Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009847

Physical Location & Seq

Genomic Coordinates Forward (+)

9080760 .. 9083009

Gene Structure 2250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G21190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAAGACTCCGATCCACGCGGTTTCGACATGGGTGAGGAGGCAGCCTCCAAAGGTGAAAGCTTTCCTTGCCGTCGTATCTGGCATGGCGGCTCTTGTTCTCCTCAAACTCATCGTTCACGATCACGACAATCTCTTCGTTGCCGCCGAAGCTGTTCATTCTATTGGAATCTCTGTTCTTATCTATAAACTCATGAAGGAGAAGACTTGTGCTGGATTGTCATTGAAATCTCAGGAGCTTACGGCGATATTTCTAGCTGTGAGGCTTTATTGCAGTTTTGTAATGGAATATGATATACATACCATTCTGGACTTGGCTACTTTGGGAACAACTCTCTGGGTTATATATATGATCCGTTTTAACCTCAAAACTACTTACATGGAGGAAAAAGACAACTTCGCTCTCTATTATGTGCTGGCGCCCTGTGTTGTGCTAGCTGTATGGATTCATCCATCAACGTCACACAATATATTGAATAGAATATCCTGGGGATTCTGTGTTTACCTCGAAGCTGTTTCAGTACTGCCACAGTTGAGAGTGATGCAGAACACAAAGATTGTCGAACCCTTCACGGCTCATTATGTTTTTGCACTTGGAGTAGCAAGATTTTTTAGCTGTGCACACTGGGTTTTACAGATGATGGACACGCACGGACGACTGCTTGTAGTGCTGGGTTATGGACTATGGCCATCGATGGTTATAATCTCAGAAATAGTCCAAACATTCATATTGGCAGATTTCTGTTACTACTACGTTAAAAGTGTTTTCGGTGGCCAGCTTGTTCTAAGGCTTCCATCTGGGGTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05110 map05110

Pfam Domains

Protein Families

ER_lumen_recept

Protein Analysis

269

Amino Acids

30.44

Weight (kDa)

8.83

Isoelectric Point (pI)

