Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009847

Physical Location & Seq

Genomic Coordinates Reverse (-)

13448674 .. 13451097

Gene Structure 2424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g10150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAGGGCTCCGAAGAGGCCGATCCACACCGTATGGACATGGGCGCGACGCCAGCCGTCCAAAGTTCAGGCCTTTCTGGCCGTCGTTTCGGGCATGGCGGCGCTGGTTCTGCTCCGATTCATCGTCCACGATCACGACAATCTCTTTGTTGCAGCTGAGGCTGTGCACTCGATTGGAATCTCCGTACTTATATACAAGCTCATGAAGGAGAAGACTTGCGCTGGGCTATCACTCAAATCGCAGGAATTAACAGCTATGTTTTTAGCTGTGAGATTATATTGTAGTGTTGTTATGGAATATGATATACACACCCTGCTAGATTTAGCTACCCTGGTGACGACCCTCTGGGTTATTTATATGATCCGGTTCAACTTGAAGTCTAGTTACATGGAGGATAAAGACAACTTCGCAATATATTATGTCGTGGTACCATGTGCTCTTTTAGCCTTGTTTATTCATCCATCAACTTCTCATCATTTGCTGAACAGGATTTCCTGGGCATTTTGTGTGTATCTGGAAGCTGTTTCTGTACTGCCCCAGTTGCGGGTCATGCAAAACACAAAGATTGTTGAGCCATTCACAGCTCATTATGTGTTTGCACTGGGTGTCGCAAGGTTTCTCAGCTGTGCCCATTGGGTTCTCCAGGTATTAGATACTCGCGGACACTTGCTTGTAGCCTTGGGCTATGGGTTATGGCCATCCATGGTTCTTATTTCAGAAATTGTCCAGACTTTCATATTAGCAGACTTCTTGTTTTCGGAGGGCAGCTTGTCCTGCGTCTCCCTTCCGGAGTTGTATGAGTTATCTCCAGTTCTGCTTTGGTCTGCGAGCACACTGCCGTCAAAGACGTTAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05110 map05110

Pfam Domains

Protein Families

ER_lumen_recept

Protein Analysis

286

Amino Acids

32.19

Weight (kDa)

8.49

Isoelectric Point (pI)

