Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010453

Physical Location & Seq

Genomic Coordinates Reverse (-)

69670315 .. 69672393

Gene Structure 2079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0512500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGTTCGGGACCACCTAATAATTTCCCTGTATCCAATTGGTGCTGATTGTTCTCTTGATATCTTGGAAGTGAAAGAATATGATATCCATGAGTCCTGGACCAAAATGATAAGACTTTGTCCACTTGCGCCACATAGAAATTTCCTCCCCAAAGCATTGTATCTTAGGAAAAGCGGTGAAGTAGTAATGGCCGAACGAGCTGATGAAGCCTCCTGTCCCAGGCATTATTCTTGTTCTCGTTGTGGGTATGAACTATTTTTCTTAGAATTTGTGAGCCAACAGTTTAAAAGTCTTGATCTGGATACAGGTATTACACTGTCAATTCTTATAAAGAGAGCATTGTCTTACTTGACAAGGAGAATGCAGTTTCTTACTGAGGGAAAGAAAAGATTTGCAGTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006605 GO:0006612 GO:0006613 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031090 GO:0031976 GO:0031984 GO:0033036 GO:0034357 GO:0034613 GO:0042175 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090150 GO:0098588 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

TRAP_alpha

Protein Analysis

134

Amino Acids

15.59

Weight (kDa)

8.62

Isoelectric Point (pI)

