAAGTTGGAACCAGGTCTACAGATGCCAACATGGATGAATGGCTTCAGGGAACAGCATATACTCAGTCACTCAACAATAAGTCCAAGAAGAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006605 GO:0006612 GO:0006613 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031090 GO:0031976 GO:0031984 GO:0033036 GO:0034357 GO:0034613 GO:0042175 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090150 GO:0098588 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

TRAP_alpha

Protein Analysis

263

Amino Acids

28.35

Weight (kDa)

4.79

Isoelectric Point (pI)

50.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAP_alpha	PF03896	80 - 246	2.6e-12	Translocon-associated protein (TRAP), alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21160 AT2G21160
fragaria_vesca	FvH4_2g01990 FvH4_2g01990
malus_domestica	MD10G1118300.v1.1 MD10G1118400.v1.1
prunus_persica	Prupe.8G160800_v2.0.a1
pyrus_communis	pycom10g10220 pycom10g10230 pycom10g10240
rosa_chinensis	RchiOBHm_Chr6g0245171
rosa_laevigata	RLG00000015319
rosa_multiflora	Rmu_sc0001288.1_g000003 Rmu_sc0015012.1_g000002
rosa_roxburghii	Rroxscaffold_7G00215390
rosa_rugosa	Rorug05G0512500
rosa_samantha	Rh6AG027600 Rh6BG023700 Rh6CG022100 Rh6DG022200
rosa_wichuraiana	Rw6G002330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	599
Acc36I	ACCTGC	1 cut(s)	369
Acc65I	GGTACC	2 cut(s)	488, 542
AccB1I	GGYRCC	2 cut(s)	488, 542
AccI	GTMKAC	1 cut(s)	710
AciI	CCGC	3 cut(s)	5, 179, 254
AcoI	YGGCCR	1 cut(s)	6
AcuI	CTGAAG	2 cut(s)	399, 722
AfaI	GTAC	2 cut(s)	490, 544
AfiI	CCNNNNNNNGG	1 cut(s)	203
AjiI	CACGTC	1 cut(s)	12
AjnI	CCWGG	5 cut(s)	71, 168, 202, 466, 704
AjuI	GAANNNNNNNTTGG	2 cut(s)	264, 296
AluBI	AGCT	2 cut(s)	413, 419
AluI	AGCT	2 cut(s)	413, 419
Alw26I	GTCTC	1 cut(s)	206
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	2 cut(s)	463, 514
Asp700I	GAANNNNTTC	1 cut(s)	735
Asp718I	GGTACC	2 cut(s)	488, 542
AxyI	CCTNAGG	1 cut(s)	17
BaeI	ACNNNNGTAYC	2 cut(s)	526, 559
BanI	GGYRCC	2 cut(s)	488, 542
BanII	GRGCYC	1 cut(s)	685
BbsI	GAAGAC	1 cut(s)	563
BbvI	GCAGC	2 cut(s)	475, 526
BccI	CCATC	1 cut(s)	290
BciT130I	CCWGG	5 cut(s)	73, 170, 204, 468, 706
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	1 cut(s)	482
BfmI	CTRYAG	2 cut(s)	381, 711
BfuAI	ACCTGC	1 cut(s)	369
BisI	GCNGC	4 cut(s)	6, 255, 464, 515
BlsI	GCNGC	4 cut(s)	7, 256, 465, 516
Bme1390I	CCNGG	5 cut(s)	73, 170, 204, 468, 706
BmgBI	CACGTC	1 cut(s)	12
BmiI	GGNNCC	5 cut(s)	472, 490, 544, 684, 703
BmrFI	CCNGG	5 cut(s)	73, 170, 204, 468, 706
BmsI	GCATC	4 cut(s)	172, 410, 588, 706
BpiI	GAAGAC	1 cut(s)	563
BplI	GAGNNNNNCTC	2 cut(s)	71, 103
Bpu10I	CCTNAGC	1 cut(s)	420
BsaJI	CCNNGG	3 cut(s)	72, 604, 687
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	333
Bse21I	CCTNAGG	1 cut(s)	17
BseBI	CCWGG	5 cut(s)	73, 170, 204, 468, 706
BseDI	CCNNGG	3 cut(s)	72, 604, 687
BseGI	GGATG	2 cut(s)	187, 733
