Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009847

Physical Location & Seq

Genomic Coordinates Reverse (-)

16868973 .. 16871767

Gene Structure 2795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G159700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGAGGGCTCCGAAGAGGCCGATCCACACCGTATCGACATGGGTTCGACGCCAGCCGCCGAAAGTGAAGGCCTTTCTGGCCGTCGTAACGGGCATGGCGGCTCTGGTCGTGCTCCGATTTATCGTTCACGATCACGATAACCTCTTTGTTGCAGCTGAGGCTGTGCACTCAATTGGAATCATGGTCCTAATCTACAAGCTCACGAAGGAGAAGACTTGTGCTGGGTTATCACTCAAATCCCAGGAGTTAACAGCTATGTTTTTAGCTGTGAGATTGTATTGCAGTTTTGTGATGGAATATGATATACACACCCTGCTTGATTTAGCTACGCTGGTGACGACCCTCTGGGTTATTTATATGATCCGCTTCAACTTAAAGTCTAGTTACATGGAGGACAAAGACAATTTTGCAATATACTATGTCGTGGTACCATGTGCTCTTTTAGCTTTGTTCATTCATCCATCGACGTCTCATCATTTATTGAACAGGATTTCCTGGGCATTTTGTGTGTATCTGGAAGCTGTTTCTGTACTGCCCCAGTTGCGTGTCATGCAGAACACAAAGATTGTTGAGCCATTCACAGCTCATTATGTGTTTGCACTGGGTGTCGCAAGGTTCCTCAGTTGTGCCCATTGGGTTCTCCAGGTATTAGATACTCGCGGACACTTGCTTGTAGCCTTGGGCTACGGGTTATGGCCTTCTATGGTTCTTATTTCAGAAATTGTTCAGACTTTCATATTAGCAGACTTCTGTTACTACTATGTCAAAAGTGTTTTTGGAGGGCAGCTAGTCCTCCGTCTCCCTTCTGGAGTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05110 map05110

Pfam Domains

Protein Families

ER_lumen_recept

Protein Analysis

273

Amino Acids

30.84

Weight (kDa)

9.1

Isoelectric Point (pI)

