Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0010453

Physical Location & Seq

Genomic Coordinates Reverse (-)

1944861 .. 1949101

Gene Structure 4241 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG022200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGCGGTTGTTGATTGGTGAAGTGCATGATTTATGTGTTTGCCGGTTTGATGTGAATTTGAATTGGCTAATAGTGAATATATGGTTGTTCGTTTTTGTAGTCGCCAGGGGCGAGTCTGACTCTGACTCAGAATCAGATTCCGTATCTGAGGTTGTGGAAGAAAACAGTGATCTTGGGATTGTAGGCGATGATGTCCAGGATTTTGCGGATGCAAGTTTTAGTCCAGCACCAGGAATTGAGACAATCTGTGTTTTCCCCAAAAATAAAGCAAAAACGGTGGCGGCAGGGGAGCAGACTGAACTACTCGTTGGATTGAGAAATGATGGGGAGTCGAGCCTGAATGTGATTGCAGTCAAAGCCAGTGTTCATCTTCCATTTGATCACAACCTGCTGGTTCAGAATCTTACTGCAGTGGCTTTTAACAATGCATCAGTTCCAGCTTCAGCTCAGGCTACCTTTCCATACCTATTTGCTGTCAGCAAGTTCTTGCAGCCTGGAACCTTTGACCTAGTGGGTACCATTATTTATGAGATAGACCAGCAGCCATACCAAAGCACATACTACAATGGTACCATTGAGGTTGTTGAGGCTGGTAGTCTTCTCAGCATCGAGTCTGTTTTCCTTATAACCCTTGGATTTGCTCTTCTCGTCCTCTTGGGGTTATGGATTCACGGTCAAATACAGCACCTTTCTAAGGTAATGAAAATTCACTATGGGATAGTTATATTGCTAAACTCTTTTCAGATATTTTATAAGAGTGCACGCCCCAATCCATCAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006605 GO:0006612 GO:0006613 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031090 GO:0031976 GO:0031984 GO:0033036 GO:0034357 GO:0034613 GO:0042175 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090150 GO:0098588 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

TRAP_alpha

Protein Analysis

260

Amino Acids

28.47

Weight (kDa)

4.58

Isoelectric Point (pI)