33.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ER_lumen_recept	PF00810	69 - 211	1.6e-43	ER lumen protein retaining receptor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21190 AT4G38790
fragaria_vesca	FvH4_2g02100
malus_domestica	MD05G1115100.v1.1 MD10G1116900.v1.1
prunus_persica	Prupe.8G159700_v2.0.a1 Prupe.8G159700_v2.0.a1 Prupe.8G159700_v2.0.a1
pyrus_communis	pycom05g10960 pycom10g10150
rosa_chinensis	RchiOBHm_Chr6g0245611
rosa_laevigata	RLG00000015300
rosa_multiflora	Rmu_co7981042.1_g000001 Rmu_sc0001341.1_g000004
rosa_roxburghii	Rroxscaffold_7G00215230
rosa_rugosa	Rorug05G0515000.1
rosa_samantha	Rh6AG029800 Rh6BG027000 Rh6CG026400 Rh6DG025900
rosa_wichuraiana	Rw6G002540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	701
AccB1I	GGYRCC	1 cut(s)	418
AccII	CGCG	1 cut(s)	20
AciI	CCGC	3 cut(s)	20, 89, 144
AclWI	GGATC	2 cut(s)	7, 346
AcoI	YGGCCR	2 cut(s)	686, 772
AcyI	GRCGYC	1 cut(s)	419
AfaI	GTAC	1 cut(s)	522
AgsI	TTSAA	2 cut(s)	226, 475
AjnI	CCWGG	1 cut(s)	485
AloI	GAACNNNNNNTCC	2 cut(s)	159, 191
AluBI	AGCT	8 cut(s)	62, 152, 238, 257, 437, 512, 615, 778
AluI	AGCT	8 cut(s)	62, 152, 238, 257, 437, 512, 615, 778
Alw21I	GWGCWC	1 cut(s)	622
Alw44I	GTGCAC	1 cut(s)	618
AlwI	GGATC	2 cut(s)	7, 346
AoxI	GGCC	2 cut(s)	686, 772
ApaLI	GTGCAC	1 cut(s)	618
ApeKI	GCWGC	1 cut(s)	43
ArsI	GACNNNNNNTTYG	2 cut(s)	119, 151
Asp700I	GAANNNNTTC	2 cut(s)	62, 153
AspLEI	GCGC	1 cut(s)	421
AsuHPI	GGTGA	2 cut(s)	46, 67
AsuNHI	GCTAGC	1 cut(s)	433
BaeGI	GKGCMC	1 cut(s)	622
BalI	TGGCCA	2 cut(s)	688, 774
BanI	GGYRCC	1 cut(s)	418
BbsI	GAAGAC	2 cut(s)	11, 209
Bbv12I	GWGCWC	1 cut(s)	622
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	5 cut(s)	460, 634, 688, 697, 802
BceAI	ACGGC	3 cut(s)	56, 258, 588
BciT130I	CCWGG	1 cut(s)	487
BfaI	CTAG	2 cut(s)	254, 434
BfoI	RGCGCY	1 cut(s)	422
BisI	GCNGC	3 cut(s)	44, 90, 144
BlsI	GCNGC	3 cut(s)	45, 91, 145
BmcAI	AGTACT	1 cut(s)	522
Bme1390I	CCNGG	1 cut(s)	487
BmiI	GGNNCC	1 cut(s)	420
BmrFI	CCNGG	1 cut(s)	487
BmrI	ACTGGG	1 cut(s)	634
BmsI	GCATC	1 cut(s)	531
BmtI	GCTAGC	1 cut(s)	437
BmuI	ACTGGG	1 cut(s)	634
BpiI	GAAGAC	2 cut(s)	11, 209
BplI	GAGNNNNNCTC	2 cut(s)	31, 63
Bsa29I	ATCGAT	1 cut(s)	692
BsaHI	GRCGYC	1 cut(s)	419
BsaJI	CCNNGG	1 cut(s)	486
Bse1I	ACTGG	1 cut(s)	629
BseBI	CCWGG	1 cut(s)	487
BseCI	ATCGAT	1 cut(s)	692
BseDI	CCNNGG	1 cut(s)	486
BseGI	GGATG	1 cut(s)	448
BseMII	CTCAG	2 cut(s)	245, 720
BseNI	ACTGG	1 cut(s)	629
BseRI	GAGGAG	2 cut(s)	52, 92
BseSI	GKGCMC	1 cut(s)	622
BseXI	GCAGC	1 cut(s)	55
BseYI	CCCAGC	1 cut(s)	670
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	2 cut(s)	688, 774
BshNI	GGYRCC	1 cut(s)	418