34.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ER_lumen_recept	PF00810	72 - 214	1.2e-44	ER lumen protein retaining receptor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21190 AT4G38790
fragaria_vesca	FvH4_2g02100
malus_domestica	MD05G1115100.v1.1 MD10G1116900.v1.1
prunus_persica	Prupe.8G159700_v2.0.a1 Prupe.8G159700_v2.0.a1 Prupe.8G159700_v2.0.a1
pyrus_communis	pycom05g10960 pycom10g10150
rosa_chinensis	RchiOBHm_Chr6g0245611
rosa_laevigata	RLG00000015300
rosa_multiflora	Rmu_co7981042.1_g000001 Rmu_sc0001341.1_g000004
rosa_roxburghii	Rroxscaffold_7G00215230
rosa_rugosa	Rorug05G0515000.1
rosa_samantha	Rh6AG029800 Rh6BG027000 Rh6CG026400 Rh6DG025900
rosa_wichuraiana	Rw6G002540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	427
AccB1I	GGYRCC	1 cut(s)	427
AccII	CGCG	2 cut(s)	46, 660
AccIII	TCCGGA	1 cut(s)	787
AciI	CCGC	3 cut(s)	98, 544, 660
AclWI	GGATC	2 cut(s)	16, 355
AcoI	YGGCCR	2 cut(s)	78, 695
AcyI	GRCGYC	1 cut(s)	49
AdeI	CACNNNGTG	1 cut(s)	605
AfaI	GTAC	3 cut(s)	186, 429, 531
AfiI	CCNNNNNNNGG	2 cut(s)	543, 544
AgsI	TTSAA	2 cut(s)	370, 376
AjnI	CCWGG	3 cut(s)	330, 494, 642
AloI	GAACNNNNNNTCC	2 cut(s)	476, 508
AluBI	AGCT	9 cut(s)	155, 199, 254, 266, 326, 521, 584, 624, 768
AluI	AGCT	9 cut(s)	155, 199, 254, 266, 326, 521, 584, 624, 768
Alw21I	GWGCWC	3 cut(s)	168, 439, 833
Alw26I	GTCTC	1 cut(s)	784
Alw44I	GTGCAC	1 cut(s)	164
AlwI	GGATC	2 cut(s)	16, 355
Aor13HI	TCCGGA	1 cut(s)	787
AoxI	GGCC	4 cut(s)	17, 69, 78, 695
ApaLI	GTGCAC	1 cut(s)	164
ApeKI	GCWGC	2 cut(s)	152, 765
ArsI	GACNNNNNNTTYG	2 cut(s)	128, 160
Asp718I	GGTACC	1 cut(s)	427
AspLEI	GCGC	3 cut(s)	46, 103, 221
AsuHPI	GGTGA	1 cut(s)	346
BaeGI	GKGCMC	2 cut(s)	168, 631
BalI	TGGCCA	1 cut(s)	697
BanI	GGYRCC	1 cut(s)	427
BanII	GRGCYC	1 cut(s)	10
BarI	GAAGNNNNNNTAC	2 cut(s)	368, 400
BbsI	GAAGAC	1 cut(s)	218
Bbv12I	GWGCWC	3 cut(s)	168, 439, 833
BbvCI	CCTCAGC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	164, 777
BccI	CCATC	2 cut(s)	469, 706
BceAI	ACGGC	3 cut(s)	40, 65, 823
BcgI	CGANNNNNNTGC	2 cut(s)	817, 851
BciT130I	CCWGG	3 cut(s)	332, 496, 644
BcoDI	GTCTC	1 cut(s)	784
BfaI	CTAG	2 cut(s)	317, 381
BfoI	RGCGCY	1 cut(s)	104
BglI	GCCNNNNNGGC	1 cut(s)	77
BisI	GCNGC	3 cut(s)	99, 153, 766
BlsI	GCNGC	3 cut(s)	100, 154, 767
Bme1390I	CCNGG	3 cut(s)	332, 496, 644
BmiI	GGNNCC	2 cut(s)	9, 429
BmrFI	CCNGG	3 cut(s)	332, 496, 644
BmrI	ACTGGG	2 cut(s)	532, 611
BmuI	ACTGGG	2 cut(s)	532, 611
BpiI	GAAGAC	1 cut(s)	218
BpmI	CTGGAG	2 cut(s)	626, 792
Bpu10I	CCTNAGC	1 cut(s)	156
BsaBI	GATNNNNATC	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	49
BsaJI	CCNNGG	4 cut(s)	330, 495, 678, 702
BsaWI	WCCGGW	2 cut(s)	363, 787
Bsc4I	CCNNNNNNNGG	2 cut(s)	543, 544
Bse1I	ACTGG	3 cut(s)	538, 606, 809
Bse8I	GATNNNNATC	1 cut(s)	176
BseAI	TCCGGA	1 cut(s)	787
BseBI	CCWGG	3 cut(s)	332, 496, 644
BseDI	CCNNGG	4 cut(s)	330, 495, 678, 702
BseGI	GGATG	2 cut(s)	457, 698
BseJI	GATNNNNATC	1 cut(s)	176
BseLI	CCNNNNNNNGG	2 cut(s)	543, 544
BseMII	CTCAG	2 cut(s)	147, 634
BseNI	ACTGG	3 cut(s)	538, 606, 809
BseSI	GKGCMC	2 cut(s)	168, 631
BseXI	GCAGC	2 cut(s)	164, 777
BseYI	CCCAGC	1 cut(s)	221
