Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0010453

Physical Location & Seq

Genomic Coordinates Forward (+)

19576541 .. 19580214

Gene Structure 3674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1118300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCGACCAGCACGATAAGGGTTCTTCTCCTCGCTCTCCTCCTCATCGCATCCCCTTTCCTCCAAGTCGCCAGGGGCCAGTCTGACTCGGAAGTGGATGCTTCTGACACCGTGGAAGAAAGCAGTGATCTTGGAATTGTTGGCGAGGATGTCCAAGATTTTGGAGACGGAAGTTTTAGCCCAGCTCCCGGAGTTGATACAATCTGTGTCTTCCCCAAAAACATCGCTAAAACGGTGGCGGCAGGGGAAGAGACTGAATTACTGGTTGGTCTGAAAAATGATGGGGAGTCGAGCCTGAATGTGATTGCAATCAAAGCTAGCGTTCATCTTCCTTTTGATCACAATCTGCTGGTTCAGAATCTTACTGCCCAGTTTCACTTACAGATGTGGTTTAACTGTAGGCATTTTAACAATGGATCTGTTCCAGCTTCGGCCCAGGCTACTTTCCCATACATATTTGCTGTCAGCAAGTTCTTACAGCCTGGCGCTTTTGATCTTGTGGGTACCATTTATTATGAGATAGACCAGCAACCATACCAGAGCACCTTCTACAATGGTACTATCGAAGTTGTTGAGGCCTGGTGCTATGCTCAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006605 GO:0006612 GO:0006613 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031090 GO:0031976 GO:0031984 GO:0033036 GO:0034357 GO:0034613 GO:0042175 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090150 GO:0098588 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

TRAP_alpha

Protein Analysis

200

Amino Acids

21.67

Weight (kDa)

4.36

Isoelectric Point (pI)

