Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010453

Physical Location & Seq

Genomic Coordinates Forward (+)

13531835 .. 13533503

Gene Structure 1669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g10220.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGATGAAAGAAAATACCGGCGGTGTGAACTCGATTTTAACACCACAAATTCTGAGAATTGTCGTCATTCTTTGTCCCGTAAACCGAAGCTATATTGGTCCCTCAGCTTTAGGCACTGTGTTGCAAAACCCACGCTCTCTTTCTCTCACTACAATTCTCACACCATCGCCACTAGCCCACCCCACCCTAAAGAGCAAGCTCCGACCACCGCCCATGGCGACCAGCACGATTAGGGTTCTTCTCCTCGCTCTCCTCCTCATCGCATCCCCTTTCCTCCAAGTCGCCAGGGGCCAGTCTGATTCGGAAGTGGATGCTTCTGACACCGTGGAAGAAAACAGTGATCGATCGGGATTGTTGGCGAGGATGTCCAAGATTTTGGAGACGGAAGTTTCAGCCCAGCTCCCGGAGTTGATACAATCTGTGTCTTCCCCAAAAACATCGCTAAAAAAGTCGGTGGCGGCAGGGGAAGAGACTGAATTACTGGTTGGCCTGAAAAATGATGGGGAGTCGAGCTTGAATGTGATTGCAATCAAAGCTACCGTTCATCTTCCTTTTGATCACAATCTGCTGGTTCAGAATCTTACTGCCCAGGTAATTGTTGGTATGATTGGTTTACACATAAATGATATCTGGATTTTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006605 GO:0006612 GO:0006613 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031090 GO:0031976 GO:0031984 GO:0033036 GO:0034357 GO:0034613 GO:0042175 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090150 GO:0098588 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

TRAP_alpha

Protein Analysis

215

Amino Acids

23.0

Weight (kDa)

6.42

Isoelectric Point (pI)

