Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009847

Physical Location & Seq

Genomic Coordinates Reverse (-)

14439653 .. 14441908

Gene Structure 2256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g10960.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGAGGGCTCCGAAGAGGCCGATCCACACCGTATGGACATGGGCGCGACGCCAGCCGTCCAAAGTTCAGGCCTTTCTGGCCGTCGTTTCGGGCATGGCGGCGCTGGTTCTGCTCCGATTCATCGTCCACGATCACGACAACCTCTTTGTTGCAGCTGAGGCTGTGCACTCGATTGGAATCTCCGTTCTTATCTACAAGCTCATGAAGGAGAAGACTTGCGCTGGGCTATCACTCAAATCGCAGGAACTGACAGCTATGTTTTTAGCTGTGAGATTATACTGTAGTGTAGTTATGGAATATGATATACACACCCTGCTAGATTTAGCTACGCTGGTGACGACCCTCTGGGTCATTTATATGATCCGGTTCAACTTAAAGTCGAGTTACATGGAGGACAAGGACAACTTCGCAATATATTATGTTGTGGTTCCATGTGCTCTACTAGCTCTGTTTATTCATCCATCAACTTCTCATCATTTGTTGAACAGGATTTCCTGGGCATTTTGTGTGTATCTGGAAGCTGTTTCAGTACTGCCTCAGTTGCGGGTCATGCAAAACACAAAGATTGTTGAGCCATTCACAGCACACTACGTGTTTGCACTGGGCGTCGCAAGGTTCCTCAGCTGTGCCCATTGGGTTCTACAGGTATTAGATACACGAGGGCACTTGCTTGTAGCCTTGGGCTATGGGTTATGGCCTTCCATGGTTCTTATTTCAGAAATTGTCCAGACTTTCATATTAGCAGACTTCTGTTACTACTACATTAAAAGTGTTTTCGGAGGGCAGCTTGTCCTGCGTCTCCCTTCCGGAGTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05110 map05110

Pfam Domains

Protein Families

ER_lumen_recept

Protein Analysis

273

Amino Acids

30.86

Weight (kDa)

8.99

Isoelectric Point (pI)