48.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21160 AT2G21160
fragaria_vesca	FvH4_2g01990 FvH4_2g01990
malus_domestica	MD10G1118300.v1.1 MD10G1118400.v1.1
prunus_persica	Prupe.8G160800_v2.0.a1
pyrus_communis	pycom10g10220 pycom10g10230 pycom10g10240
rosa_chinensis	RchiOBHm_Chr6g0245171
rosa_laevigata	RLG00000015319
rosa_multiflora	Rmu_sc0001288.1_g000003 Rmu_sc0015012.1_g000002
rosa_roxburghii	Rroxscaffold_7G00215390
rosa_rugosa	Rorug05G0512500
rosa_samantha	Rh6AG027600 Rh6BG023700 Rh6CG022100 Rh6DG022200
rosa_wichuraiana	Rw6G002330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	503
AccB1I	GGYRCC	1 cut(s)	503
AciI	CCGC	1 cut(s)	239
AclWI	GGATC	1 cut(s)	424
AfaI	GTAC	2 cut(s)	505, 559
AfiI	CCNNNNNNNGG	1 cut(s)	188
AjnI	CCWGG	4 cut(s)	71, 435, 481, 578
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	3 cut(s)	185, 317, 428
AluI	AGCT	3 cut(s)	185, 317, 428
Alw21I	GWGCWC	1 cut(s)	545
Alw26I	GTCTC	2 cut(s)	159, 245
AlwI	GGATC	1 cut(s)	424
AoxI	GGCC	3 cut(s)	76, 432, 576
Asp718I	GGTACC	1 cut(s)	503
AspLEI	GCGC	1 cut(s)	488
AspS9I	GGNCC	2 cut(s)	76, 433
AsuC2I	CCSGG	1 cut(s)	189
AsuNHI	GCTAGC	1 cut(s)	317
BanI	GGYRCC	1 cut(s)	503
BbsI	GAAGAC	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	545
BccI	CCATC	1 cut(s)	275
BciT130I	CCWGG	4 cut(s)	73, 437, 483, 580
BclI	TGATCA	1 cut(s)	337
BcnI	CCSGG	1 cut(s)	189
BcoDI	GTCTC	2 cut(s)	159, 245
BfaI	CTAG	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	397
BfoI	RGCGCY	1 cut(s)	489
BisI	GCNGC	1 cut(s)	240
BlpI	GCTNAGC	1 cut(s)	591
BlsI	GCNGC	1 cut(s)	241
Bme1390I	CCNGG	5 cut(s)	73, 189, 437, 483, 580
BmgT120I	GGNCC	2 cut(s)	76, 433
BmiI	GGNNCC	2 cut(s)	77, 505
BmrFI	CCNGG	5 cut(s)	73, 189, 437, 483, 580
BmrI	ACTGGG	1 cut(s)	364
BmsI	GCATC	2 cut(s)	59, 88
BmtI	GCTAGC	1 cut(s)	321
BmuI	ACTGGG	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	202
Bpu1102I	GCTNAGC	1 cut(s)	591
BpuMI	CCSGG	1 cut(s)	189
BsaBI	GATNNNNATC	2 cut(s)	308, 342
BsaJI	CCNNGG	3 cut(s)	72, 111, 435
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	3 cut(s)	79, 267, 370
Bse8I	GATNNNNATC	2 cut(s)	308, 342
BseBI	CCWGG	4 cut(s)	73, 437, 483, 580
BseDI	CCNNGG	3 cut(s)	72, 111, 435
BseGI	GGATG	3 cut(s)	50, 103, 154
BseJI	GATNNNNATC	2 cut(s)	308, 342
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseNI	ACTGG	3 cut(s)	79, 267, 370
BseRI	GAGGAG	3 cut(s)	20, 29, 32
BseYI	CCCAGC	1 cut(s)	181
BshFI	GGCC	3 cut(s)	78, 434, 578
BshNI	GGYRCC	1 cut(s)	503
BsiHKAI	GWGCWC	1 cut(s)	545
BsiSI	CCGG	1 cut(s)	189
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	2 cut(s)	159, 245
BsmBI	CGTCTC	1 cut(s)	159
BsnI	GGCC	3 cut(s)	78, 434, 578
Bsp1286I	GDGCHC	1 cut(s)	545
Bsp143I	GATC	4 cut(s)	127, 337, 416, 493
Bsp1720I	GCTNAGC	1 cut(s)	591
BspACI	CCGC	1 cut(s)	239
BspANI	GGCC	3 cut(s)	78, 434, 578
BspLI	GGNNCC	2 cut(s)	77, 505
BspOI	GCTAGC	1 cut(s)	321
BspPI	GGATC	1 cut(s)	424
BspT107I	GGYRCC	1 cut(s)	503
BsrI	ACTGG	3 cut(s)	79, 267, 370
BssECI	CCNNGG	3 cut(s)	72, 111, 435
BssMI	GATC	4 cut(s)	127, 337, 416, 493
Bst2UI	CCWGG	4 cut(s)	73, 437, 483, 580
Bst4CI	ACNGT	3 cut(s)	112, 235, 398
Bst6I	CTCTTC	1 cut(s)	243
BstC8I	GCNNGC	1 cut(s)	319
BstDEI	CTNAG	1 cut(s)	591
BstDSI	CCRYGG	1 cut(s)	111
BstF5I	GGATG	3 cut(s)	50, 103, 154
BstH2I	RGCGCY	1 cut(s)	489
BstHHI	GCGC	1 cut(s)	488
BstKTI	GATC	4 cut(s)	130, 340, 419, 496
BstMAI	GTCTC	2 cut(s)	159, 245
BstMBI	GATC	4 cut(s)	127, 337, 416, 493
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstNI	CCWGG	4 cut(s)	73, 437, 483, 580