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMII	CTCAG	5 cut(s)	108, 111, 434, 589, 770
BseNI	ACTGG	1 cut(s)	333
BseRI	GAGGAG	3 cut(s)	20, 29, 32
BseXI	GCAGC	2 cut(s)	475, 526
BshFI	GGCC	1 cut(s)	8
BshNI	GGYRCC	2 cut(s)	488, 542
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	685
Bsp143I	GATC	2 cut(s)	142, 352
BspACI	CCGC	3 cut(s)	5, 179, 254
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	5 cut(s)	107, 112, 433, 588, 769
BspLI	GGNNCC	5 cut(s)	472, 490, 544, 684, 703
BspMAI	CTGCAG	1 cut(s)	385
BspMI	ACCTGC	1 cut(s)	369
BspQI	GCTCTTC	1 cut(s)	621
BspT107I	GGYRCC	2 cut(s)	488, 542
BsrI	ACTGG	1 cut(s)	333
BssECI	CCNNGG	3 cut(s)	72, 604, 687
BssMI	GATC	2 cut(s)	142, 352
BssT1I	CCWWGG	2 cut(s)	604, 687
Bst2UI	CCWGG	5 cut(s)	73, 170, 204, 468, 706
Bst4CI	ACNGT	3 cut(s)	140, 250, 647
Bst6I	CTCTTC	1 cut(s)	621
BstDEI	CTNAG	7 cut(s)	17, 94, 120, 420, 575, 666, 756
BstF5I	GGATG	2 cut(s)	187, 733
BstKTI	GATC	2 cut(s)	145, 355
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	2 cut(s)	142, 352
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstNI	CCWGG	5 cut(s)	73, 170, 204, 468, 706
BstSCI	CCNGG	5 cut(s)	71, 168, 202, 466, 704
BstSFI	CTRYAG	2 cut(s)	381, 711
BstV1I	GCAGC	2 cut(s)	475, 526
BstV2I	GAAGAC	1 cut(s)	563
Bsu36I	CCTNAGG	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	8
BtgZI	GCGATG	2 cut(s)	31, 174
BtrI	CACGTC	1 cut(s)	12
BtsCI	GGATG	2 cut(s)	187, 733
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	3 cut(s)	145, 340, 390
BveI	ACCTGC	1 cut(s)	369
CsiI	ACCWGGT	1 cut(s)	704
Csp6I	GTAC	2 cut(s)	489, 543
CspCI	CAANNNNNGTGG	2 cut(s)	231, 266
CviAII	CATG	1 cut(s)	724
CviQI	GTAC	2 cut(s)	489, 543
DdeI	CTNAG	7 cut(s)	17, 94, 120, 420, 575, 666, 756
DpnI	GATC	2 cut(s)	144, 354
DpnII	GATC	2 cut(s)	142, 352
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	621
EarI	CTCTTC	1 cut(s)	621
Eco130I	CCWWGG	2 cut(s)	604, 687
Eco24I	GRGCYC	1 cut(s)	685
Eco57I	CTGAAG	2 cut(s)	399, 722
Eco81I	CCTNAGG	1 cut(s)	17
EcoRII	CCWGG	5 cut(s)	71, 168, 202, 466, 704
EcoT14I	CCWWGG	2 cut(s)	604, 687
EcoT22I	ATGCAT	1 cut(s)	403
EcoT38I	GRGCYC	1 cut(s)	685
ErhI	CCWWGG	2 cut(s)	604, 687
FaeI	CATG	1 cut(s)	727
FaiI	YATR	9 cut(s)	436, 501, 520, 532, 599, 637, 725, 751, 753
FatI	CATG	1 cut(s)	723
FbaI	TGATCA	1 cut(s)	352
FblI	GTMKAC	1 cut(s)	710
Fnu4HI	GCNGC	4 cut(s)	6, 255, 464, 515
FokI	GGATG	2 cut(s)	194, 740
FriOI	GRGCYC	1 cut(s)	685
Fsp4HI	GCNGC	4 cut(s)	6, 255, 464, 515
FspBI	CTAG	1 cut(s)	482
GluI	GCNGC	4 cut(s)	6, 255, 464, 515
HaeIII	GGCC	1 cut(s)	8
Hin1II	CATG	1 cut(s)	727
Hpy166II	GTNNAC	1 cut(s)	711
Hpy188I	TCNGA	7 cut(s)	85, 91, 97, 103, 109, 121, 372
Hpy8I	GTNNAC	1 cut(s)	711
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	3 cut(s)	140, 250, 647
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	5 cut(s)	185, 323, 383, 401, 463