53.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21160 AT2G21160
fragaria_vesca	FvH4_2g01990 FvH4_2g01990
malus_domestica	MD10G1118300.v1.1 MD10G1118400.v1.1
prunus_persica	Prupe.8G160800_v2.0.a1
pyrus_communis	pycom10g10220 pycom10g10230 pycom10g10240
rosa_chinensis	RchiOBHm_Chr6g0245171
rosa_laevigata	RLG00000015319
rosa_multiflora	Rmu_sc0001288.1_g000003 Rmu_sc0015012.1_g000002
rosa_roxburghii	Rroxscaffold_7G00215390
rosa_rugosa	Rorug05G0512500
rosa_samantha	Rh6AG027600 Rh6BG023700 Rh6CG022100 Rh6DG022200
rosa_wichuraiana	Rw6G002330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	21, 209, 458
AcsI	RAATTY	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgsI	TTSAA	1 cut(s)	517
AjnI	CCWGG	2 cut(s)	284, 588
AjuI	GAANNNNNNNTTGG	2 cut(s)	468, 500
AluBI	AGCT	6 cut(s)	90, 107, 199, 400, 513, 536
AluI	AGCT	6 cut(s)	90, 107, 199, 400, 513, 536
Alw26I	GTCTC	2 cut(s)	374, 464
AoxI	GGCC	2 cut(s)	289, 487
ApoI	RAATTY	1 cut(s)	48
AspS9I	GGNCC	2 cut(s)	98, 289
AsuC2I	CCSGG	1 cut(s)	404
AvaII	GGWCC	1 cut(s)	98
BbsI	GAAGAC	1 cut(s)	417
BbvCI	CCTCAGC	1 cut(s)	103
BccI	CCATC	2 cut(s)	172, 494
BciT130I	CCWGG	2 cut(s)	286, 590
BclI	TGATCA	1 cut(s)	556
BcnI	CCSGG	1 cut(s)	404
BcoDI	GTCTC	2 cut(s)	374, 464
BfaI	CTAG	1 cut(s)	173
BisI	GCNGC	1 cut(s)	459
BlsI	GCNGC	1 cut(s)	460
Bme1390I	CCNGG	3 cut(s)	286, 404, 590
Bme18I	GGWCC	1 cut(s)	98
BmgT120I	GGNCC	2 cut(s)	98, 289
BmiI	GGNNCC	2 cut(s)	100, 290
BmrFI	CCNGG	3 cut(s)	286, 404, 590
BmsI	GCATC	2 cut(s)	272, 301
BpiI	GAAGAC	1 cut(s)	417
Bpu10I	CCTNAGC	1 cut(s)	103
BpuMI	CCSGG	1 cut(s)	404
Bsa29I	ATCGAT	1 cut(s)	343
BsaBI	GATNNNNATC	2 cut(s)	527, 561
BsaJI	CCNNGG	4 cut(s)	213, 285, 324, 588
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse118I	RCCGGY	1 cut(s)	17
Bse1I	ACTGG	2 cut(s)	292, 486
Bse8I	GATNNNNATC	2 cut(s)	527, 561
BseBI	CCWGG	2 cut(s)	286, 590
BseCI	ATCGAT	1 cut(s)	343
BseDI	CCNNGG	4 cut(s)	213, 285, 324, 588
BseGI	GGATG	3 cut(s)	263, 316, 369
BseJI	GATNNNNATC	2 cut(s)	527, 561
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMII	CTCAG	2 cut(s)	44, 117
BseNI	ACTGG	2 cut(s)	292, 486
BseRI	GAGGAG	3 cut(s)	233, 242, 245
BseYI	CCCAGC	1 cut(s)	396
Bsh1285I	CGRYCG	1 cut(s)	347
BshFI	GGCC	2 cut(s)	291, 489
BshVI	ATCGAT	1 cut(s)	343
BsiEI	CGRYCG	1 cut(s)	347
BsiSI	CCGG	2 cut(s)	18, 404
BslFI	GGGAC	2 cut(s)	60, 84
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmAI	GTCTC	2 cut(s)	374, 464
BsmBI	CGTCTC	1 cut(s)	374
BsmFI	GGGAC	2 cut(s)	60, 84
BsnI	GGCC	2 cut(s)	291, 489
Bsp143I	GATC	3 cut(s)	340, 344, 556
Bsp19I	CCATGG	1 cut(s)	213
BspACI	CCGC	3 cut(s)	21, 209, 458
BspANI	GGCC	2 cut(s)	291, 489
BspCNI	CTCAG	2 cut(s)	45, 116
BspDI	ATCGAT	1 cut(s)	343
BspLI	GGNNCC	2 cut(s)	100, 290
BsrFI	RCCGGY	1 cut(s)	17
BsrI	ACTGG	2 cut(s)	292, 486
BssAI	RCCGGY	1 cut(s)	17
BssECI	CCNNGG	4 cut(s)	213, 285, 324, 588
BssMI	GATC	3 cut(s)	340, 344, 556
BssT1I	CCWWGG	1 cut(s)	213
Bst2UI	CCWGG	2 cut(s)	286, 590
Bst4CI	ACNGT	4 cut(s)	118, 325, 338, 541
Bst6I	CTCTTC	1 cut(s)	462
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	2 cut(s)	53, 103
BstDSI	CCRYGG	2 cut(s)	213, 324
BstF5I	GGATG	3 cut(s)	263, 316, 369
BstKTI	GATC	3 cut(s)	343, 347, 559
BstMAI	GTCTC	2 cut(s)	374, 464
BstMBI	GATC	3 cut(s)	340, 344, 556
BstMCI	CGRYCG	1 cut(s)	347
BstMWI	GCNNNNNNNGC	1 cut(s)	533
BstNI	CCWGG	2 cut(s)	286, 590
BstSCI	CCNGG	3 cut(s)	284, 402, 588
BstV2I	GAAGAC	1 cut(s)	417
BstXI	CCANNNNNNTGG	1 cut(s)	376
Bsu15I	ATCGAT	1 cut(s)	343
BsuRI	GGCC	2 cut(s)	291, 489
BsuTUI	ATCGAT	1 cut(s)	343
BtgI	CCRYGG	2 cut(s)	213, 324
BtgZI	GCGATG	3 cut(s)	150, 244, 423