31.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21190 AT4G38790
fragaria_vesca	FvH4_2g02100
malus_domestica	MD05G1115100.v1.1 MD10G1116900.v1.1
prunus_persica	Prupe.8G159700_v2.0.a1 Prupe.8G159700_v2.0.a1 Prupe.8G159700_v2.0.a1
pyrus_communis	pycom05g10960 pycom10g10150
rosa_chinensis	RchiOBHm_Chr6g0245611
rosa_laevigata	RLG00000015300
rosa_multiflora	Rmu_co7981042.1_g000001 Rmu_sc0001341.1_g000004
rosa_roxburghii	Rroxscaffold_7G00215230
rosa_rugosa	Rorug05G0515000.1
rosa_samantha	Rh6AG029800 Rh6BG027000 Rh6CG026400 Rh6DG025900
rosa_wichuraiana	Rw6G002540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	46
AccIII	TCCGGA	1 cut(s)	806
AciI	CCGC	2 cut(s)	98, 544
AclWI	GGATC	2 cut(s)	16, 355
AcoI	YGGCCR	1 cut(s)	78
AcyI	GRCGYC	2 cut(s)	49, 606
AdeI	CACNNNGTG	1 cut(s)	592
AfaI	GTAC	1 cut(s)	531
AflIII	ACRYGT	1 cut(s)	591
AgsI	TTSAA	2 cut(s)	370, 484
AjnI	CCWGG	1 cut(s)	494
AloI	GAACNNNNNNTCC	4 cut(s)	168, 200, 476, 508
AluBI	AGCT	9 cut(s)	155, 199, 254, 266, 326, 446, 521, 624, 787
AluI	AGCT	9 cut(s)	155, 199, 254, 266, 326, 446, 521, 624, 787
Alw21I	GWGCWC	2 cut(s)	168, 439
Alw26I	GTCTC	1 cut(s)	803
Alw44I	GTGCAC	1 cut(s)	164
AlwI	GGATC	2 cut(s)	16, 355
AlwNI	CAGNNNCTG	1 cut(s)	247
Aor13HI	TCCGGA	1 cut(s)	806
AoxI	GGCC	4 cut(s)	17, 69, 78, 695
ApaLI	GTGCAC	1 cut(s)	164
ApeKI	GCWGC	2 cut(s)	152, 784
ArsI	GACNNNNNNTTYG	2 cut(s)	128, 160
AspLEI	GCGC	3 cut(s)	46, 103, 221
AsuHPI	GGTGA	1 cut(s)	346
BaeGI	GKGCMC	3 cut(s)	168, 631, 666
BanII	GRGCYC	1 cut(s)	10
BauI	CACGAG	1 cut(s)	657
BbsI	GAAGAC	1 cut(s)	218
Bbv12I	GWGCWC	2 cut(s)	168, 439
BbvCI	CCTCAGC	2 cut(s)	156, 620
BbvI	GCAGC	2 cut(s)	164, 796
BccI	CCATC	1 cut(s)	469
BceAI	ACGGC	2 cut(s)	40, 65
BciT130I	CCWGG	1 cut(s)	496
BcoDI	GTCTC	1 cut(s)	803
BfaI	CTAG	2 cut(s)	317, 443
BfmI	CTRYAG	2 cut(s)	280, 641
BfoI	RGCGCY	1 cut(s)	104
BglI	GCCNNNNNGGC	1 cut(s)	77
BisI	GCNGC	3 cut(s)	99, 153, 785
BlsI	GCNGC	3 cut(s)	100, 154, 786
BmcAI	AGTACT	1 cut(s)	531
Bme1390I	CCNGG	1 cut(s)	496
BmiI	GGNNCC	3 cut(s)	9, 429, 617
BmrFI	CCNGG	1 cut(s)	496
BmrI	ACTGGG	1 cut(s)	611
BmuI	ACTGGG	1 cut(s)	611
BpiI	GAAGAC	1 cut(s)	218
Bpu10I	CCTNAGC	2 cut(s)	156, 620
BsaAI	YACGTR	1 cut(s)	592
BsaBI	GATNNNNATC	1 cut(s)	176
BsaHI	GRCGYC	2 cut(s)	49, 606
BsaJI	CCNNGG	3 cut(s)	495, 678, 702
BsaWI	WCCGGW	2 cut(s)	363, 806
Bse1I	ACTGG	1 cut(s)	606
Bse8I	GATNNNNATC	1 cut(s)	176
BseAI	TCCGGA	1 cut(s)	806
BseBI	CCWGG	1 cut(s)	496
BseDI	CCNNGG	3 cut(s)	495, 678, 702
BseGI	GGATG	1 cut(s)	457
BseJI	GATNNNNATC	1 cut(s)	176
BseMII	CTCAG	3 cut(s)	147, 551, 634
BseNI	ACTGG	1 cut(s)	606
BseSI	GKGCMC	3 cut(s)	168, 631, 666
BseXI	GCAGC	2 cut(s)	164, 796
BseYI	CCCAGC	1 cut(s)	221
Bsh1236I	CGCG	1 cut(s)	46
BshFI	GGCC	4 cut(s)	19, 71, 80, 697
BsiHKAI	GWGCWC	2 cut(s)	168, 439
BsiSI	CCGG	2 cut(s)	364, 807
BsmAI	GTCTC	1 cut(s)	803
BsmBI	CGTCTC	1 cut(s)	803
BsnI	GGCC	4 cut(s)	19, 71, 80, 697
Bsp1286I	GDGCHC	5 cut(s)	10, 168, 439, 631, 666
Bsp13I	TCCGGA	1 cut(s)	806
