AT4G38790

ER lumen protein retaining receptor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0009847
Physical Location & Seq
Forward (+)
18111336 .. 18113206
1871 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38790.1

Sequence Viewer

Length: 822 bp
ATGAAGGCGACGACGAAGACTCCGATCCACGTGGTGTGGTCATGGGTTAGGAGACAACCTCCGAAGGTGAAGGCTTTTCTCGCCGTGGTCACTGGCATGGCGGCTTTGGTTCTTCTCAGATTCATTGTTCACGATCACGACAATCTCTTCGTTGCCGCTGAGGCTGTTCATTCCATCGGGATCTGTGTGCTCATCTACAAACTCATGAAGGAGAAGACCTGTGCCGGATTGTCACTGAAATCTCAGGAGCTTACGGCGATATTTTTAGCTGTTAGGCTGTATTGTAGCATTGTAATGGAATATGATATACATACCATTCTTGACTTGGCTACTTTGGGAACAACTCTCTGGGTTATATTTATGATTCGTTTCAAGTTAAGAGCTAGTTACATGGAGGACAAAGACAACTTTCCTCTCTATTATGTGCTTGCGCCCTGTGTTGCATTAGCTGTGTTCATCCATCCATCGACCTCTCATAACATAATAAACAGAATTTCATGGGCTTTATGTGTATACCTTGAAGCTGTTTCAGTACTACCTCAGCTACGAGTGATGCAGAACACAAAGATTGTTGAACCGTTCACGGCTCATTATGTTTTTGCACTTGGAGTAGCAAGGTTCCTCAGCTGTGCCCACTGGGTTTTACAGGTTGTGGACACGCGGGGACGGTTGCTTGTAGCATTGGGTTATGGATTGTGGCCATCAATGGTTCTGATCTCAGAAATTGTTCAAACTTTCATCTTGGCAGATTTCTGTTACTACTACGTCAAAAGCGTTTTCGGAGGCCAGCTTGTTCTCCGGCTACCGTCTGGAGTAGTATAA

Protein Analysis

273

Amino Acids

30.81

Weight (kDa)

9.14

Isoelectric Point (pI)