BtsCI	GGATG	3 cut(s)	263, 316, 369
BtsIMutI	CAGTG	2 cut(s)	114, 343
Cac8I	GCNNGC	1 cut(s)	197
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	2 cut(s)	98, 289
ClaI	ATCGAT	1 cut(s)	343
CviAII	CATG	1 cut(s)	214
DdeI	CTNAG	2 cut(s)	53, 103
DpnI	GATC	3 cut(s)	342, 346, 558
DpnII	GATC	3 cut(s)	340, 344, 556
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Eco130I	CCWWGG	1 cut(s)	213
Eco32I	GATATC	1 cut(s)	628
Eco47I	GGWCC	1 cut(s)	98
EcoRII	CCWGG	2 cut(s)	284, 588
EcoRV	GATATC	1 cut(s)	628
EcoT14I	CCWWGG	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	213
Esp3I	CGTCTC	1 cut(s)	374
FaeI	CATG	1 cut(s)	217
FaiI	YATR	4 cut(s)	93, 215, 605, 620
FaqI	GGGAC	2 cut(s)	60, 84
FatI	CATG	1 cut(s)	213
FbaI	TGATCA	1 cut(s)	556
Fnu4HI	GCNGC	1 cut(s)	459
FokI	GGATG	3 cut(s)	250, 323, 376
Fsp4HI	GCNGC	1 cut(s)	459
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	1 cut(s)	459
GsaI	CCCAGC	1 cut(s)	400
HaeIII	GGCC	2 cut(s)	291, 489
HapII	CCGG	2 cut(s)	18, 404
Hin1II	CATG	1 cut(s)	217
HinfI	GANTC	3 cut(s)	299, 506, 577
HpaII	CCGG	2 cut(s)	18, 404
Hpy166II	GTNNAC	3 cut(s)	28, 82, 614
Hpy188I	TCNGA	6 cut(s)	54, 203, 298, 304, 319, 576
Hpy188III	TCNNGA	2 cut(s)	348, 631
Hpy8I	GTNNAC	3 cut(s)	28, 82, 614
HpyCH4III	ACNGT	4 cut(s)	118, 325, 338, 541
HpyCH4V	TGCA	2 cut(s)	124, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	533
HpyF3I	CTNAG	2 cut(s)	53, 103
Hsp92II	CATG	1 cut(s)	217
Ksp22I	TGATCA	1 cut(s)	556
Kzo9I	GATC	3 cut(s)	340, 344, 556
LmnI	GCTCC	2 cut(s)	204, 405
LweI	GCATC	2 cut(s)	272, 301
MaeI	CTAG	1 cut(s)	173
MalI	GATC	3 cut(s)	342, 346, 558
MboI	GATC	3 cut(s)	340, 344, 556
MboII	GAAGA	5 cut(s)	230, 341, 417, 479, 539
MluCI	AATT	5 cut(s)	48, 57, 153, 476, 594
MlyI	GAGTC	1 cut(s)	515
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	6 cut(s)	112, 254, 263, 266, 284, 354
MseI	TTAA	2 cut(s)	38, 643
MslI	CAYNNNNRTG	1 cut(s)	621
MspI	CCGG	2 cut(s)	18, 404
MspR9I	CCNGG	3 cut(s)	286, 404, 590
MvaI	CCWGG	2 cut(s)	286, 590
MwoI	GCNNNNNNNGC	1 cut(s)	533
NciI	CCSGG	1 cut(s)	404
NcoI	CCATGG	1 cut(s)	213
NdeII	GATC	3 cut(s)	340, 344, 556
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	2 cut(s)	100, 290
PfeI	GAWTC	2 cut(s)	299, 577
PfoI	TCCNGGA	1 cut(s)	402
PkrI	GCNGC	1 cut(s)	460
Ple19I	CGATCG	1 cut(s)	347
PleI	GAGTC	1 cut(s)	514
PpsI	GAGTC	1 cut(s)	514
Psp6I	CCWGG	2 cut(s)	284, 588
PspFI	CCCAGC	1 cut(s)	396
PspGI	CCWGG	2 cut(s)	284, 588
PspN4I	GGNNCC	2 cut(s)	100, 290
PspPI	GGNCC	2 cut(s)	98, 289
PvuI	CGATCG	1 cut(s)	347
RseI	CAYNNNNRTG	1 cut(s)	621
SaqAI	TTAA	2 cut(s)	38, 643
SatI	GCNGC	1 cut(s)	459
Sau3AI	GATC	3 cut(s)	340, 344, 556
Sau96I	GGNCC	2 cut(s)	98, 289
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	3 cut(s)	286, 404, 590
SetI	ASST	7 cut(s)	92, 109, 201, 402, 515, 538, 594
SfaNI	GCATC	2 cut(s)	272, 301
SinI	GGWCC	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	621
Sse9I	AATT	5 cut(s)	48, 57, 153, 476, 594
SsiI	CCGC	3 cut(s)	21, 209, 458
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	3 cut(s)	284, 402, 588
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	4 cut(s)	118, 325, 338, 541
TaqI	TCGA	3 cut(s)	32, 343, 509
TasI	AATT	5 cut(s)	48, 57, 153, 476, 594
TauI	GCSGC	1 cut(s)	461
TfiI	GAWTC	2 cut(s)	299, 577
Tru1I	TTAA	2 cut(s)	38, 643
Tru9I	TTAA	2 cut(s)	38, 643
TscAI	CASTG	2 cut(s)	121, 343
TspDTI	ATGAA	2 cut(s)	20, 533
TspGWI	ACGGA	1 cut(s)	398
TspRI	CASTG	2 cut(s)	121, 343
VpaK11BI	GGWCC	1 cut(s)	98
XapI	RAATTY	1 cut(s)	48
XcmI	CCANNNNNNNNNTGG	1 cut(s)	596
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.