Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7981042.1

Orthogroup ID

OG0009847

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 354

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7981042.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ccagaattggttcccttcttcataaatttttcccacacttttccggcgaaacccgatcaccggaaaattccgacgaatttcgaccccatgagggctccgaagacgccgatcaacaccgtgtcgacatgggtccggcgccaaccgccgaaagtgaagggctttctggccgtggtgaccggcatggcgactctggttctgctccgattcgtcgttcacgatcacgataacctcttcgtcgcagctgaggctgtgcactccgccggaatctccgtcctcatctataagctcatgaaggagaagacttgcgccggtaaaagttttcagctttttagggtttcgtttgattgggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05110 map05110

Pfam Domains

Protein Families

ER_lumen_recept

Protein Analysis

117

Amino Acids

13.28

Weight (kDa)

9.84

Isoelectric Point (pI)

19.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21190 AT4G38790
fragaria_vesca	FvH4_2g02100
malus_domestica	MD05G1115100.v1.1 MD10G1116900.v1.1
prunus_persica	Prupe.8G159700_v2.0.a1 Prupe.8G159700_v2.0.a1 Prupe.8G159700_v2.0.a1
pyrus_communis	pycom05g10960 pycom10g10150
rosa_chinensis	RchiOBHm_Chr6g0245611
rosa_laevigata	RLG00000015300
rosa_multiflora	Rmu_co7981042.1_g000001 Rmu_sc0001341.1_g000004
rosa_roxburghii	Rroxscaffold_7G00215230
rosa_rugosa	Rorug05G0515000.1
rosa_samantha	Rh6AG029800 Rh6BG027000 Rh6CG026400 Rh6DG025900
rosa_wichuraiana	Rw6G002540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	135
AccI	GTMKAC	1 cut(s)	122
AciI	CCGC	2 cut(s)	143, 258
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	3 cut(s)	25, 66, 76
AcyI	GRCGYC	2 cut(s)	104, 136
AfiI	CCNNNNNNNGG	2 cut(s)	60, 91
AluBI	AGCT	3 cut(s)	242, 286, 325
AluI	AGCT	3 cut(s)	242, 286, 325
Alw21I	GWGCWC	1 cut(s)	255
Alw44I	GTGCAC	1 cut(s)	251
AoxI	GGCC	1 cut(s)	165
ApaLI	GTGCAC	1 cut(s)	251
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	3 cut(s)	25, 66, 76
Asp700I	GAANNNNTTC	1 cut(s)	9
AspLEI	GCGC	2 cut(s)	138, 308
AspS9I	GGNCC	1 cut(s)	130
AsuHPI	GGTGA	2 cut(s)	50, 184
AvaII	GGWCC	1 cut(s)	130
BaeGI	GKGCMC	1 cut(s)	255
BanI	GGYRCC	1 cut(s)	135
BanII	GRGCYC	1 cut(s)	97
BbsI	GAAGAC	2 cut(s)	107, 305
Bbv12I	GWGCWC	1 cut(s)	255
BbvCI	CCTCAGC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	251
BceAI	ACGGC	1 cut(s)	152
BfoI	RGCGCY	1 cut(s)	139
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
Bme18I	GGWCC	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	4 cut(s)	12, 96, 131, 137
BoxI	GACNNNNGTC	1 cut(s)	128
BpiI	GAAGAC	2 cut(s)	107, 305
Bpu10I	CCTNAGC	1 cut(s)	243
BsaHI	GRCGYC	2 cut(s)	104, 136
BsaJI	CCNNGG	1 cut(s)	168
BsaWI	WCCGGW	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 91