BshVI	ATCGAT	1 cut(s)	692
BsiHKAI	GWGCWC	1 cut(s)	622
BsnI	GGCC	2 cut(s)	688, 774
Bsp1286I	GDGCHC	1 cut(s)	622
Bsp143I	GATC	3 cut(s)	12, 121, 351
BspACI	CCGC	3 cut(s)	20, 89, 144
BspANI	GGCC	2 cut(s)	688, 774
BspCNI	CTCAG	2 cut(s)	244, 719
BspDI	ATCGAT	1 cut(s)	692
BspFNI	CGCG	1 cut(s)	20
BspHI	TCATGA	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	420
BspOI	GCTAGC	1 cut(s)	437
BspPI	GGATC	2 cut(s)	7, 346
BspT107I	GGYRCC	1 cut(s)	418
BsrI	ACTGG	1 cut(s)	629
BssECI	CCNNGG	1 cut(s)	486
BssMI	GATC	3 cut(s)	12, 121, 351
BssNI	GRCGYC	1 cut(s)	419
Bst2UI	CCWGG	1 cut(s)	487
Bst4CI	ACNGT	1 cut(s)	531
Bst6I	CTCTTC	1 cut(s)	140
BstACI	GRCGYC	1 cut(s)	419
BstC8I	GCNNGC	3 cut(s)	417, 435, 776
BstDEI	CTNAG	3 cut(s)	231, 706, 785
BstF5I	GGATG	1 cut(s)	448
BstFNI	CGCG	1 cut(s)	20
BstH2I	RGCGCY	1 cut(s)	422
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	3 cut(s)	15, 124, 354
BstMBI	GATC	3 cut(s)	12, 121, 351
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 149, 667
BstNI	CCWGG	1 cut(s)	487
BstSCI	CCNGG	1 cut(s)	485
BstSLI	GKGCMC	1 cut(s)	622
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	55
BstV2I	GAAGAC	2 cut(s)	11, 209
Bsu15I	ATCGAT	1 cut(s)	692
BsuRI	GGCC	2 cut(s)	688, 774
BsuTUI	ATCGAT	1 cut(s)	692
BtsCI	GGATG	1 cut(s)	448
BtsIMutI	CAGTG	1 cut(s)	622
Cac8I	GCNNGC	3 cut(s)	417, 435, 776
CciI	TCATGA	1 cut(s)	192
CfoI	GCGC	1 cut(s)	421
ClaI	ATCGAT	1 cut(s)	692
Csp6I	GTAC	1 cut(s)	521
CviAII	CATG	4 cut(s)	30, 85, 193, 379
CviQI	GTAC	1 cut(s)	521
DdeI	CTNAG	3 cut(s)	231, 706, 785
DinI	GGCGCC	1 cut(s)	420
DpnI	GATC	3 cut(s)	14, 123, 353
DpnII	GATC	3 cut(s)	12, 121, 351
EaeI	YGGCCR	2 cut(s)	686, 772
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	485
EgeI	GGCGCC	1 cut(s)	420
EheI	GGCGCC	1 cut(s)	420
FaeI	CATG	4 cut(s)	33, 88, 196, 382
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FatI	CATG	4 cut(s)	29, 84, 192, 378
Fnu4HI	GCNGC	3 cut(s)	44, 90, 144
FokI	GGATG	1 cut(s)	435
Fsp4HI	GCNGC	3 cut(s)	44, 90, 144
FspBI	CTAG	2 cut(s)	254, 434
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	3 cut(s)	44, 90, 144
GsaI	CCCAGC	1 cut(s)	674
HaeII	RGCGCY	1 cut(s)	422
HaeIII	GGCC	2 cut(s)	688, 774
HhaI	GCGC	1 cut(s)	421
Hin1I	GRCGYC	1 cut(s)	419
Hin1II	CATG	4 cut(s)	33, 88, 196, 382
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HindIII	AAGCTT	1 cut(s)	60
HinfI	GANTC	4 cut(s)	7, 168, 445, 492
HphI	GGTGA	2 cut(s)	46, 67
Hpy166II	GTNNAC	3 cut(s)	118, 502, 620
Hpy188I	TCNGA	2 cut(s)	12, 709
Hpy188III	TCNNGA	5 cut(s)	119, 125, 193, 233, 308
Hpy8I	GTNNAC	3 cut(s)	118, 502, 620
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	2 cut(s)	190, 577