Bsh1236I	CGCG	2 cut(s)	46, 660
BshFI	GGCC	4 cut(s)	19, 71, 80, 697
BshNI	GGYRCC	1 cut(s)	427
BsiHKAI	GWGCWC	3 cut(s)	168, 439, 833
BsiSI	CCGG	2 cut(s)	364, 788
BslI	CCNNNNNNNGG	2 cut(s)	543, 544
BsmAI	GTCTC	1 cut(s)	784
BsmBI	CGTCTC	1 cut(s)	784
BsnI	GGCC	4 cut(s)	19, 71, 80, 697
Bsp1286I	GDGCHC	5 cut(s)	10, 168, 439, 631, 833
Bsp13I	TCCGGA	1 cut(s)	787
Bsp143I	GATC	3 cut(s)	21, 130, 360
Bsp19I	CCATGG	1 cut(s)	702
BspACI	CCGC	3 cut(s)	98, 544, 660
BspANI	GGCC	4 cut(s)	19, 71, 80, 697
BspCNI	CTCAG	2 cut(s)	148, 633
BspEI	TCCGGA	1 cut(s)	787
BspFNI	CGCG	2 cut(s)	46, 660
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	2 cut(s)	9, 429
BspPI	GGATC	2 cut(s)	16, 355
BspT107I	GGYRCC	1 cut(s)	427
BsrI	ACTGG	3 cut(s)	538, 606, 809
BssECI	CCNNGG	4 cut(s)	330, 495, 678, 702
BssMI	GATC	3 cut(s)	21, 130, 360
BssNI	GRCGYC	1 cut(s)	49
BssT1I	CCWWGG	2 cut(s)	678, 702
Bst2UI	CCWGG	3 cut(s)	332, 496, 644
Bst4CI	ACNGT	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	8
BstACI	GRCGYC	1 cut(s)	49
BstC8I	GCNNGC	2 cut(s)	53, 829
BstDEI	CTNAG	2 cut(s)	156, 620
BstDSI	CCRYGG	1 cut(s)	702
BstF5I	GGATG	2 cut(s)	457, 698
BstFNI	CGCG	2 cut(s)	46, 660
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	3 cut(s)	46, 103, 221
BstKTI	GATC	3 cut(s)	24, 133, 363
BstMAI	GTCTC	1 cut(s)	784
BstMBI	GATC	3 cut(s)	21, 130, 360
BstMWI	GCNNNNNNNGC	8 cut(s)	52, 77, 109, 158, 443, 541, 550, 774
BstNI	CCWGG	3 cut(s)	332, 496, 644
BstSCI	CCNGG	3 cut(s)	330, 494, 642
BstSLI	GKGCMC	2 cut(s)	168, 631
BstUI	CGCG	2 cut(s)	46, 660
BstV1I	GCAGC	2 cut(s)	164, 777
BstV2I	GAAGAC	1 cut(s)	218
BsuRI	GGCC	4 cut(s)	19, 71, 80, 697
BtgI	CCRYGG	1 cut(s)	702
BtsCI	GGATG	2 cut(s)	457, 698
BtsI	GCAGTG	1 cut(s)	833
BtsIMutI	CAGTG	2 cut(s)	599, 833
Cac8I	GCNNGC	2 cut(s)	53, 829
CciI	TCATGA	1 cut(s)	201
CfoI	GCGC	3 cut(s)	46, 103, 221
CseI	GACGC	2 cut(s)	57, 766
Csp6I	GTAC	3 cut(s)	185, 428, 530
CviAII	CATG	7 cut(s)	39, 94, 202, 388, 432, 550, 703
CviQI	GTAC	3 cut(s)	185, 428, 530
DdeI	CTNAG	2 cut(s)	156, 620
DpnI	GATC	3 cut(s)	23, 132, 362
DpnII	GATC	3 cut(s)	21, 130, 360
DraIII	CACNNNGTG	1 cut(s)	605
EaeI	YGGCCR	2 cut(s)	78, 695
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
Eco130I	CCWWGG	2 cut(s)	678, 702
Eco147I	AGGCCT	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	10
EcoRII	CCWGG	3 cut(s)	330, 494, 642
EcoT14I	CCWWGG	2 cut(s)	678, 702
EcoT38I	GRGCYC	1 cut(s)	10
ErhI	CCWWGG	2 cut(s)	678, 702
Esp3I	CGTCTC	1 cut(s)	784
FaeI	CATG	7 cut(s)	42, 97, 205, 391, 435, 553, 706
FatI	CATG	7 cut(s)	38, 93, 201, 387, 431, 549, 702
FauI	CCCGC	1 cut(s)	537
Fnu4HI	GCNGC	3 cut(s)	99, 153, 766
FokI	GGATG	2 cut(s)	444, 685
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	3 cut(s)	99, 153, 766
FspBI	CTAG	2 cut(s)	317, 381
GlaI	GCGC	3 cut(s)	45, 102, 220
GluI	GCNGC	3 cut(s)	99, 153, 766
GsaI	CCCAGC	1 cut(s)	225
GsuI	CTGGAG	2 cut(s)	626, 792
HaeII	RGCGCY	1 cut(s)	104
HaeIII	GGCC	4 cut(s)	19, 71, 80, 697
HapII	CCGG	2 cut(s)	364, 788
HgaI	GACGC	2 cut(s)	57, 766
HhaI	GCGC	3 cut(s)	46, 103, 221
Hin1I	GRCGYC	1 cut(s)	49
Hin1II	CATG	7 cut(s)	42, 97, 205, 391, 435, 553, 706
Hin6I	GCGC	3 cut(s)	44, 101, 219
