Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0009847

Physical Location & Seq

Genomic Coordinates Reverse (-)

23627733 .. 23630801

Gene Structure 3069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1115100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGAGGGCTCCGAAGAGGCCGATCCACACCGTATGGACATGGGCGCGACGCCAGCCGTCCAAAGTTCAGGCCTTTCTGGCCGTTGTTTCGGGCATGGCGGCGCTGGTTCTGCTCCGATTCATCGTCCACGATCACGACAACCTCTTTGTTGCAGCTGAGGCTGTGCACTCGATTGGAATCTCCGTTCTTATCTACAAGCTCATGAAGGAGAAGACTTGCGCTGGGCTATCACTCAAATCGCAGGAACTGACAGCTATGTTTTTAGCTGTGAGATTATACTGTAGTGTAGTTATGGAATATGATATACACACCCTGCTAGATTTAGCTACGCTGGTGACGACCCTCTGGGTCATTTATATGATCCGGTTCAACTTAAAGTCTAGTTACATGGAGGACAAGGACAACTTCGCAATATATTATGTTGTGGTTCCATGTGCTCTACTAGCTCTGTTTATTCATCCATCAACTTCTCATCATTTGTTGAACAGGATTTCCTGGGCATTTTGTGTGTATCTGGAAGCTGTTTCCGTACTGCCTCAGTTGCGGGTCATGCAAAACACAAAGATTGTTGAGCCATTCACAGCACACTATGTGTTTGCACTGGGCGTCGCAAGGTTCCTCAGCTGTGCCCATTGGGTTCTCCAGGTATTAGATACACGTGGGCAGTTGCTTGTAGCCTTGGGCTATGGGTTATGGCCTTCCATGGTTCTTATTTCAGAAATTGTCCAGACTTTCATATTAGCAGACTTCTGTTACTACTACATTAAAAGTGTTTTCGGAGGGCAGCTTGTCCTGCGTCTCCCTTCTGGAGTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05110 map05110

Pfam Domains

Protein Families

ER_lumen_recept

Protein Analysis

273

Amino Acids

30.85

Weight (kDa)

8.99

Isoelectric Point (pI)