Bsp143I	GATC	3 cut(s)	21, 130, 360
Bsp19I	CCATGG	1 cut(s)	702
BspACI	CCGC	2 cut(s)	98, 544
BspANI	GGCC	4 cut(s)	19, 71, 80, 697
BspCNI	CTCAG	3 cut(s)	148, 550, 633
BspEI	TCCGGA	1 cut(s)	806
BspFNI	CGCG	1 cut(s)	46
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	3 cut(s)	9, 429, 617
BspPI	GGATC	2 cut(s)	16, 355
BsrI	ACTGG	1 cut(s)	606
BssECI	CCNNGG	3 cut(s)	495, 678, 702
BssMI	GATC	3 cut(s)	21, 130, 360
BssNI	GRCGYC	2 cut(s)	49, 606
BssSI	CACGAG	1 cut(s)	657
BssT1I	CCWWGG	2 cut(s)	678, 702
Bst2BI	CACGAG	1 cut(s)	657
Bst2UI	CCWGG	1 cut(s)	496
Bst4CI	ACNGT	2 cut(s)	31, 281
Bst6I	CTCTTC	1 cut(s)	8
BstACI	GRCGYC	2 cut(s)	49, 606
BstBAI	YACGTR	1 cut(s)	592
BstC8I	GCNNGC	1 cut(s)	53
BstDEI	CTNAG	3 cut(s)	156, 537, 620
BstDSI	CCRYGG	1 cut(s)	702
BstF5I	GGATG	1 cut(s)	457
BstFNI	CGCG	1 cut(s)	46
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	3 cut(s)	46, 103, 221
BstKTI	GATC	3 cut(s)	24, 133, 363
BstMAI	GTCTC	1 cut(s)	803
BstMBI	GATC	3 cut(s)	21, 130, 360
BstMWI	GCNNNNNNNGC	8 cut(s)	52, 77, 109, 158, 443, 541, 550, 793
BstNI	CCWGG	1 cut(s)	496
BstSCI	CCNGG	1 cut(s)	494
BstSFI	CTRYAG	2 cut(s)	280, 641
BstSLI	GKGCMC	3 cut(s)	168, 631, 666
BstUI	CGCG	1 cut(s)	46
BstV1I	GCAGC	2 cut(s)	164, 796
BstV2I	GAAGAC	1 cut(s)	218
BsuRI	GGCC	4 cut(s)	19, 71, 80, 697
BtgI	CCRYGG	1 cut(s)	702
BtsCI	GGATG	1 cut(s)	457
BtsIMutI	CAGTG	1 cut(s)	599
Cac8I	GCNNGC	1 cut(s)	53
CaiI	CAGNNNCTG	1 cut(s)	247
CciI	TCATGA	1 cut(s)	201
CfoI	GCGC	3 cut(s)	46, 103, 221
CseI	GACGC	3 cut(s)	57, 595, 785
Csp6I	GTAC	1 cut(s)	530
CviAII	CATG	7 cut(s)	39, 94, 202, 388, 432, 550, 703
CviQI	GTAC	1 cut(s)	530
DdeI	CTNAG	3 cut(s)	156, 537, 620
DpnI	GATC	3 cut(s)	23, 132, 362
DpnII	GATC	3 cut(s)	21, 130, 360
DraIII	CACNNNGTG	1 cut(s)	592
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
Eco130I	CCWWGG	2 cut(s)	678, 702
Eco147I	AGGCCT	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	494
EcoT14I	CCWWGG	2 cut(s)	678, 702
EcoT38I	GRGCYC	1 cut(s)	10
ErhI	CCWWGG	2 cut(s)	678, 702
Esp3I	CGTCTC	1 cut(s)	803
FaeI	CATG	7 cut(s)	42, 97, 205, 391, 435, 553, 706
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FatI	CATG	7 cut(s)	38, 93, 201, 387, 431, 549, 702
FauI	CCCGC	1 cut(s)	537
Fnu4HI	GCNGC	3 cut(s)	99, 153, 785
FokI	GGATG	1 cut(s)	444
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	3 cut(s)	99, 153, 785
FspBI	CTAG	2 cut(s)	317, 443
GlaI	GCGC	3 cut(s)	45, 102, 220
GluI	GCNGC	3 cut(s)	99, 153, 785
GsaI	CCCAGC	1 cut(s)	225
HaeII	RGCGCY	1 cut(s)	104
HaeIII	GGCC	4 cut(s)	19, 71, 80, 697
HapII	CCGG	2 cut(s)	364, 807
HgaI	GACGC	3 cut(s)	57, 595, 785
HhaI	GCGC	3 cut(s)	46, 103, 221
Hin1I	GRCGYC	2 cut(s)	49, 606
Hin1II	CATG	7 cut(s)	42, 97, 205, 391, 435, 553, 706
Hin6I	GCGC	3 cut(s)	44, 101, 219
HinP1I	GCGC	3 cut(s)	44, 101, 219
HinfI	GANTC	2 cut(s)	117, 177
HpaII	CCGG	2 cut(s)	364, 807
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	2 cut(s)	127, 166
Hpy188I	TCNGA	4 cut(s)	12, 116, 718, 779