31.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21190 AT4G38790
fragaria_vesca	FvH4_2g02100
malus_domestica	MD05G1115100.v1.1 MD10G1116900.v1.1
prunus_persica	Prupe.8G159700_v2.0.a1 Prupe.8G159700_v2.0.a1 Prupe.8G159700_v2.0.a1
pyrus_communis	pycom05g10960 pycom10g10150
rosa_chinensis	RchiOBHm_Chr6g0245611
rosa_laevigata	RLG00000015300
rosa_multiflora	Rmu_co7981042.1_g000001 Rmu_sc0001341.1_g000004
rosa_roxburghii	Rroxscaffold_7G00215230
rosa_rugosa	Rorug05G0515000.1
rosa_samantha	Rh6AG029800 Rh6BG027000 Rh6CG026400 Rh6DG025900
rosa_wichuraiana	Rw6G002540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	470
Acc65I	GGTACC	1 cut(s)	427
AccB1I	GGYRCC	1 cut(s)	427
AccII	CGCG	1 cut(s)	660
AciI	CCGC	4 cut(s)	56, 98, 364, 660
AclWI	GGATC	2 cut(s)	16, 355
AcoI	YGGCCR	1 cut(s)	78
AcyI	GRCGYC	2 cut(s)	49, 467
AdeI	CACNNNGTG	1 cut(s)	605
AfaI	GTAC	2 cut(s)	429, 531
AgsI	TTSAA	2 cut(s)	370, 484
AjnI	CCWGG	3 cut(s)	240, 494, 642
AloI	GAACNNNNNNTCC	2 cut(s)	476, 508
AluBI	AGCT	9 cut(s)	155, 199, 254, 266, 326, 446, 521, 584, 787
AluI	AGCT	9 cut(s)	155, 199, 254, 266, 326, 446, 521, 584, 787
Alw21I	GWGCWC	3 cut(s)	114, 168, 439
Alw26I	GTCTC	2 cut(s)	474, 803
Alw44I	GTGCAC	1 cut(s)	164
AlwI	GGATC	2 cut(s)	16, 355
AoxI	GGCC	4 cut(s)	17, 69, 78, 695
ApaLI	GTGCAC	1 cut(s)	164
ApeKI	GCWGC	2 cut(s)	152, 784
Asp700I	GAANNNNTTC	1 cut(s)	723
Asp718I	GGTACC	1 cut(s)	427
AspS9I	GGNCC	1 cut(s)	184
AsuHPI	GGTGA	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	184
BaeGI	GKGCMC	2 cut(s)	168, 631
BanI	GGYRCC	1 cut(s)	427
BanII	GRGCYC	1 cut(s)	10
BbsI	GAAGAC	1 cut(s)	218
Bbv12I	GWGCWC	3 cut(s)	114, 168, 439
BbvCI	CCTCAGC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	164, 796
BccI	CCATC	2 cut(s)	286, 469
BceAI	ACGGC	1 cut(s)	65
BciT130I	CCWGG	3 cut(s)	242, 496, 644
BcoDI	GTCTC	2 cut(s)	474, 803
BfaI	CTAG	2 cut(s)	381, 788
BglI	GCCNNNNNGGC	1 cut(s)	77
BisI	GCNGC	4 cut(s)	56, 99, 153, 785
BlsI	GCNGC	4 cut(s)	57, 100, 154, 786
Bme1390I	CCNGG	3 cut(s)	242, 496, 644
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	3 cut(s)	9, 429, 617
BmrFI	CCNGG	3 cut(s)	242, 496, 644
BmrI	ACTGGG	2 cut(s)	532, 611
BmuI	ACTGGG	2 cut(s)	532, 611
BpiI	GAAGAC	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	626
Bpu10I	CCTNAGC	1 cut(s)	156
BsaHI	GRCGYC	2 cut(s)	49, 467
BsaJI	CCNNGG	3 cut(s)	240, 495, 678
Bse1I	ACTGG	2 cut(s)	538, 606
BseBI	CCWGG	3 cut(s)	242, 496, 644
BseDI	CCNNGG	3 cut(s)	240, 495, 678
BseGI	GGATG	1 cut(s)	457
BseMII	CTCAG	2 cut(s)	147, 634
BseNI	ACTGG	2 cut(s)	538, 606
BseSI	GKGCMC	2 cut(s)	168, 631
BseXI	GCAGC	2 cut(s)	164, 796
BseYI	CCCAGC	1 cut(s)	221
Bsh1236I	CGCG	1 cut(s)	660
BshFI	GGCC	4 cut(s)	19, 71, 80, 697
BshNI	GGYRCC	1 cut(s)	427
BsiHKAI	GWGCWC	3 cut(s)	114, 168, 439
BsmAI	GTCTC	2 cut(s)	474, 803