HinP1I	GCGC	3 cut(s)	44, 101, 219
HinfI	GANTC	2 cut(s)	117, 177
HpaII	CCGG	2 cut(s)	364, 788
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	2 cut(s)	127, 166
Hpy188I	TCNGA	4 cut(s)	12, 116, 718, 760
Hpy188III	TCNNGA	5 cut(s)	134, 202, 515, 727, 788
Hpy8I	GTNNAC	2 cut(s)	127, 166
Hpy99I	CGWCG	2 cut(s)	51, 86
HpyAV	CCTTC	2 cut(s)	199, 794
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	848
HpyCH4V	TGCA	4 cut(s)	152, 166, 553, 599
HpyF10VI	GCNNNNNNNGC	8 cut(s)	52, 77, 109, 158, 443, 541, 550, 774
HpyF3I	CTNAG	2 cut(s)	156, 620
HpySE526I	ACGT	1 cut(s)	848
Hsp92I	GRCGYC	1 cut(s)	49
Hsp92II	CATG	7 cut(s)	42, 97, 205, 391, 435, 553, 706
HspAI	GCGC	3 cut(s)	44, 101, 219
Kpn2I	TCCGGA	1 cut(s)	787
KpnI	GGTACC	1 cut(s)	431
Kzo9I	GATC	3 cut(s)	21, 130, 360
LmnI	GCTCC	2 cut(s)	13, 117
Lsp1109I	GCAGC	2 cut(s)	164, 777
MaeI	CTAG	2 cut(s)	317, 381
MaeII	ACGT	1 cut(s)	848
MaeIII	GTNAC	2 cut(s)	334, 383
MalI	GATC	3 cut(s)	23, 132, 362
MboI	GATC	3 cut(s)	21, 130, 360
MboII	GAAGA	2 cut(s)	25, 223
MhlI	GDGCHC	5 cut(s)	10, 168, 439, 631, 833
MlsI	TGGCCA	1 cut(s)	697
MluCI	AATT	2 cut(s)	245, 720
MluNI	TGGCCA	1 cut(s)	697
MnlI	CCTC	5 cut(s)	9, 151, 353, 385, 754
Mox20I	TGGCCA	1 cut(s)	697
MroI	TCCGGA	1 cut(s)	787
MscI	TGGCCA	1 cut(s)	697
MseI	TTAA	2 cut(s)	248, 851
Msp20I	TGGCCA	1 cut(s)	697
MspA1I	CMGCKG	2 cut(s)	155, 624
MspI	CCGG	2 cut(s)	364, 788
MspR9I	CCNGG	3 cut(s)	332, 496, 644
MvaI	CCWGG	3 cut(s)	332, 496, 644
MvnI	CGCG	2 cut(s)	46, 660
MwoI	GCNNNNNNNGC	8 cut(s)	52, 77, 109, 158, 443, 541, 550, 774
NcoI	CCATGG	1 cut(s)	702
NdeII	GATC	3 cut(s)	21, 130, 360
NlaIII	CATG	7 cut(s)	42, 97, 205, 391, 435, 553, 706
NlaIV	GGNNCC	2 cut(s)	9, 429
NmuCI	GTSAC	1 cut(s)	334
PagI	TCATGA	1 cut(s)	201
PceI	AGGCCT	1 cut(s)	71
PfeI	GAWTC	2 cut(s)	117, 177
PkrI	GCNGC	3 cut(s)	100, 154, 767
Psp6I	CCWGG	3 cut(s)	330, 494, 642
PspFI	CCCAGC	1 cut(s)	221
PspGI	CCWGG	3 cut(s)	330, 494, 642
PspN4I	GGNNCC	2 cut(s)	9, 429
PvuII	CAGCTG	2 cut(s)	155, 624
RsaI	GTAC	3 cut(s)	186, 429, 531
RsaNI	GTAC	3 cut(s)	185, 428, 530
SaqAI	TTAA	2 cut(s)	248, 851
SatI	GCNGC	3 cut(s)	99, 153, 766
Sau3AI	GATC	3 cut(s)	21, 130, 360
ScrFI	CCNGG	3 cut(s)	332, 496, 644
SduI	GDGCHC	5 cut(s)	10, 168, 439, 631, 833
SfiI	GGCCNNNNNGGCC	1 cut(s)	77
Sse9I	AATT	2 cut(s)	245, 720
SseBI	AGGCCT	1 cut(s)	71
SsiI	CCGC	3 cut(s)	98, 544, 660
SspMI	CTAG	2 cut(s)	317, 381
StuI	AGGCCT	1 cut(s)	71
StyD4I	CCNGG	3 cut(s)	330, 494, 642
StyI	CCWWGG	2 cut(s)	678, 702
TaaI	ACNGT	1 cut(s)	31
TaiI	ACGT	1 cut(s)	851
TaqI	TCGA	1 cut(s)	170
TasI	AATT	2 cut(s)	245, 720
TatI	WGTACW	1 cut(s)	529
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	2 cut(s)	117, 177
Tru1I	TTAA	2 cut(s)	248, 851
Tru9I	TTAA	2 cut(s)	248, 851
TscAI	CASTG	2 cut(s)	606, 840
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	2 cut(s)	152, 765
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	4 cut(s)	109, 218, 446, 724
TspGWI	ACGGA	1 cut(s)	172
TspRI	CASTG	2 cut(s)	606, 840
VneI	GTGCAC	1 cut(s)	164
XcmI	CCANNNNNNNNNTGG	1 cut(s)	816
XspI	CTAG	2 cut(s)	317, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.