Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009932

Physical Location & Seq

Genomic Coordinates Reverse (-)

9171872 .. 9173490

Gene Structure 1619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G21430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGATTATCATCTTAGGGTTTTGTTCTCTGTTTCTCTTATCTTTGTGTTCGTCTCTGTTTCGGTTTGTGGAGACGAAGATGTGTTGATCAGGCAAGTGGTTGATGAAACAGAGCCGAAAGTTTTGTCATCGGAGGATCACTTTACTCTCTTCAAGAAGAAATTCGGCAAGGTTTACGGTTCCATTGAGGAGCATTATTACAGATTCTCTGTTTTCAAAGCAAATCTCCTGCGAGCGATGCGTCACCAGAAGATGGATCCTTCTGCTCGTCACGGCGTAACGCAGTTTTCGGATCTGACTCGTTCTGAGTTTCGGAGAAAGCATTTAGGGGTTAAAGGTGGGTTTAAGCTTCCTAAAGACGCTAATCAAGCCCCGATTCTCCCTACTCAGAATCTTCCGGAGGAGTTTGATTGGAGAGATCGCGGCGCGGTTACTCCCGTGAAAAACCAGGGATCTTGTGGTTCTTGCTGGAGTTTTAGCACTACAGGTGCCCTTGAAGGTGCTCACTTCCTCGCTACTGGCAAACTCGTTAGTCTCAGTGAACAACAGCTCGTCGATTGTGATCACGAGTGTGATCCAGAAGAGGAAGGTTCATGTGATTCTGGTTGTAACGGTGGGCTTATGAACAGTGCCTTTGAATACACGCTTAAAACCGGAGGGCTTATGCGAGAGAAAGATTATCCTTACACCGGTACTGATGGAGGGAGCTGCAAGTTAGACAGGTCTAAGATCGTTGCCTCTGTCTCCAACTTTAGTGTTGTGTCCATCAACGAAGATCAAATAGCTGCAAACCTTATCAAAAACGGTCCTCTAGCTGTGGCGATCAATGCAGCTTATATGCAAACCTACATTGGAGGAGTCTCGTGTCCTTACATATGCTCGAGGCGGCTCAACCACGGTGTGTTGTTGGTAGGTTATGGCTCGGCTGGGTTTTCTCAAGCAAGGTTAAAGGAAAAACCGTATTGGATCATCAAGAACTCGTGGGGTGAGTCTTGGGGTGAGAATGGTTTCTATAAGATATGTAAAGGTCGTAACATTTGCGGTGTTGACAGTTTGGTCTCCACCGTCGCTGCTACCACTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0070011 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04142 ko04210 map04142 map04210

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

361

Amino Acids

39.82

Weight (kDa)