Hpy188III	TCNNGA	5 cut(s)	134, 202, 515, 727, 807
Hpy8I	GTNNAC	2 cut(s)	127, 166
Hpy99I	CGWCG	3 cut(s)	51, 86, 611
HpyAV	CCTTC	3 cut(s)	199, 708, 813
HpyCH4III	ACNGT	2 cut(s)	31, 281
HpyCH4IV	ACGT	1 cut(s)	591
HpyCH4V	TGCA	4 cut(s)	152, 166, 553, 599
HpyF10VI	GCNNNNNNNGC	8 cut(s)	52, 77, 109, 158, 443, 541, 550, 793
HpyF3I	CTNAG	3 cut(s)	156, 537, 620
HpySE526I	ACGT	1 cut(s)	591
Hsp92I	GRCGYC	2 cut(s)	49, 606
Hsp92II	CATG	7 cut(s)	42, 97, 205, 391, 435, 553, 706
HspAI	GCGC	3 cut(s)	44, 101, 219
Kpn2I	TCCGGA	1 cut(s)	806
Kzo9I	GATC	3 cut(s)	21, 130, 360
LmnI	GCTCC	2 cut(s)	13, 117
Lsp1109I	GCAGC	2 cut(s)	164, 796
MaeI	CTAG	2 cut(s)	317, 443
MaeII	ACGT	1 cut(s)	591
MaeIII	GTNAC	3 cut(s)	334, 383, 752
MalI	GATC	3 cut(s)	23, 132, 362
MboI	GATC	3 cut(s)	21, 130, 360
MboII	GAAGA	2 cut(s)	25, 223
MhlI	GDGCHC	5 cut(s)	10, 168, 439, 631, 666
MluCI	AATT	1 cut(s)	720
MnlI	CCTC	9 cut(s)	9, 151, 152, 353, 385, 546, 629, 653, 773
MroI	TCCGGA	1 cut(s)	806
MseI	TTAA	2 cut(s)	374, 765
MslI	CAYNNNNRTG	1 cut(s)	356
MspA1I	CMGCKG	2 cut(s)	155, 624
MspI	CCGG	2 cut(s)	364, 807
MspR9I	CCNGG	1 cut(s)	496
MvaI	CCWGG	1 cut(s)	496
MvnI	CGCG	1 cut(s)	46
MwoI	GCNNNNNNNGC	8 cut(s)	52, 77, 109, 158, 443, 541, 550, 793
NcoI	CCATGG	1 cut(s)	702
NdeII	GATC	3 cut(s)	21, 130, 360
NlaIII	CATG	7 cut(s)	42, 97, 205, 391, 435, 553, 706
NlaIV	GGNNCC	3 cut(s)	9, 429, 617
NmuCI	GTSAC	1 cut(s)	334
PagI	TCATGA	1 cut(s)	201
PceI	AGGCCT	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	1 cut(s)	335
PfeI	GAWTC	2 cut(s)	117, 177
PkrI	GCNGC	3 cut(s)	100, 154, 786
Ppu21I	YACGTR	1 cut(s)	592
Psp6I	CCWGG	1 cut(s)	494
PspFI	CCCAGC	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	494
PspN4I	GGNNCC	3 cut(s)	9, 429, 617
PstNI	CAGNNNCTG	1 cut(s)	247
PvuII	CAGCTG	2 cut(s)	155, 624
RsaI	GTAC	1 cut(s)	531
RsaNI	GTAC	1 cut(s)	530
RseI	CAYNNNNRTG	1 cut(s)	356
SaqAI	TTAA	2 cut(s)	374, 765
SatI	GCNGC	3 cut(s)	99, 153, 785
Sau3AI	GATC	3 cut(s)	21, 130, 360
ScaI	AGTACT	1 cut(s)	531
ScrFI	CCNGG	1 cut(s)	496
SduI	GDGCHC	5 cut(s)	10, 168, 439, 631, 666
SfcI	CTRYAG	2 cut(s)	280, 641
SfiI	GGCCNNNNNGGCC	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	356
Sse9I	AATT	1 cut(s)	720
SseBI	AGGCCT	1 cut(s)	71
SsiI	CCGC	2 cut(s)	98, 544
SspMI	CTAG	2 cut(s)	317, 443
StuI	AGGCCT	1 cut(s)	71
StyD4I	CCNGG	1 cut(s)	494
StyI	CCWWGG	2 cut(s)	678, 702
TaaI	ACNGT	2 cut(s)	31, 281
TaiI	ACGT	1 cut(s)	594
TaqI	TCGA	2 cut(s)	170, 380
TasI	AATT	1 cut(s)	720
TatI	WGTACW	1 cut(s)	529
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	2 cut(s)	117, 177
Tru1I	TTAA	2 cut(s)	374, 765
Tru9I	TTAA	2 cut(s)	374, 765
TscAI	CASTG	1 cut(s)	606
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	2 cut(s)	152, 784
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	4 cut(s)	109, 218, 446, 724
TspGWI	ACGGA	1 cut(s)	172
TspRI	CASTG	1 cut(s)	606
VneI	GTGCAC	1 cut(s)	164
XspI	CTAG	2 cut(s)	317, 443
ZrmI	AGTACT	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.