Bse118I	RCCGGY	2 cut(s)	176, 308
BseDI	CCNNGG	1 cut(s)	168
BseLI	CCNNNNNNNGG	2 cut(s)	60, 91
BseMII	CTCAG	1 cut(s)	234
BseSI	GKGCMC	1 cut(s)	255
BseXI	GCAGC	1 cut(s)	251
BshFI	GGCC	1 cut(s)	167
BshNI	GGYRCC	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	255
BsiSI	CCGG	6 cut(s)	44, 61, 133, 177, 261, 309
BslI	CCNNNNNNNGG	2 cut(s)	60, 91
BsnI	GGCC	1 cut(s)	167
Bsp1286I	GDGCHC	2 cut(s)	97, 255
Bsp143I	GATC	3 cut(s)	55, 108, 217
BspACI	CCGC	2 cut(s)	143, 258
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	235
BspHI	TCATGA	1 cut(s)	288
BspLI	GGNNCC	4 cut(s)	12, 96, 131, 137
BspT107I	GGYRCC	1 cut(s)	135
BsrFI	RCCGGY	2 cut(s)	176, 308
BssAI	RCCGGY	2 cut(s)	176, 308
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	3 cut(s)	55, 108, 217
BssNI	GRCGYC	2 cut(s)	104, 136
Bst4CI	ACNGT	1 cut(s)	118
Bst6I	CTCTTC	1 cut(s)	236
BstACI	GRCGYC	2 cut(s)	104, 136
BstDEI	CTNAG	1 cut(s)	243
BstDSI	CCRYGG	1 cut(s)	168
BstEII	GGTNACC	1 cut(s)	172
BstH2I	RGCGCY	1 cut(s)	139
BstHHI	GCGC	2 cut(s)	138, 308
BstKTI	GATC	3 cut(s)	58, 111, 220
BstMBI	GATC	3 cut(s)	55, 108, 217
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 245
BstPAI	GACNNNNGTC	1 cut(s)	128
BstPI	GGTNACC	1 cut(s)	172
BstSLI	GKGCMC	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	251
BstV2I	GAAGAC	2 cut(s)	107, 305
BsuRI	GGCC	1 cut(s)	167
BtgI	CCRYGG	1 cut(s)	168
CciI	TCATGA	1 cut(s)	288
CfoI	GCGC	2 cut(s)	138, 308
Cfr10I	RCCGGY	2 cut(s)	176, 308
Cfr13I	GGNCC	1 cut(s)	130
CseI	GACGC	1 cut(s)	112
CviAII	CATG	4 cut(s)	88, 126, 181, 289
CviJI	RGCY	7 cut(s)	95, 159, 167, 242, 248, 286, 325
CviKI_1	RGCY	7 cut(s)	95, 159, 167, 242, 248, 286, 325
DdeI	CTNAG	1 cut(s)	243
DinI	GGCGCC	1 cut(s)	137
DpnI	GATC	3 cut(s)	57, 110, 219
DpnII	GATC	3 cut(s)	55, 108, 217
EaeI	YGGCCR	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
EciI	GGCGGA	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	130
Eco91I	GGTNACC	1 cut(s)	172
EcoO65I	GGTNACC	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	97
EgeI	GGCGCC	1 cut(s)	137
EheI	GGCGCC	1 cut(s)	137
FaeI	CATG	4 cut(s)	91, 129, 184, 292
FaiI	YATR	6 cut(s)	23, 89, 127, 182, 282, 290
FatI	CATG	4 cut(s)	87, 125, 180, 288
FblI	GTMKAC	1 cut(s)	122
Fnu4HI	GCNGC	1 cut(s)	240
FriOI	GRGCYC	1 cut(s)	97
Fsp4HI	GCNGC	1 cut(s)	240
GlaI	GCGC	2 cut(s)	137, 307
GluI	GCNGC	1 cut(s)	240
HaeII	RGCGCY	1 cut(s)	139
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	6 cut(s)	44, 61, 133, 177, 261, 309
HgaI	GACGC	1 cut(s)	112
HhaI	GCGC	2 cut(s)	138, 308
Hin1I	GRCGYC	2 cut(s)	104, 136
Hin1II	CATG	4 cut(s)	91, 129, 184, 292
Hin6I	GCGC	2 cut(s)	136, 306