45.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAP_alpha	PF03896	88 - 224	2.6e-10	Translocon-associated protein (TRAP), alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21160 AT2G21160
fragaria_vesca	FvH4_2g01990 FvH4_2g01990
malus_domestica	MD10G1118300.v1.1 MD10G1118400.v1.1
prunus_persica	Prupe.8G160800_v2.0.a1
pyrus_communis	pycom10g10220 pycom10g10230 pycom10g10240
rosa_chinensis	RchiOBHm_Chr6g0245171
rosa_laevigata	RLG00000015319
rosa_multiflora	Rmu_sc0001288.1_g000003 Rmu_sc0015012.1_g000002
rosa_roxburghii	Rroxscaffold_7G00215390
rosa_rugosa	Rorug05G0512500
rosa_samantha	Rh6AG027600 Rh6BG023700 Rh6CG022100 Rh6DG022200
rosa_wichuraiana	Rw6G002330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	626, 753
Acc36I	ACCTGC	1 cut(s)	396
Acc65I	GGTACC	2 cut(s)	515, 569
AccB1I	GGYRCC	2 cut(s)	515, 569
AciI	CCGC	3 cut(s)	4, 206, 281
AcsI	RAATTY	2 cut(s)	55, 705
AcuI	CTGAAG	1 cut(s)	426
AfaI	GTAC	2 cut(s)	517, 571
AfiI	CCNNNNNNNGG	2 cut(s)	230, 694
AgsI	TTSAA	1 cut(s)	61
AjnI	CCWGG	4 cut(s)	104, 195, 229, 493
AjuI	GAANNNNNNNTTGG	2 cut(s)	291, 323
AluBI	AGCT	2 cut(s)	440, 446
AluI	AGCT	2 cut(s)	440, 446
Alw21I	GWGCWC	1 cut(s)	763
Alw26I	GTCTC	1 cut(s)	233
Alw44I	GTGCAC	1 cut(s)	759
ApaLI	GTGCAC	1 cut(s)	759
ApeKI	GCWGC	2 cut(s)	490, 541
ApoI	RAATTY	2 cut(s)	55, 705
Asp718I	GGTACC	2 cut(s)	515, 569
AsuHPI	GGTGA	1 cut(s)	29
BaeGI	GKGCMC	1 cut(s)	763
BaeI	ACNNNNGTAYC	2 cut(s)	553, 586
BanI	GGYRCC	2 cut(s)	515, 569
BbsI	GAAGAC	1 cut(s)	590
Bbv12I	GWGCWC	1 cut(s)	763
BbvI	GCAGC	2 cut(s)	502, 553
BccI	CCATC	2 cut(s)	317, 781
BciT130I	CCWGG	4 cut(s)	106, 197, 231, 495
BclI	TGATCA	1 cut(s)	379
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	2 cut(s)	509, 781
BfmI	CTRYAG	1 cut(s)	408
BfuAI	ACCTGC	1 cut(s)	396
BisI	GCNGC	3 cut(s)	282, 491, 542
BlsI	GCNGC	3 cut(s)	283, 492, 543
Bme1390I	CCNGG	4 cut(s)	106, 197, 231, 495
BmiI	GGNNCC	3 cut(s)	499, 517, 571
BmrFI	CCNGG	4 cut(s)	106, 197, 231, 495
BmsI	GCATC	3 cut(s)	199, 437, 615
BpiI	GAAGAC	1 cut(s)	590
BplI	GAGNNNNNCTC	2 cut(s)	104, 136
Bpu10I	CCTNAGC	1 cut(s)	447
BsaJI	CCNNGG	2 cut(s)	105, 631
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 694
Bse118I	RCCGGY	1 cut(s)	42
Bse1I	ACTGG	1 cut(s)	360
BseBI	CCWGG	4 cut(s)	106, 197, 231, 495
BseDI	CCNNGG	2 cut(s)	105, 631
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	2 cut(s)	230, 694
BseMII	CTCAG	4 cut(s)	138, 141, 461, 616
BseNI	ACTGG	1 cut(s)	360
BseSI	GKGCMC	1 cut(s)	763
BseXI	GCAGC	2 cut(s)	502, 553
BshNI	GGYRCC	2 cut(s)	515, 569
BsiHKAI	GWGCWC	1 cut(s)	763
BsiSI	CCGG	1 cut(s)	43
BslI	CCNNNNNNNGG	2 cut(s)	230, 694
BsmAI	GTCTC	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	763
Bsp143I	GATC	2 cut(s)	169, 379
BspACI	CCGC	3 cut(s)	4, 206, 281
BspCNI	CTCAG	4 cut(s)	139, 140, 460, 615
BspLI	GGNNCC	3 cut(s)	499, 517, 571
BspMAI	CTGCAG	1 cut(s)	412
BspMI	ACCTGC	1 cut(s)	396
BspQI	GCTCTTC	1 cut(s)	648
BspT107I	GGYRCC	2 cut(s)	515, 569
BsrFI	RCCGGY	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	360
BssAI	RCCGGY	1 cut(s)	42
BssECI	CCNNGG	2 cut(s)	105, 631
BssMI	GATC	2 cut(s)	169, 379
BssT1I	CCWWGG	1 cut(s)	631
Bst2UI	CCWGG	4 cut(s)	106, 197, 231, 495
Bst4CI	ACNGT	3 cut(s)	167, 277, 674
Bst6I	CTCTTC	1 cut(s)	648
BstC8I	GCNNGC	1 cut(s)	763
BstDEI	CTNAG	5 cut(s)	127, 147, 447, 602, 693
BstENI	CCTNNNNNAGG	1 cut(s)	692
BstF5I	GGATG	1 cut(s)	214
BstKTI	GATC	2 cut(s)	172, 382
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	2 cut(s)	169, 379
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstNI	CCWGG	4 cut(s)	106, 197, 231, 495
BstSCI	CCNGG	4 cut(s)	104, 195, 229, 493
BstSFI	CTRYAG	1 cut(s)	408
BstSLI	GKGCMC	1 cut(s)	763
BstV1I	GCAGC	2 cut(s)	502, 553
BstV2I	GAAGAC	1 cut(s)	590
BtgZI	GCGATG	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	214