40.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21160 AT2G21160
fragaria_vesca	FvH4_2g01990 FvH4_2g01990
malus_domestica	MD10G1118300.v1.1 MD10G1118400.v1.1
prunus_persica	Prupe.8G160800_v2.0.a1
pyrus_communis	pycom10g10220 pycom10g10230 pycom10g10240
rosa_chinensis	RchiOBHm_Chr6g0245171
rosa_laevigata	RLG00000015319
rosa_multiflora	Rmu_sc0001288.1_g000003 Rmu_sc0015012.1_g000002
rosa_roxburghii	Rroxscaffold_7G00215390
rosa_rugosa	Rorug05G0512500
rosa_samantha	Rh6AG027600 Rh6BG023700 Rh6CG022100 Rh6DG022200
rosa_wichuraiana	Rw6G002330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	329
AciI	CCGC	1 cut(s)	174
AcoI	YGGCCR	1 cut(s)	189
AcsI	RAATTY	2 cut(s)	139, 266
AfiI	CCNNNNNNNGG	1 cut(s)	219
AjnI	CCWGG	2 cut(s)	95, 218
AluBI	AGCT	1 cut(s)	200
AluI	AGCT	1 cut(s)	200
AoxI	GGCC	1 cut(s)	189
ApoI	RAATTY	2 cut(s)	139, 266
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	2 cut(s)	10, 99
AsuHPI	GGTGA	1 cut(s)	188
AvaII	GGWCC	2 cut(s)	10, 99
BciT130I	CCWGG	2 cut(s)	97, 220
BciVI	GTATCC	2 cut(s)	42, 295
BfuI	GTATCC	2 cut(s)	42, 295
Bme1390I	CCNGG	2 cut(s)	97, 220
Bme18I	GGWCC	2 cut(s)	10, 99
BmgT120I	GGNCC	2 cut(s)	10, 99
BmiI	GGNNCC	1 cut(s)	11
BmrFI	CCNGG	2 cut(s)	97, 220
BsaJI	CCNNGG	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
BseBI	CCWGG	2 cut(s)	97, 220
BseDI	CCNNGG	1 cut(s)	218
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	366
BshFI	GGCC	1 cut(s)	191
BslFI	GGGAC	2 cut(s)	23, 201
BslI	CCNNNNNNNGG	1 cut(s)	219
BsmFI	GGGAC	2 cut(s)	23, 201
BsmI	GAATGC	1 cut(s)	366
BsnI	GGCC	1 cut(s)	191
Bsp143I	GATC	1 cut(s)	295
BspACI	CCGC	1 cut(s)	174
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	1 cut(s)	367
BspLI	GGNNCC	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	218
BssMI	GATC	1 cut(s)	295
Bst2UI	CCWGG	2 cut(s)	97, 220
Bst4CI	ACNGT	2 cut(s)	282, 318
BstDEI	CTNAG	3 cut(s)	164, 262, 375
BstENI	CCTNNNNNAGG	1 cut(s)	217
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	1 cut(s)	298
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 206
BstNI	CCWGG	2 cut(s)	97, 220
BstSCI	CCNGG	2 cut(s)	95, 218
BsuI	GTATCC	2 cut(s)	42, 295
BsuRI	GGCC	1 cut(s)	191
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	2 cut(s)	314, 402
CfoI	GCGC	1 cut(s)	130
Cfr13I	GGNCC	2 cut(s)	10, 99
CviAII	CATG	1 cut(s)	89
CviJI	RGCY	4 cut(s)	191, 200, 209, 276
CviKI_1	RGCY	4 cut(s)	191, 200, 209, 276
DdeI	CTNAG	3 cut(s)	164, 262, 375
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
DraI	TTTAAA	1 cut(s)	286
EaeI	YGGCCR	1 cut(s)	189
Eco32I	GATATC	2 cut(s)	61, 85
Eco47I	GGWCC	2 cut(s)	10, 99
EcoNI	CCTNNNNNAGG	1 cut(s)	217
EcoRII	CCWGG	2 cut(s)	95, 218
EcoRV	GATATC	2 cut(s)	61, 85
FaeI	CATG	1 cut(s)	92
FaiI	YATR	5 cut(s)	81, 90, 135, 249, 329
FaqI	GGGAC	2 cut(s)	23, 201
FatI	CATG	1 cut(s)	88
GlaI	GCGC	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	191
HhaI	GCGC	1 cut(s)	130
Hin1II	CATG	1 cut(s)	92
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HinfI	GANTC	1 cut(s)	92
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	1 cut(s)	122
Hpy188III	TCNNGA	4 cut(s)	8, 56, 293, 299
Hpy8I	GTNNAC	1 cut(s)	122
HpyCH4III	ACNGT	2 cut(s)	282, 318
HpyCH4V	TGCA	3 cut(s)	364, 395, 400
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 206
HpyF3I	CTNAG	3 cut(s)	164, 262, 375
Hsp92II	CATG	1 cut(s)	92
HspAI	GCGC	1 cut(s)	128
Kzo9I	GATC	1 cut(s)	295
LpnPI	CCDG	8 cut(s)	41, 82, 109, 205, 226, 232, 284, 291
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MfeI	CAATTG	1 cut(s)	36
MluCI	AATT	5 cut(s)	21, 36, 139, 266, 321
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	3 cut(s)	155, 220, 370
MseI	TTAA	1 cut(s)	285
MspR9I	CCNGG	2 cut(s)	97, 220
MunI	CAATTG	1 cut(s)	36
Mva1269I	GAATGC	1 cut(s)	366
MvaI	CCWGG	2 cut(s)	97, 220
MwoI	GCNNNNNNNGC	2 cut(s)	197, 206
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	1 cut(s)	92
NlaIV	GGNNCC	1 cut(s)	11
PctI	GAATGC	1 cut(s)	366
PflFI	GACNNNGTC	1 cut(s)	117
PfoI	TCCNGGA	1 cut(s)	95
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PsiI	TTATAA	1 cut(s)	329
Psp6I	CCWGG	2 cut(s)	95, 218
PspGI	CCWGG	2 cut(s)	95, 218
PspN4I	GGNNCC	1 cut(s)	11
PspPI	GGNCC	2 cut(s)	10, 99
PsyI	GACNNNGTC	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	285
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	2 cut(s)	10, 99
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	2 cut(s)	97, 220
SetI	ASST	3 cut(s)	18, 202, 310
SinI	GGWCC	2 cut(s)	10, 99
Sse9I	AATT	5 cut(s)	21, 36, 139, 266, 321
SsiI	CCGC	1 cut(s)	174
StyD4I	CCNGG	2 cut(s)	95, 218
TaaI	ACNGT	2 cut(s)	282, 318
TasI	AATT	5 cut(s)	21, 36, 139, 266, 321
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	2 cut(s)	321, 402
TspDTI	ATGAA	2 cut(s)	219, 264
TspRI	CASTG	2 cut(s)	321, 402
Tth111I	GACNNNGTC	1 cut(s)	117
VpaK11BI	GGWCC	2 cut(s)	10, 99
XagI	CCTNNNNNAGG	1 cut(s)	217
XapI	RAATTY	2 cut(s)	139, 266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.