HinP1I	GCGC	2 cut(s)	136, 306
HincII	GTYRAC	1 cut(s)	123
HindII	GTYRAC	1 cut(s)	123
HinfI	GANTC	3 cut(s)	187, 204, 264
HpaII	CCGG	6 cut(s)	44, 61, 133, 177, 261, 309
HphI	GGTGA	2 cut(s)	50, 184
Hpy166II	GTNNAC	3 cut(s)	123, 214, 253
Hpy188I	TCNGA	3 cut(s)	72, 99, 203
Hpy188III	TCNNGA	3 cut(s)	215, 221, 289
Hpy8I	GTNNAC	3 cut(s)	123, 214, 253
Hpy99I	CGWCG	3 cut(s)	76, 212, 239
HpyAV	CCTTC	3 cut(s)	25, 148, 286
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4V	TGCA	1 cut(s)	253
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 245
HpyF3I	CTNAG	1 cut(s)	243
Hsp92I	GRCGYC	2 cut(s)	104, 136
Hsp92II	CATG	4 cut(s)	91, 129, 184, 292
HspAI	GCGC	2 cut(s)	136, 306
KasI	GGCGCC	1 cut(s)	135
Kzo9I	GATC	3 cut(s)	55, 108, 217
LmnI	GCTCC	2 cut(s)	100, 204
LpnPI	CCDG	9 cut(s)	15, 57, 74, 146, 149, 176, 190, 274, 322
Lsp1109I	GCAGC	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	3 cut(s)	57, 110, 219
MboI	GATC	3 cut(s)	55, 108, 217
MboII	GAAGA	4 cut(s)	10, 112, 223, 310
MhlI	GDGCHC	2 cut(s)	97, 255
MluCI	AATT	4 cut(s)	5, 25, 66, 76
Mly113I	GGCGCC	1 cut(s)	136
MlyI	GAGTC	1 cut(s)	181
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	4 cut(s)	84, 238, 239, 284
MroXI	GAANNNNTTC	1 cut(s)	9
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	6 cut(s)	44, 61, 133, 177, 261, 309
MwoI	GCNNNNNNNGC	2 cut(s)	142, 245
NarI	GGCGCC	1 cut(s)	136
NdeII	GATC	3 cut(s)	55, 108, 217
NlaIII	CATG	4 cut(s)	91, 129, 184, 292
NlaIV	GGNNCC	4 cut(s)	12, 96, 131, 137
NmuCI	GTSAC	1 cut(s)	172
PagI	TCATGA	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	2 cut(s)	204, 264
PkrI	GCNGC	1 cut(s)	241
PleI	GAGTC	1 cut(s)	181
PluTI	GGCGCC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	181
PshAI	GACNNNNGTC	1 cut(s)	128
PspEI	GGTNACC	1 cut(s)	172
PspN4I	GGNNCC	4 cut(s)	12, 96, 131, 137
PspPI	GGNCC	1 cut(s)	130
PvuII	CAGCTG	1 cut(s)	242
SalI	GTCGAC	1 cut(s)	121
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	3 cut(s)	55, 108, 217
Sau96I	GGNCC	1 cut(s)	130
SchI	GAGTC	1 cut(s)	181
SduI	GDGCHC	2 cut(s)	97, 255
SetI	ASST	4 cut(s)	231, 244, 288, 327
SfoI	GGCGCC	1 cut(s)	137
SinI	GGWCC	1 cut(s)	130
Sse9I	AATT	4 cut(s)	5, 25, 66, 76
SsiI	CCGC	2 cut(s)	143, 258
SspDI	GGCGCC	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	118
TaqI	TCGA	2 cut(s)	81, 122
TasI	AATT	4 cut(s)	5, 25, 66, 76
TfiI	GAWTC	2 cut(s)	204, 264
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	10, 305
TspGWI	ACGGA	1 cut(s)	259
VneI	GTGCAC	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	130
XapI	RAATTY	3 cut(s)	25, 66, 76
XmiI	GTMKAC	1 cut(s)	122
XmnI	GAANNNNTTC	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.