31.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ER_lumen_recept	PF00810	72 - 214	1.1e-44	ER lumen protein retaining receptor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21190 AT4G38790
fragaria_vesca	FvH4_2g02100
malus_domestica	MD05G1115100.v1.1 MD10G1116900.v1.1
prunus_persica	Prupe.8G159700_v2.0.a1 Prupe.8G159700_v2.0.a1 Prupe.8G159700_v2.0.a1
pyrus_communis	pycom05g10960 pycom10g10150
rosa_chinensis	RchiOBHm_Chr6g0245611
rosa_laevigata	RLG00000015300
rosa_multiflora	Rmu_co7981042.1_g000001 Rmu_sc0001341.1_g000004
rosa_roxburghii	Rroxscaffold_7G00215230
rosa_rugosa	Rorug05G0515000.1
rosa_samantha	Rh6AG029800 Rh6BG027000 Rh6CG026400 Rh6DG025900
rosa_wichuraiana	Rw6G002540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	46
AciI	CCGC	2 cut(s)	98, 544
AclWI	GGATC	2 cut(s)	16, 355
AcoI	YGGCCR	1 cut(s)	78
AcvI	CACGTG	1 cut(s)	659
AcyI	GRCGYC	2 cut(s)	49, 606
AdeI	CACNNNGTG	1 cut(s)	592
AfaI	GTAC	1 cut(s)	531
AflIII	ACRYGT	1 cut(s)	656
AgsI	TTSAA	2 cut(s)	370, 484
AjnI	CCWGG	2 cut(s)	494, 642
AloI	GAACNNNNNNTCC	4 cut(s)	168, 200, 476, 508
AluBI	AGCT	9 cut(s)	155, 199, 254, 266, 326, 446, 521, 624, 787
AluI	AGCT	9 cut(s)	155, 199, 254, 266, 326, 446, 521, 624, 787
Alw21I	GWGCWC	2 cut(s)	168, 439
Alw26I	GTCTC	1 cut(s)	803
Alw44I	GTGCAC	1 cut(s)	164
AlwI	GGATC	2 cut(s)	16, 355
AlwNI	CAGNNNCTG	1 cut(s)	247
AoxI	GGCC	4 cut(s)	17, 69, 78, 695
ApaLI	GTGCAC	1 cut(s)	164
ApeKI	GCWGC	2 cut(s)	152, 784
ArsI	GACNNNNNNTTYG	2 cut(s)	128, 160
AspLEI	GCGC	3 cut(s)	46, 103, 221
AsuHPI	GGTGA	1 cut(s)	346
BaeGI	GKGCMC	2 cut(s)	168, 631
BanII	GRGCYC	1 cut(s)	10
BbrPI	CACGTG	1 cut(s)	659
BbsI	GAAGAC	1 cut(s)	218
Bbv12I	GWGCWC	2 cut(s)	168, 439
BbvCI	CCTCAGC	2 cut(s)	156, 620
BbvI	GCAGC	2 cut(s)	164, 796
BccI	CCATC	1 cut(s)	469
BceAI	ACGGC	2 cut(s)	40, 65
BciT130I	CCWGG	2 cut(s)	496, 644
BcoDI	GTCTC	1 cut(s)	803
BfaI	CTAG	3 cut(s)	317, 381, 443
BfmI	CTRYAG	1 cut(s)	280
BfoI	RGCGCY	1 cut(s)	104
BglI	GCCNNNNNGGC	1 cut(s)	77
BisI	GCNGC	3 cut(s)	99, 153, 785
BlsI	GCNGC	3 cut(s)	100, 154, 786
Bme1390I	CCNGG	2 cut(s)	496, 644
BmiI	GGNNCC	3 cut(s)	9, 429, 617
BmrFI	CCNGG	2 cut(s)	496, 644
BmrI	ACTGGG	1 cut(s)	611
BmuI	ACTGGG	1 cut(s)	611
BpiI	GAAGAC	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	626
Bpu10I	CCTNAGC	2 cut(s)	156, 620
BsaAI	YACGTR	1 cut(s)	659
BsaBI	GATNNNNATC	1 cut(s)	176
BsaHI	GRCGYC	2 cut(s)	49, 606
BsaJI	CCNNGG	3 cut(s)	495, 678, 702
BsaWI	WCCGGW	1 cut(s)	363
Bse1I	ACTGG	1 cut(s)	606
Bse8I	GATNNNNATC	1 cut(s)	176
BseBI	CCWGG	2 cut(s)	496, 644
BseDI	CCNNGG	3 cut(s)	495, 678, 702
BseGI	GGATG	1 cut(s)	457
BseJI	GATNNNNATC	1 cut(s)	176
BseMII	CTCAG	3 cut(s)	147, 551, 634
BseNI	ACTGG	1 cut(s)	606
BseSI	GKGCMC	2 cut(s)	168, 631
BseXI	GCAGC	2 cut(s)	164, 796
BseYI	CCCAGC	1 cut(s)	221
Bsh1236I	CGCG	1 cut(s)	46
BshFI	GGCC	4 cut(s)	19, 71, 80, 697
BsiHKAI	GWGCWC	2 cut(s)	168, 439
BsiSI	CCGG	1 cut(s)	364
BsmAI	GTCTC	1 cut(s)	803
BsmBI	CGTCTC	1 cut(s)	803
BsnI	GGCC	4 cut(s)	19, 71, 80, 697