HpyCH4III	ACNGT	1 cut(s)	531
HpyCH4IV	ACGT	2 cut(s)	458, 753
HpyCH4V	TGCA	4 cut(s)	273, 544, 590, 620
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 149, 667
HpyF3I	CTNAG	3 cut(s)	231, 706, 785
HpySE526I	ACGT	2 cut(s)	458, 753
Hsp92I	GRCGYC	1 cut(s)	419
Hsp92II	CATG	4 cut(s)	33, 88, 196, 382
HspAI	GCGC	1 cut(s)	419
KasI	GGCGCC	1 cut(s)	418
Kzo9I	GATC	3 cut(s)	12, 121, 351
LmnI	GCTCC	1 cut(s)	235
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	1 cut(s)	531
MaeI	CTAG	2 cut(s)	254, 434
MaeII	ACGT	2 cut(s)	458, 753
MaeIII	GTNAC	2 cut(s)	459, 743
MalI	GATC	3 cut(s)	14, 123, 353
MboI	GATC	3 cut(s)	12, 121, 351
MboII	GAAGA	3 cut(s)	16, 127, 214
MhlI	GDGCHC	1 cut(s)	622
MlsI	TGGCCA	2 cut(s)	688, 774
MluNI	TGGCCA	2 cut(s)	688, 774
Mly113I	GGCGCC	1 cut(s)	419
MnlI	CCTC	8 cut(s)	30, 33, 57, 113, 255, 374, 376, 515
Mox20I	TGGCCA	2 cut(s)	688, 774
MroXI	GAANNNNTTC	2 cut(s)	62, 153
MscI	TGGCCA	2 cut(s)	688, 774
MseI	TTAA	2 cut(s)	360, 756
Msp20I	TGGCCA	2 cut(s)	688, 774
MspR9I	CCNGG	1 cut(s)	487
MvaI	CCWGG	1 cut(s)	487
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	3 cut(s)	68, 149, 667
NarI	GGCGCC	1 cut(s)	419
NdeII	GATC	3 cut(s)	12, 121, 351
NheI	GCTAGC	1 cut(s)	433
NlaIII	CATG	4 cut(s)	33, 88, 196, 382
NlaIV	GGNNCC	1 cut(s)	420
NmuCI	GTSAC	1 cut(s)	459
PagI	TCATGA	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PdmI	GAANNNNTTC	2 cut(s)	62, 153
PfeI	GAWTC	3 cut(s)	168, 445, 492
PkrI	GCNGC	3 cut(s)	45, 91, 145
PluTI	GGCGCC	1 cut(s)	422
PsiI	TTATAA	1 cut(s)	701
Psp6I	CCWGG	1 cut(s)	485
PspFI	CCCAGC	1 cut(s)	670
PspGI	CCWGG	1 cut(s)	485
PspN4I	GGNNCC	1 cut(s)	420
RsaI	GTAC	1 cut(s)	522
RsaNI	GTAC	1 cut(s)	521
SaqAI	TTAA	2 cut(s)	360, 756
SatI	GCNGC	3 cut(s)	44, 90, 144
Sau3AI	GATC	3 cut(s)	12, 121, 351
ScaI	AGTACT	1 cut(s)	522
ScrFI	CCNGG	1 cut(s)	487
SduI	GDGCHC	1 cut(s)	622
SfaNI	GCATC	1 cut(s)	531
SfoI	GGCGCC	1 cut(s)	420
SsiI	CCGC	3 cut(s)	20, 89, 144
SspDI	GGCGCC	1 cut(s)	418
SspMI	CTAG	2 cut(s)	254, 434
StyD4I	CCNGG	1 cut(s)	485
TaaI	ACNGT	1 cut(s)	531
TaiI	ACGT	2 cut(s)	461, 756
TaqI	TCGA	4 cut(s)	26, 507, 561, 692
TatI	WGTACW	1 cut(s)	520
TauI	GCSGC	2 cut(s)	92, 146
TfiI	GAWTC	3 cut(s)	168, 445, 492
Tru1I	TTAA	2 cut(s)	360, 756
Tru9I	TTAA	2 cut(s)	360, 756
TscAI	CASTG	1 cut(s)	629
TseFI	GTSAC	1 cut(s)	459
TseI	GCWGC	1 cut(s)	43
Tsp45I	GTSAC	1 cut(s)	459
TspDTI	ATGAA	5 cut(s)	17, 146, 209, 437, 715
TspGWI	ACGGA	2 cut(s)	344, 666
TspRI	CASTG	1 cut(s)	629
VneI	GTGCAC	1 cut(s)	618
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XmnI	GAANNNNTTC	2 cut(s)	62, 153
XspI	CTAG	2 cut(s)	254, 434
ZrmI	AGTACT	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.