30.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ER_lumen_recept PF00810 73 - 215 2.7e-43 ER lumen protein retaining receptor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 513
AccII CGCG 1 cut(s) 661
AciI CCGC 3 cut(s) 101, 156, 661
AclWI GGATC 2 cut(s) 19, 188
AcoI YGGCCR 1 cut(s) 698
AcsI RAATTY 1 cut(s) 492
AcvI CACGTG 1 cut(s) 31
AdeI CACNNNGTG 1 cut(s) 34
AfaI GTAC 1 cut(s) 534
AgsI TTSAA 4 cut(s) 373, 521, 575, 731
AluBI AGCT 8 cut(s) 250, 269, 383, 449, 524, 544, 627, 790
AluI AGCT 8 cut(s) 250, 269, 383, 449, 524, 544, 627, 790
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 2 cut(s) 19, 188
AoxI GGCC 2 cut(s) 698, 784
ApoI RAATTY 1 cut(s) 492
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
Asp700I GAANNNNTTC 1 cut(s) 726
AspLEI GCGC 1 cut(s) 433
AsuHPI GGTGA 1 cut(s) 79
BaeGI GKGCMC 1 cut(s) 634
BalI TGGCCA 1 cut(s) 700
BbrPI CACGTG 1 cut(s) 31
BbsI GAAGAC 2 cut(s) 23, 221
Bbv12I GWGCWC 1 cut(s) 192
BbvCI CCTCAGC 3 cut(s) 159, 540, 623
BccI CCATC 4 cut(s) 182, 468, 472, 709
BceAI ACGGC 3 cut(s) 68, 270, 600
BcoDI GTCTC 1 cut(s) 46
BfaI CTAG 1 cut(s) 384
BglI GCCNNNNNGGC 1 cut(s) 161
BisI GCNGC 2 cut(s) 102, 156
BlsI GCNGC 2 cut(s) 103, 157
BmcAI AGTACT 1 cut(s) 534
BmiI GGNNCC 1 cut(s) 620
BmrI ACTGGG 1 cut(s) 646
BmsI GCATC 1 cut(s) 543
BmuI ACTGGG 1 cut(s) 646
BpiI GAAGAC 2 cut(s) 23, 221
BplI GAGNNNNNCTC 2 cut(s) 43, 75
Bpu10I CCTNAGC 3 cut(s) 159, 540, 623
BsaAI YACGTR 1 cut(s) 31
BsaJI CCNNGG 1 cut(s) 84
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bse1I ACTGG 2 cut(s) 97, 641
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 2 cut(s) 456, 460
BseMII CTCAG 6 cut(s) 130, 150, 257, 554, 637, 732
BseNI ACTGG 2 cut(s) 97, 641
BseSI GKGCMC 1 cut(s) 634
Bsh1236I CGCG 1 cut(s) 661
BshFI GGCC 2 cut(s) 700, 786
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 2 cut(s) 225, 799
BslFI GGGAC 1 cut(s) 678
BsmAI GTCTC 1 cut(s) 46
BsmFI GGGAC 1 cut(s) 678
BsnI GGCC 2 cut(s) 700, 786
Bsp1286I GDGCHC 2 cut(s) 192, 634
Bsp143I GATC 4 cut(s) 24, 133, 180, 714
BspACI CCGC 3 cut(s) 101, 156, 661
BspANI GGCC 2 cut(s) 700, 786
BspCNI CTCAG 6 cut(s) 129, 151, 256, 553, 636, 731
BspFNI CGCG 1 cut(s) 661
BspHI TCATGA 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 620
BspPI GGATC 2 cut(s) 19, 188
BsrI ACTGG 2 cut(s) 97, 641
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 4 cut(s) 24, 133, 180, 714
BssNAI GTATAC 1 cut(s) 514
Bst1107I GTATAC 1 cut(s) 514
Bst4CI ACNGT 3 cut(s) 579, 669, 807
Bst6I CTCTTC 1 cut(s) 152
BstBAI YACGTR 1 cut(s) 31
BstC8I GCNNGC 2 cut(s) 429, 788
BstDEI CTNAG 6 cut(s) 116, 159, 243, 540, 623, 718
BstDSI CCRYGG 1 cut(s) 84
BstF5I GGATG 2 cut(s) 456, 460
BstFNI CGCG 1 cut(s) 661
BstHHI GCGC 1 cut(s) 433
BstKTI GATC 4 cut(s) 27, 136, 183, 717
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 4 cut(s) 24, 133, 180, 714
BstMWI GCNNNNNNNGC 2 cut(s) 80, 161
BstSLI GKGCMC 1 cut(s) 634
BstUI CGCG 1 cut(s) 661
BstV2I GAAGAC 2 cut(s) 23, 221
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
BstZ17I GTATAC 1 cut(s) 514
BsuRI GGCC 2 cut(s) 700, 786
BtgI CCRYGG 1 cut(s) 84
BtsCI GGATG 2 cut(s) 456, 460
BtsIMutI CAGTG 3 cut(s) 90, 233, 634
Cac8I GCNNGC 2 cut(s) 429, 788
CciI TCATGA 1 cut(s) 204
CfoI GCGC 1 cut(s) 433
Csp6I GTAC 1 cut(s) 533
CviAII CATG 5 cut(s) 42, 97, 205, 391, 498
CviQI GTAC 1 cut(s) 533
DdeI CTNAG 6 cut(s) 116, 159, 243, 540, 623, 718
DpnI GATC 4 cut(s) 26, 135, 182, 716
DpnII GATC 4 cut(s) 24, 133, 180, 714
DraIII CACNNNGTG 1 cut(s) 34
EaeI YGGCCR 1 cut(s) 698
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco72I CACGTG 1 cut(s) 31