Bsp1286I	GDGCHC	4 cut(s)	10, 168, 439, 631
Bsp143I	GATC	3 cut(s)	21, 130, 360
Bsp19I	CCATGG	1 cut(s)	702
BspACI	CCGC	2 cut(s)	98, 544
BspANI	GGCC	4 cut(s)	19, 71, 80, 697
BspCNI	CTCAG	3 cut(s)	148, 550, 633
BspFNI	CGCG	1 cut(s)	46
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	3 cut(s)	9, 429, 617
BspPI	GGATC	2 cut(s)	16, 355
BsrI	ACTGG	1 cut(s)	606
BssECI	CCNNGG	3 cut(s)	495, 678, 702
BssMI	GATC	3 cut(s)	21, 130, 360
BssNI	GRCGYC	2 cut(s)	49, 606
BssT1I	CCWWGG	2 cut(s)	678, 702
Bst2UI	CCWGG	2 cut(s)	496, 644
Bst4CI	ACNGT	2 cut(s)	31, 281
Bst6I	CTCTTC	1 cut(s)	8
BstACI	GRCGYC	2 cut(s)	49, 606
BstBAI	YACGTR	1 cut(s)	659
BstC8I	GCNNGC	1 cut(s)	53
BstDEI	CTNAG	3 cut(s)	156, 537, 620
BstDSI	CCRYGG	1 cut(s)	702
BstF5I	GGATG	1 cut(s)	457
BstFNI	CGCG	1 cut(s)	46
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	3 cut(s)	46, 103, 221
BstKTI	GATC	3 cut(s)	24, 133, 363
BstMAI	GTCTC	1 cut(s)	803
BstMBI	GATC	3 cut(s)	21, 130, 360
BstMWI	GCNNNNNNNGC	8 cut(s)	52, 77, 109, 158, 443, 541, 550, 793
BstNI	CCWGG	2 cut(s)	496, 644
BstSCI	CCNGG	2 cut(s)	494, 642
BstSFI	CTRYAG	1 cut(s)	280
BstSLI	GKGCMC	2 cut(s)	168, 631
BstUI	CGCG	1 cut(s)	46
BstV1I	GCAGC	2 cut(s)	164, 796
BstV2I	GAAGAC	1 cut(s)	218
BsuRI	GGCC	4 cut(s)	19, 71, 80, 697
BtgI	CCRYGG	1 cut(s)	702
BtsCI	GGATG	1 cut(s)	457
BtsIMutI	CAGTG	1 cut(s)	599
Cac8I	GCNNGC	1 cut(s)	53
CaiI	CAGNNNCTG	1 cut(s)	247
CciI	TCATGA	1 cut(s)	201
CfoI	GCGC	3 cut(s)	46, 103, 221
CseI	GACGC	3 cut(s)	57, 595, 785
Csp6I	GTAC	1 cut(s)	530
CviAII	CATG	7 cut(s)	39, 94, 202, 388, 432, 550, 703
CviQI	GTAC	1 cut(s)	530
DdeI	CTNAG	3 cut(s)	156, 537, 620
DpnI	GATC	3 cut(s)	23, 132, 362
DpnII	GATC	3 cut(s)	21, 130, 360
DraIII	CACNNNGTG	1 cut(s)	592
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
Eco130I	CCWWGG	2 cut(s)	678, 702
Eco147I	AGGCCT	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	10
Eco72I	CACGTG	1 cut(s)	659
EcoRII	CCWGG	2 cut(s)	494, 642
EcoT14I	CCWWGG	2 cut(s)	678, 702
EcoT38I	GRGCYC	1 cut(s)	10
ErhI	CCWWGG	2 cut(s)	678, 702
Esp3I	CGTCTC	1 cut(s)	803
FaeI	CATG	7 cut(s)	42, 97, 205, 391, 435, 553, 706
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FatI	CATG	7 cut(s)	38, 93, 201, 387, 431, 549, 702
FauI	CCCGC	1 cut(s)	537
Fnu4HI	GCNGC	3 cut(s)	99, 153, 785
FokI	GGATG	1 cut(s)	444
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	3 cut(s)	99, 153, 785
FspBI	CTAG	3 cut(s)	317, 381, 443
GlaI	GCGC	3 cut(s)	45, 102, 220
GluI	GCNGC	3 cut(s)	99, 153, 785
GsaI	CCCAGC	1 cut(s)	225
GsuI	CTGGAG	1 cut(s)	626
HaeII	RGCGCY	1 cut(s)	104
HaeIII	GGCC	4 cut(s)	19, 71, 80, 697
HapII	CCGG	1 cut(s)	364
HgaI	GACGC	3 cut(s)	57, 595, 785
HhaI	GCGC	3 cut(s)	46, 103, 221
Hin1I	GRCGYC	2 cut(s)	49, 606
Hin1II	CATG	7 cut(s)	42, 97, 205, 391, 435, 553, 706
Hin6I	GCGC	3 cut(s)	44, 101, 219
HinP1I	GCGC	3 cut(s)	44, 101, 219
HinfI	GANTC	2 cut(s)	117, 177
HpaII	CCGG	1 cut(s)	364
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	2 cut(s)	127, 166