BsmBI	CGTCTC	2 cut(s)	474, 803
BsnI	GGCC	4 cut(s)	19, 71, 80, 697
Bsp1286I	GDGCHC	5 cut(s)	10, 114, 168, 439, 631
Bsp143I	GATC	3 cut(s)	21, 130, 360
BspACI	CCGC	4 cut(s)	56, 98, 364, 660
BspANI	GGCC	4 cut(s)	19, 71, 80, 697
BspCNI	CTCAG	2 cut(s)	148, 633
BspFNI	CGCG	1 cut(s)	660
BspLI	GGNNCC	3 cut(s)	9, 429, 617
BspPI	GGATC	2 cut(s)	16, 355
BspT107I	GGYRCC	1 cut(s)	427
BsrI	ACTGG	2 cut(s)	538, 606
BssECI	CCNNGG	3 cut(s)	240, 495, 678
BssMI	GATC	3 cut(s)	21, 130, 360
BssNI	GRCGYC	2 cut(s)	49, 467
BssT1I	CCWWGG	1 cut(s)	678
Bst2UI	CCWGG	3 cut(s)	242, 496, 644
Bst4CI	ACNGT	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	8
BstACI	GRCGYC	2 cut(s)	49, 467
BstC8I	GCNNGC	1 cut(s)	53
BstDEI	CTNAG	2 cut(s)	156, 620
BstF5I	GGATG	1 cut(s)	457
BstFNI	CGCG	1 cut(s)	660
BstKTI	GATC	3 cut(s)	24, 133, 363
BstMAI	GTCTC	2 cut(s)	474, 803
BstMBI	GATC	3 cut(s)	21, 130, 360
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 158, 443, 541, 550
BstNI	CCWGG	3 cut(s)	242, 496, 644
BstSCI	CCNGG	3 cut(s)	240, 494, 642
BstSLI	GKGCMC	2 cut(s)	168, 631
BstUI	CGCG	1 cut(s)	660
BstV1I	GCAGC	2 cut(s)	164, 796
BstV2I	GAAGAC	1 cut(s)	218
BsuRI	GGCC	4 cut(s)	19, 71, 80, 697
BtsCI	GGATG	1 cut(s)	457
BtsIMutI	CAGTG	1 cut(s)	599
Cac8I	GCNNGC	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	184
CseI	GACGC	1 cut(s)	57
Csp6I	GTAC	2 cut(s)	428, 530
CviAII	CATG	6 cut(s)	39, 94, 181, 388, 432, 550
CviQI	GTAC	2 cut(s)	428, 530
DdeI	CTNAG	2 cut(s)	156, 620
DpnI	GATC	3 cut(s)	23, 132, 362
DpnII	GATC	3 cut(s)	21, 130, 360
DraIII	CACNNNGTG	1 cut(s)	605
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
Eco130I	CCWWGG	1 cut(s)	678
Eco147I	AGGCCT	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	184
EcoRII	CCWGG	3 cut(s)	240, 494, 642
EcoT14I	CCWWGG	1 cut(s)	678
EcoT38I	GRGCYC	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	678
Esp3I	CGTCTC	2 cut(s)	474, 803
FaeI	CATG	6 cut(s)	42, 97, 184, 391, 435, 553
FatI	CATG	6 cut(s)	38, 93, 180, 387, 431, 549
Fnu4HI	GCNGC	4 cut(s)	56, 99, 153, 785
FokI	GGATG	1 cut(s)	444
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	4 cut(s)	56, 99, 153, 785
FspBI	CTAG	2 cut(s)	381, 788
GluI	GCNGC	4 cut(s)	56, 99, 153, 785
GsaI	CCCAGC	1 cut(s)	225
GsuI	CTGGAG	1 cut(s)	626
HaeIII	GGCC	4 cut(s)	19, 71, 80, 697
HgaI	GACGC	1 cut(s)	57
Hin1I	GRCGYC	2 cut(s)	49, 467
Hin1II	CATG	6 cut(s)	42, 97, 184, 391, 435, 553
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HinfI	GANTC	1 cut(s)	177
HpaI	GTTAAC	1 cut(s)	249
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	3 cut(s)	127, 166, 249
Hpy188I	TCNGA	4 cut(s)	12, 116, 718, 729
Hpy188III	TCNNGA	5 cut(s)	128, 134, 202, 515, 807
Hpy8I	GTNNAC	3 cut(s)	127, 166, 249
Hpy99I	CGWCG	3 cut(s)	51, 86, 469
HpyAV	CCTTC	4 cut(s)	61, 199, 708, 813