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	3 cut(s)	172, 367, 417
BveI	ACCTGC	1 cut(s)	396
Cac8I	GCNNGC	1 cut(s)	763
Cfr10I	RCCGGY	1 cut(s)	42
Csp6I	GTAC	2 cut(s)	516, 570
CspCI	CAANNNNNGTGG	2 cut(s)	258, 293
CviAII	CATG	1 cut(s)	26
CviQI	GTAC	2 cut(s)	516, 570
DdeI	CTNAG	5 cut(s)	127, 147, 447, 602, 693
DpnI	GATC	2 cut(s)	171, 381
DpnII	GATC	2 cut(s)	169, 379
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
Eco130I	CCWWGG	1 cut(s)	631
Eco57I	CTGAAG	1 cut(s)	426
EcoNI	CCTNNNNNAGG	1 cut(s)	692
EcoRII	CCWGG	4 cut(s)	104, 195, 229, 493
EcoT14I	CCWWGG	1 cut(s)	631
EcoT22I	ATGCAT	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	631
FaeI	CATG	1 cut(s)	29
FatI	CATG	1 cut(s)	25
FbaI	TGATCA	1 cut(s)	379
Fnu4HI	GCNGC	3 cut(s)	282, 491, 542
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	3 cut(s)	282, 491, 542
FspBI	CTAG	2 cut(s)	509, 781
GluI	GCNGC	3 cut(s)	282, 491, 542
HapII	CCGG	1 cut(s)	43
Hin1II	CATG	1 cut(s)	29
HinfI	GANTC	9 cut(s)	113, 119, 125, 131, 137, 329, 400, 611, 667
HpaII	CCGG	1 cut(s)	43
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	1 cut(s)	761
Hpy188I	TCNGA	7 cut(s)	118, 124, 130, 136, 148, 399, 744
Hpy8I	GTNNAC	1 cut(s)	761
HpyCH4III	ACNGT	3 cut(s)	167, 277, 674
HpyCH4V	TGCA	7 cut(s)	25, 212, 350, 410, 428, 490, 761
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	5 cut(s)	127, 147, 447, 602, 693
Hsp92II	CATG	1 cut(s)	29
KpnI	GGTACC	2 cut(s)	519, 573
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	2 cut(s)	169, 379
LguI	GCTCTTC	1 cut(s)	648
LmnI	GCTCC	1 cut(s)	289
Lsp1109I	GCAGC	2 cut(s)	502, 553
LweI	GCATC	3 cut(s)	199, 437, 615
MaeI	CTAG	2 cut(s)	509, 781
MalI	GATC	2 cut(s)	171, 381
MboI	GATC	2 cut(s)	169, 379
MboII	GAAGA	4 cut(s)	170, 362, 590, 635
MhlI	GDGCHC	1 cut(s)	763
MluCI	AATT	4 cut(s)	55, 61, 234, 705
MlyI	GAGTC	5 cut(s)	113, 119, 122, 338, 620
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	4 cut(s)	142, 571, 580, 662
Mph1103I	ATGCAT	1 cut(s)	430
MseI	TTAA	1 cut(s)	420
MspI	CCGG	1 cut(s)	43
MspR9I	CCNGG	4 cut(s)	106, 197, 231, 495
MvaI	CCWGG	4 cut(s)	106, 197, 231, 495
MwoI	GCNNNNNNNGC	1 cut(s)	356
NdeII	GATC	2 cut(s)	169, 379
NlaIII	CATG	1 cut(s)	29
NlaIV	GGNNCC	3 cut(s)	499, 517, 571
NsiI	ATGCAT	1 cut(s)	430
PciSI	GCTCTTC	1 cut(s)	648
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PfeI	GAWTC	4 cut(s)	131, 137, 400, 667
PfoI	TCCNGGA	1 cut(s)	195
PkrI	GCNGC	3 cut(s)	283, 492, 543
PleI	GAGTC	5 cut(s)	113, 119, 121, 337, 619
PpsI	GAGTC	5 cut(s)	113, 119, 121, 337, 619
PsiI	TTATAA	2 cut(s)	626, 753
Psp6I	CCWGG	4 cut(s)	104, 195, 229, 493
PspGI	CCWGG	4 cut(s)	104, 195, 229, 493
PspN4I	GGNNCC	3 cut(s)	499, 517, 571
PstI	CTGCAG	1 cut(s)	412
RsaI	GTAC	2 cut(s)	517, 571
RsaNI	GTAC	2 cut(s)	516, 570
SapI	GCTCTTC	1 cut(s)	648
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	3 cut(s)	282, 491, 542
Sau3AI	GATC	2 cut(s)	169, 379
SchI	GAGTC	5 cut(s)	113, 119, 122, 338, 620
ScrFI	CCNGG	4 cut(s)	106, 197, 231, 495
SduI	GDGCHC	1 cut(s)	763
SfaNI	GCATC	3 cut(s)	199, 437, 615
SfcI	CTRYAG	1 cut(s)	408
Sse9I	AATT	4 cut(s)	55, 61, 234, 705
SsiI	CCGC	3 cut(s)	4, 206, 281
SspMI	CTAG	2 cut(s)	509, 781
StyD4I	CCNGG	4 cut(s)	104, 195, 229, 493
StyI	CCWWGG	1 cut(s)	631
TaaI	ACNGT	3 cut(s)	167, 277, 674
TaqI	TCGA	2 cut(s)	332, 609
TasI	AATT	4 cut(s)	55, 61, 234, 705
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	4 cut(s)	131, 137, 400, 667
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	3 cut(s)	172, 367, 417
TseI	GCWGC	2 cut(s)	490, 541
TspDTI	ATGAA	2 cut(s)	356, 716
TspGWI	ACGGA	1 cut(s)	130
TspRI	CASTG	3 cut(s)	172, 367, 417
VneI	GTGCAC	1 cut(s)	759
XagI	CCTNNNNNAGG	1 cut(s)	692
XapI	RAATTY	2 cut(s)	55, 705
XspI	CTAG	2 cut(s)	509, 781
Zsp2I	ATGCAT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.