FaeI CATG 5 cut(s) 45, 100, 208, 394, 501
FaqI GGGAC 1 cut(s) 678
FatI CATG 5 cut(s) 41, 96, 204, 390, 497
FauI CCCGC 1 cut(s) 654
FblI GTMKAC 1 cut(s) 513
Fnu4HI GCNGC 2 cut(s) 102, 156
FokI GGATG 2 cut(s) 443, 447
Fsp4HI GCNGC 2 cut(s) 102, 156
FspBI CTAG 1 cut(s) 384
GlaI GCGC 1 cut(s) 432
GluI GCNGC 2 cut(s) 102, 156
HaeIII GGCC 2 cut(s) 700, 786
HapII CCGG 2 cut(s) 225, 799
HhaI GCGC 1 cut(s) 433
Hin1II CATG 5 cut(s) 45, 100, 208, 394, 501
Hin6I GCGC 1 cut(s) 431
HinP1I GCGC 1 cut(s) 431
HinfI GANTC 3 cut(s) 19, 120, 364
HpaII CCGG 2 cut(s) 225, 799
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 4 cut(s) 130, 514, 582, 655
Hpy188I TCNGA 6 cut(s) 24, 63, 119, 714, 721, 782
Hpy188III TCNNGA 7 cut(s) 131, 137, 178, 205, 245, 320, 810
Hpy8I GTNNAC 4 cut(s) 130, 514, 582, 655
Hpy99I CGWCG 2 cut(s) 13, 16
HpyAV CCTTC 3 cut(s) 58, 64, 202
HpyCH4III ACNGT 3 cut(s) 579, 669, 807
HpyCH4IV ACGT 2 cut(s) 30, 765
HpyCH4V TGCA 3 cut(s) 443, 556, 602
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 161
HpyF3I CTNAG 6 cut(s) 116, 159, 243, 540, 623, 718
HpySE526I ACGT 2 cut(s) 30, 765
Hsp92II CATG 5 cut(s) 45, 100, 208, 394, 501
HspAI GCGC 1 cut(s) 431
Kzo9I GATC 4 cut(s) 24, 133, 180, 714
LmnI GCTCC 1 cut(s) 247
LweI GCATC 1 cut(s) 543
MaeI CTAG 1 cut(s) 384
MaeII ACGT 2 cut(s) 30, 765
MaeIII GTNAC 4 cut(s) 88, 231, 386, 755
MalI GATC 4 cut(s) 26, 135, 182, 716
MboI GATC 4 cut(s) 24, 133, 180, 714
MboII GAAGA 4 cut(s) 28, 104, 139, 226
MflI RGATCY 1 cut(s) 180
MhlI GDGCHC 2 cut(s) 192, 634
MlsI TGGCCA 1 cut(s) 700
MluCI AATT 2 cut(s) 492, 723
MluNI TGGCCA 1 cut(s) 700
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 8 cut(s) 69, 154, 388, 423, 481, 549, 632, 776
Mox20I TGGCCA 1 cut(s) 700
MroXI GAANNNNTTC 1 cut(s) 726
MscI TGGCCA 1 cut(s) 700
MseI TTAA 1 cut(s) 377
MslI CAYNNNNRTG 2 cut(s) 95, 293
Msp20I TGGCCA 1 cut(s) 700
MspA1I CMGCKG 2 cut(s) 158, 627
MspI CCGG 2 cut(s) 225, 799
MvnI CGCG 1 cut(s) 661
MwoI GCNNNNNNNGC 2 cut(s) 80, 161
NdeII GATC 4 cut(s) 24, 133, 180, 714
NlaIII CATG 5 cut(s) 45, 100, 208, 394, 501
NlaIV GGNNCC 1 cut(s) 620
NmuCI GTSAC 2 cut(s) 88, 231
PagI TCATGA 1 cut(s) 204
PcsI WCGNNNNNNNCGW 2 cut(s) 20, 771
PdmI GAANNNNTTC 1 cut(s) 726
PfeI GAWTC 2 cut(s) 120, 364
PkrI GCNGC 2 cut(s) 103, 157
PleI GAGTC 1 cut(s) 13
PmaCI CACGTG 1 cut(s) 31
PmlI CACGTG 1 cut(s) 31
PpsI GAGTC 1 cut(s) 13
Ppu21I YACGTR 1 cut(s) 31
PspCI CACGTG 1 cut(s) 31
PspN4I GGNNCC 1 cut(s) 620
PsuI RGATCY 1 cut(s) 180
PvuII CAGCTG 1 cut(s) 627
RsaI GTAC 1 cut(s) 534
RsaNI GTAC 1 cut(s) 533
RseI CAYNNNNRTG 2 cut(s) 95, 293
SaqAI TTAA 1 cut(s) 377
SatI GCNGC 2 cut(s) 102, 156
Sau3AI GATC 4 cut(s) 24, 133, 180, 714
ScaI AGTACT 1 cut(s) 534
SchI GAGTC 1 cut(s) 13
SduI GDGCHC 2 cut(s) 192, 634
SfaNI GCATC 1 cut(s) 543
SmiMI CAYNNNNRTG 2 cut(s) 95, 293
Sse9I AATT 2 cut(s) 492, 723
SsiI CCGC 3 cut(s) 101, 156, 661
SspMI CTAG 1 cut(s) 384
TaaI ACNGT 3 cut(s) 579, 669, 807
TaiI ACGT 2 cut(s) 33, 768
TaqI TCGA 1 cut(s) 467
TasI AATT 2 cut(s) 492, 723
TatI WGTACW 1 cut(s) 532
TauI GCSGC 2 cut(s) 104, 158
TfiI GAWTC 2 cut(s) 120, 364
Tru1I TTAA 1 cut(s) 377
Tru9I TTAA 1 cut(s) 377
TscAI CASTG 3 cut(s) 97, 240, 641
TseFI GTSAC 2 cut(s) 88, 231
Tsp45I GTSAC 2 cut(s) 88, 231
TspDTI ATGAA 7 cut(s) 17, 112, 158, 221, 445, 486, 727
TspRI CASTG 3 cut(s) 97, 240, 641
XapI RAATTY 1 cut(s) 492
XcmI CCANNNNNNNNNTGG 1 cut(s) 322
XmiI GTMKAC 1 cut(s) 513
XmnI GAANNNNTTC 1 cut(s) 726
XspI CTAG 1 cut(s) 384
ZrmI AGTACT 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.