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	467
HpyCH4V	TGCA	6 cut(s)	152, 166, 282, 410, 553, 599
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 158, 443, 541, 550
HpyF3I	CTNAG	2 cut(s)	156, 620
HpySE526I	ACGT	1 cut(s)	467
Hsp92I	GRCGYC	2 cut(s)	49, 467
Hsp92II	CATG	6 cut(s)	42, 97, 184, 391, 435, 553
KpnI	GGTACC	1 cut(s)	431
KspAI	GTTAAC	1 cut(s)	249
Kzo9I	GATC	3 cut(s)	21, 130, 360
LmnI	GCTCC	2 cut(s)	13, 117
Lsp1109I	GCAGC	2 cut(s)	164, 796
MaeI	CTAG	2 cut(s)	381, 788
MaeII	ACGT	1 cut(s)	467
MaeIII	GTNAC	4 cut(s)	85, 334, 383, 752
MalI	GATC	3 cut(s)	23, 132, 362
MboI	GATC	3 cut(s)	21, 130, 360
MboII	GAAGA	2 cut(s)	25, 223
MfeI	CAATTG	1 cut(s)	171
MhlI	GDGCHC	5 cut(s)	10, 114, 168, 439, 631
MluCI	AATT	3 cut(s)	171, 403, 720
MnlI	CCTC	8 cut(s)	9, 151, 152, 353, 385, 629, 773, 803
MroXI	GAANNNNTTC	1 cut(s)	723
MseI	TTAA	2 cut(s)	248, 374
MspA1I	CMGCKG	1 cut(s)	155
MspR9I	CCNGG	3 cut(s)	242, 496, 644
MunI	CAATTG	1 cut(s)	171
MvaI	CCWGG	3 cut(s)	242, 496, 644
MvnI	CGCG	1 cut(s)	660
MwoI	GCNNNNNNNGC	5 cut(s)	77, 158, 443, 541, 550
NdeII	GATC	3 cut(s)	21, 130, 360
NlaIII	CATG	6 cut(s)	42, 97, 184, 391, 435, 553
NlaIV	GGNNCC	3 cut(s)	9, 429, 617
NmuCI	GTSAC	1 cut(s)	334
PceI	AGGCCT	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	1 cut(s)	335
PdmI	GAANNNNTTC	1 cut(s)	723
PfeI	GAWTC	1 cut(s)	177
PkrI	GCNGC	4 cut(s)	57, 100, 154, 786
Psp6I	CCWGG	3 cut(s)	240, 494, 642
PspFI	CCCAGC	1 cut(s)	221
PspGI	CCWGG	3 cut(s)	240, 494, 642
PspN4I	GGNNCC	3 cut(s)	9, 429, 617
PspPI	GGNCC	1 cut(s)	184
PvuII	CAGCTG	1 cut(s)	155
RsaI	GTAC	2 cut(s)	429, 531
RsaNI	GTAC	2 cut(s)	428, 530
SaqAI	TTAA	2 cut(s)	248, 374
SatI	GCNGC	4 cut(s)	56, 99, 153, 785
Sau3AI	GATC	3 cut(s)	21, 130, 360
Sau96I	GGNCC	1 cut(s)	184
ScrFI	CCNGG	3 cut(s)	242, 496, 644
SduI	GDGCHC	5 cut(s)	10, 114, 168, 439, 631
SfiI	GGCCNNNNNGGCC	1 cut(s)	77
SinI	GGWCC	1 cut(s)	184
Sse9I	AATT	3 cut(s)	171, 403, 720
SseBI	AGGCCT	1 cut(s)	71
SsiI	CCGC	4 cut(s)	56, 98, 364, 660
SspMI	CTAG	2 cut(s)	381, 788
StuI	AGGCCT	1 cut(s)	71
StyD4I	CCNGG	3 cut(s)	240, 494, 642
StyI	CCWWGG	1 cut(s)	678
TaaI	ACNGT	1 cut(s)	31
TaiI	ACGT	1 cut(s)	470
TaqI	TCGA	3 cut(s)	35, 46, 464
TasI	AATT	3 cut(s)	171, 403, 720
TatI	WGTACW	1 cut(s)	529
TauI	GCSGC	2 cut(s)	58, 101
TfiI	GAWTC	1 cut(s)	177
Tru1I	TTAA	2 cut(s)	248, 374
Tru9I	TTAA	2 cut(s)	248, 374
TscAI	CASTG	1 cut(s)	606
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	2 cut(s)	152, 784
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	3 cut(s)	442, 446, 724
TspGWI	ACGGA	1 cut(s)	785
TspRI	CASTG	1 cut(s)	606
VneI	GTGCAC	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	184
XmnI	GAANNNNTTC	1 cut(s)	723
XspI	CTAG	2 cut(s)	381, 788
ZraI	GACGTC	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.