BstSCI	CCNGG	5 cut(s)	71, 187, 435, 481, 578
BstSFI	CTRYAG	1 cut(s)	397
BstV2I	GAAGAC	1 cut(s)	202
BstX2I	RGATCY	1 cut(s)	416
BstXI	CCANNNNNNTGG	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	416
BsuRI	GGCC	3 cut(s)	78, 434, 578
BtgI	CCRYGG	1 cut(s)	111
BtgZI	GCGATG	2 cut(s)	31, 208
BtsCI	GGATG	3 cut(s)	50, 103, 154
BtsI	GCAGTG	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	319
CfoI	GCGC	1 cut(s)	488
Cfr13I	GGNCC	2 cut(s)	76, 433
Csp6I	GTAC	2 cut(s)	504, 558
CviQI	GTAC	2 cut(s)	504, 558
DdeI	CTNAG	1 cut(s)	591
DpnI	GATC	4 cut(s)	129, 339, 418, 495
DpnII	GATC	4 cut(s)	127, 337, 416, 493
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Eco147I	AGGCCT	1 cut(s)	578
EcoRII	CCWGG	4 cut(s)	71, 435, 481, 578
Esp3I	CGTCTC	1 cut(s)	159
FaiI	YATR	5 cut(s)	451, 455, 516, 535, 588
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	3 cut(s)	37, 110, 161
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	1 cut(s)	487
GluI	GCNGC	1 cut(s)	240
GsaI	CCCAGC	1 cut(s)	185
HaeII	RGCGCY	1 cut(s)	489
HaeIII	GGCC	3 cut(s)	78, 434, 578
HapII	CCGG	1 cut(s)	189
HhaI	GCGC	1 cut(s)	488
Hin6I	GCGC	1 cut(s)	486
HinP1I	GCGC	1 cut(s)	486
HinfI	GANTC	3 cut(s)	86, 287, 358
HpaII	CCGG	1 cut(s)	189
Hpy188I	TCNGA	5 cut(s)	85, 91, 106, 273, 357
HpyAV	CCTTC	1 cut(s)	556
HpyCH4III	ACNGT	3 cut(s)	112, 235, 398
HpyCH4V	TGCA	1 cut(s)	308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpyF3I	CTNAG	1 cut(s)	591
HspAI	GCGC	1 cut(s)	486
KpnI	GGTACC	1 cut(s)	507
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	4 cut(s)	127, 337, 416, 493
LmnI	GCTCC	1 cut(s)	190
LweI	GCATC	2 cut(s)	59, 88
MaeI	CTAG	1 cut(s)	318
MalI	GATC	4 cut(s)	129, 339, 418, 495
MboI	GATC	4 cut(s)	127, 337, 416, 493
MboII	GAAGA	5 cut(s)	17, 128, 202, 260, 320
MflI	RGATCY	1 cut(s)	416
MhlI	GDGCHC	1 cut(s)	545
MluCI	AATT	2 cut(s)	135, 257
MlyI	GAGTC	2 cut(s)	80, 296
MnlI	CCTC	6 cut(s)	41, 50, 53, 71, 139, 568
MseI	TTAA	2 cut(s)	393, 408
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	5 cut(s)	73, 189, 437, 483, 580
MvaI	CCWGG	4 cut(s)	73, 437, 483, 580
MwoI	GCNNNNNNNGC	1 cut(s)	314
NciI	CCSGG	1 cut(s)	189
NdeII	GATC	4 cut(s)	127, 337, 416, 493
NheI	GCTAGC	1 cut(s)	317
NlaIV	GGNNCC	2 cut(s)	77, 505
PceI	AGGCCT	1 cut(s)	578
PfeI	GAWTC	1 cut(s)	358
PfoI	TCCNGGA	1 cut(s)	187
PkrI	GCNGC	1 cut(s)	241
PleI	GAGTC	2 cut(s)	80, 295
PpsI	GAGTC	2 cut(s)	80, 295
Psp6I	CCWGG	4 cut(s)	71, 435, 481, 578
PspFI	CCCAGC	1 cut(s)	181
PspGI	CCWGG	4 cut(s)	71, 435, 481, 578
PspN4I	GGNNCC	2 cut(s)	77, 505
PspPI	GGNCC	2 cut(s)	76, 433
PsuI	RGATCY	1 cut(s)	416
RsaI	GTAC	2 cut(s)	505, 559
RsaNI	GTAC	2 cut(s)	504, 558
SaqAI	TTAA	2 cut(s)	393, 408
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	4 cut(s)	127, 337, 416, 493
Sau96I	GGNCC	2 cut(s)	76, 433
SchI	GAGTC	2 cut(s)	80, 296
ScrFI	CCNGG	5 cut(s)	73, 189, 437, 483, 580
SduI	GDGCHC	1 cut(s)	545
SetI	ASST	4 cut(s)	187, 319, 430, 548
SfaNI	GCATC	2 cut(s)	59, 88
SfcI	CTRYAG	1 cut(s)	397
Sse9I	AATT	2 cut(s)	135, 257
SseBI	AGGCCT	1 cut(s)	578
SsiI	CCGC	1 cut(s)	239
SspMI	CTAG	1 cut(s)	318
StuI	AGGCCT	1 cut(s)	578
StyD4I	CCNGG	5 cut(s)	71, 187, 435, 481, 578
TaaI	ACNGT	3 cut(s)	112, 235, 398
TaqI	TCGA	2 cut(s)	290, 564
TasI	AATT	2 cut(s)	135, 257
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	1 cut(s)	358
Tru1I	TTAA	2 cut(s)	393, 408
Tru9I	TTAA	2 cut(s)	393, 408
TscAI	CASTG	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	314
TspGWI	ACGGA	1 cut(s)	183
TspRI	CASTG	1 cut(s)	130
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.