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpyF3I	CTNAG	7 cut(s)	17, 94, 120, 420, 575, 666, 756
HpySE526I	ACGT	1 cut(s)	11
Hsp92II	CATG	1 cut(s)	727
KpnI	GGTACC	2 cut(s)	492, 546
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	2 cut(s)	142, 352
LguI	GCTCTTC	1 cut(s)	621
LmnI	GCTCC	3 cut(s)	33, 262, 688
Lsp1109I	GCAGC	2 cut(s)	475, 526
LweI	GCATC	4 cut(s)	172, 410, 588, 706
MabI	ACCWGGT	1 cut(s)	704
MaeI	CTAG	1 cut(s)	482
MaeII	ACGT	1 cut(s)	11
MaeIII	GTNAC	1 cut(s)	759
MalI	GATC	2 cut(s)	144, 354
MboI	GATC	2 cut(s)	142, 352
MboII	GAAGA	4 cut(s)	143, 335, 563, 608
MhlI	GDGCHC	1 cut(s)	685
MluCI	AATT	1 cut(s)	207
MlyI	GAGTC	5 cut(s)	80, 86, 89, 311, 593
MmeI	TCCRAC	2 cut(s)	262, 679
MnlI	CCTC	9 cut(s)	41, 50, 53, 71, 115, 544, 553, 635, 672
Mph1103I	ATGCAT	1 cut(s)	403
MroXI	GAANNNNTTC	1 cut(s)	735
MseI	TTAA	1 cut(s)	393
MspR9I	CCNGG	5 cut(s)	73, 170, 204, 468, 706
MvaI	CCWGG	5 cut(s)	73, 170, 204, 468, 706
MwoI	GCNNNNNNNGC	1 cut(s)	329
NdeII	GATC	2 cut(s)	142, 352
NlaIII	CATG	1 cut(s)	727
NlaIV	GGNNCC	5 cut(s)	472, 490, 544, 684, 703
NmuCI	GTSAC	1 cut(s)	759
NsiI	ATGCAT	1 cut(s)	403
PciSI	GCTCTTC	1 cut(s)	621
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	735
PfeI	GAWTC	5 cut(s)	98, 104, 110, 373, 640
PfoI	TCCNGGA	1 cut(s)	168
PkrI	GCNGC	4 cut(s)	7, 256, 465, 516
PleI	GAGTC	5 cut(s)	80, 86, 88, 310, 592
PpsI	GAGTC	5 cut(s)	80, 86, 88, 310, 592
PsiI	TTATAA	1 cut(s)	599
Psp6I	CCWGG	5 cut(s)	71, 168, 202, 466, 704
PspGI	CCWGG	5 cut(s)	71, 168, 202, 466, 704
PspN4I	GGNNCC	5 cut(s)	472, 490, 544, 684, 703
PsrI	GAACNNNNNNTAC	4 cut(s)	694, 726, 736, 768
PstI	CTGCAG	1 cut(s)	385
RsaI	GTAC	2 cut(s)	490, 544
RsaNI	GTAC	2 cut(s)	489, 543
SapI	GCTCTTC	1 cut(s)	621
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	4 cut(s)	6, 255, 464, 515
Sau3AI	GATC	2 cut(s)	142, 352
SchI	GAGTC	5 cut(s)	80, 86, 89, 311, 593
ScrFI	CCNGG	5 cut(s)	73, 170, 204, 468, 706
SduI	GDGCHC	1 cut(s)	685
SexAI	ACCWGGT	1 cut(s)	704
SfaNI	GCATC	4 cut(s)	172, 410, 588, 706
SfcI	CTRYAG	2 cut(s)	381, 711
Sse9I	AATT	1 cut(s)	207
SsiI	CCGC	3 cut(s)	5, 179, 254
SspMI	CTAG	1 cut(s)	482
StyD4I	CCNGG	5 cut(s)	71, 168, 202, 466, 704
StyI	CCWWGG	2 cut(s)	604, 687
TaaI	ACNGT	3 cut(s)	140, 250, 647
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	2 cut(s)	305, 582
TasI	AATT	1 cut(s)	207
TauI	GCSGC	2 cut(s)	8, 257
TfiI	GAWTC	5 cut(s)	98, 104, 110, 373, 640
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TscAI	CASTG	3 cut(s)	145, 340, 390
TseFI	GTSAC	1 cut(s)	759
TseI	GCWGC	2 cut(s)	463, 514
Tsp45I	GTSAC	1 cut(s)	759
TspDTI	ATGAA	2 cut(s)	329, 744
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	3 cut(s)	145, 340, 390
XmiI	GTMKAC	1 cut(s)	710
XmnI	GAANNNNTTC	1 cut(s)	735
XspI	CTAG	1 cut(s)	482
Zsp2I	ATGCAT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.