Hpy188I	TCNGA	4 cut(s)	12, 116, 718, 779
Hpy188III	TCNNGA	5 cut(s)	134, 202, 515, 727, 807
Hpy8I	GTNNAC	2 cut(s)	127, 166
Hpy99I	CGWCG	2 cut(s)	51, 611
HpyAV	CCTTC	3 cut(s)	199, 708, 813
HpyCH4III	ACNGT	2 cut(s)	31, 281
HpyCH4IV	ACGT	1 cut(s)	658
HpyCH4V	TGCA	4 cut(s)	152, 166, 553, 599
HpyF10VI	GCNNNNNNNGC	8 cut(s)	52, 77, 109, 158, 443, 541, 550, 793
HpyF3I	CTNAG	3 cut(s)	156, 537, 620
HpySE526I	ACGT	1 cut(s)	658
Hsp92I	GRCGYC	2 cut(s)	49, 606
Hsp92II	CATG	7 cut(s)	42, 97, 205, 391, 435, 553, 706
HspAI	GCGC	3 cut(s)	44, 101, 219
Kzo9I	GATC	3 cut(s)	21, 130, 360
LmnI	GCTCC	2 cut(s)	13, 117
Lsp1109I	GCAGC	2 cut(s)	164, 796
MaeI	CTAG	3 cut(s)	317, 381, 443
MaeII	ACGT	1 cut(s)	658
MaeIII	GTNAC	3 cut(s)	334, 383, 752
MalI	GATC	3 cut(s)	23, 132, 362
MboI	GATC	3 cut(s)	21, 130, 360
MboII	GAAGA	2 cut(s)	25, 223
MhlI	GDGCHC	4 cut(s)	10, 168, 439, 631
MluCI	AATT	1 cut(s)	720
MnlI	CCTC	8 cut(s)	9, 151, 152, 353, 385, 546, 629, 773
MseI	TTAA	2 cut(s)	374, 765
MslI	CAYNNNNRTG	1 cut(s)	356
MspA1I	CMGCKG	2 cut(s)	155, 624
MspI	CCGG	1 cut(s)	364
MspR9I	CCNGG	2 cut(s)	496, 644
MvaI	CCWGG	2 cut(s)	496, 644
MvnI	CGCG	1 cut(s)	46
MwoI	GCNNNNNNNGC	8 cut(s)	52, 77, 109, 158, 443, 541, 550, 793
NcoI	CCATGG	1 cut(s)	702
NdeII	GATC	3 cut(s)	21, 130, 360
NlaIII	CATG	7 cut(s)	42, 97, 205, 391, 435, 553, 706
NlaIV	GGNNCC	3 cut(s)	9, 429, 617
NmuCI	GTSAC	1 cut(s)	334
PagI	TCATGA	1 cut(s)	201
PceI	AGGCCT	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	1 cut(s)	335
PfeI	GAWTC	2 cut(s)	117, 177
PkrI	GCNGC	3 cut(s)	100, 154, 786
PmaCI	CACGTG	1 cut(s)	659
PmlI	CACGTG	1 cut(s)	659
Ppu21I	YACGTR	1 cut(s)	659
Psp6I	CCWGG	2 cut(s)	494, 642
PspCI	CACGTG	1 cut(s)	659
PspFI	CCCAGC	1 cut(s)	221
PspGI	CCWGG	2 cut(s)	494, 642
PspN4I	GGNNCC	3 cut(s)	9, 429, 617
PstNI	CAGNNNCTG	1 cut(s)	247
PvuII	CAGCTG	2 cut(s)	155, 624
RsaI	GTAC	1 cut(s)	531
RsaNI	GTAC	1 cut(s)	530
RseI	CAYNNNNRTG	1 cut(s)	356
SaqAI	TTAA	2 cut(s)	374, 765
SatI	GCNGC	3 cut(s)	99, 153, 785
Sau3AI	GATC	3 cut(s)	21, 130, 360
ScrFI	CCNGG	2 cut(s)	496, 644
SduI	GDGCHC	4 cut(s)	10, 168, 439, 631
SfcI	CTRYAG	1 cut(s)	280
SfiI	GGCCNNNNNGGCC	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	356
Sse9I	AATT	1 cut(s)	720
SseBI	AGGCCT	1 cut(s)	71
SsiI	CCGC	2 cut(s)	98, 544
SspMI	CTAG	3 cut(s)	317, 381, 443
StuI	AGGCCT	1 cut(s)	71
StyD4I	CCNGG	2 cut(s)	494, 642
StyI	CCWWGG	2 cut(s)	678, 702
TaaI	ACNGT	2 cut(s)	31, 281
TaiI	ACGT	1 cut(s)	661
TaqI	TCGA	1 cut(s)	170
TasI	AATT	1 cut(s)	720
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	2 cut(s)	117, 177
Tru1I	TTAA	2 cut(s)	374, 765
Tru9I	TTAA	2 cut(s)	374, 765
TscAI	CASTG	1 cut(s)	606
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	2 cut(s)	152, 784
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	4 cut(s)	109, 218, 446, 724
TspGWI	ACGGA	2 cut(s)	172, 517
TspRI	CASTG	1 cut(s)	606
VneI	GTGCAC	1 cut(s)	164
XspI	CTAG	3 cut(s)	317, 381, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.