7.08

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	48 - 104	4.3e-14	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	132 - 355	1.6e-75	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21430 AT4G39090
fragaria_vesca	FvH4_2g09940
malus_domestica	MD05G1058800.v1.1 MD10G1066900.v1.1
prunus_persica	Prupe.8G088700_v2.0.a1 Prupe.8G088700_v2.0.a1
pyrus_communis	pycom05g05010 pycom10g05230
rosa_chinensis	RchiOBHm_Chr6g0266691
rosa_laevigata	RLG00000007587 RLG00000014084
rosa_multiflora	Rmu_co8429615.1_g000001 Rmu_sc0006413.1_g000010 Rmu_sc0012140.1_g000025
rosa_roxburghii	Rroxscaffold_7G00201540
rosa_rugosa	Rorug06G0027100
rosa_samantha	Rh6BG148000 Rh6DG132600
rosa_wichuraiana	Rw6G012670 Rw6G012820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1055
AccB1I	GGYRCC	1 cut(s)	488
AccB7I	CCANNNNNTGG	1 cut(s)	253
AccII	CGCG	2 cut(s)	423, 428
AccIII	TCCGGA	1 cut(s)	397
AciI	CCGC	4 cut(s)	423, 428, 886, 1041
AclWI	GGATC	7 cut(s)	144, 251, 264, 300, 460, 569, 974
AcsI	RAATTY	1 cut(s)	161
AdeI	CACNNNGTG	1 cut(s)	901
AfaI	GTAC	1 cut(s)	694
AfiI	CCNNNNNNNGG	2 cut(s)	253, 689
AgeI	ACCGGT	1 cut(s)	689
AgsI	TTSAA	4 cut(s)	154, 217, 497, 638
AjnI	CCWGG	1 cut(s)	447
AleI	CACNNNNGTG	1 cut(s)	570
AluBI	AGCT	6 cut(s)	349, 550, 708, 785, 815, 833
AluI	AGCT	6 cut(s)	349, 550, 708, 785, 815, 833
Alw21I	GWGCWC	1 cut(s)	505
Alw26I	GTCTC	6 cut(s)	58, 66, 539, 748, 865, 1063
AlwI	GGATC	7 cut(s)	144, 251, 264, 300, 460, 569, 974
Ama87I	CYCGRG	1 cut(s)	880
Aor13HI	TCCGGA	1 cut(s)	397
ApeKI	GCWGC	4 cut(s)	708, 785, 830, 1070
ApoI	RAATTY	1 cut(s)	161
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
AsiGI	ACCGGT	1 cut(s)	689
Asp700I	GAANNNNTTC	2 cut(s)	161, 1007
AspLEI	GCGC	1 cut(s)	428
AspS9I	GGNCC	1 cut(s)	806
AsuHPI	GGTGA	3 cut(s)	236, 998, 1010
AvaI	CYCGRG	1 cut(s)	880
AvaII	GGWCC	1 cut(s)	806
BaeGI	GKGCMC	1 cut(s)	493
BamHI	GGATCC	1 cut(s)	256
BanI	GGYRCC	1 cut(s)	488
BauI	CACGAG	3 cut(s)	566, 862, 979
Bbv12I	GWGCWC	1 cut(s)	505
BbvI	GCAGC	4 cut(s)	695, 772, 842, 1057
BccI	CCATC	3 cut(s)	247, 692, 773
BceAI	ACGGC	1 cut(s)	289
BciT130I	CCWGG	1 cut(s)	449
BclI	TGATCA	2 cut(s)	87, 562
BcoDI	GTCTC	6 cut(s)	58, 66, 539, 748, 865, 1063
BfaI	CTAG	1 cut(s)	812
BfmI	CTRYAG	1 cut(s)	483
BisI	GCNGC	6 cut(s)	424, 709, 786, 831, 887, 1071
BlsI	GCNGC	6 cut(s)	425, 710, 787, 832, 888, 1072
Bme1390I	CCNGG	1 cut(s)	449
Bme18I	GGWCC	1 cut(s)	806
BmeT110I	CYCGRG	1 cut(s)	880
BmgT120I	GGNCC	1 cut(s)	806
BmiI	GGNNCC	3 cut(s)	181, 258, 490
BmrFI	CCNGG	1 cut(s)	449
BmsI	GCATC	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	490
BpuEI	CTTGAG	1 cut(s)	921
BsaBI	GATNNNNATC	2 cut(s)	9, 561
BsaI	GGTCTC	1 cut(s)	1063
BsaJI	CCNNGG	2 cut(s)	448, 895
BsaWI	WCCGGW	3 cut(s)	397, 653, 689
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 689
Bse118I	RCCGGY	1 cut(s)	689
Bse1I	ACTGG	1 cut(s)	523
Bse8I	GATNNNNATC	2 cut(s)	9, 561
BseAI	TCCGGA	1 cut(s)	397
BseBI	CCWGG	1 cut(s)	449
BseDI	CCNNGG	2 cut(s)	448, 895
BseJI	GATNNNNATC	2 cut(s)	9, 561
BseLI	CCNNNNNNNGG	2 cut(s)	253, 689
BseMII	CTCAG	3 cut(s)	297, 401, 550
BseNI	ACTGG	1 cut(s)	523
BseRI	GAGGAG	3 cut(s)	203, 416, 870
BseSI	GKGCMC	1 cut(s)	493
BseXI	GCAGC	4 cut(s)	695, 772, 842, 1057
BseYI	CCCAGC	1 cut(s)	926
Bsh1236I	CGCG	2 cut(s)	423, 428
BshNI	GGYRCC	1 cut(s)	488
BshTI	ACCGGT	1 cut(s)	689
BsiHKAI	GWGCWC	1 cut(s)	505
BsiHKCI	CYCGRG	1 cut(s)	880
BsiSI	CCGG	3 cut(s)	398, 654, 690
BslI	CCNNNNNNNGG	2 cut(s)	253, 689
BsmAI	GTCTC	6 cut(s)	58, 66, 539, 748, 865, 1063
BsmBI	CGTCTC	2 cut(s)	58, 66
Bso31I	GGTCTC	1 cut(s)	1063
BsoBI	CYCGRG	1 cut(s)	880
Bsp1286I	GDGCHC	2 cut(s)	493, 505
Bsp13I	TCCGGA	1 cut(s)	397
BspACI	CCGC	4 cut(s)	423, 428, 886, 1041
BspCNI	CTCAG	3 cut(s)	298, 400, 549
BspEI	TCCGGA	1 cut(s)	397
BspFNI	CGCG	2 cut(s)	423, 428
BspLI	GGNNCC	3 cut(s)	181, 258, 490
BspPI	GGATC	7 cut(s)	144, 251, 264, 300, 460, 569, 974
BspT107I	GGYRCC	1 cut(s)	488
BspTNI	GGTCTC	1 cut(s)	1063
BsrFI	RCCGGY	1 cut(s)	689
BsrI	ACTGG	1 cut(s)	523
BssAI	RCCGGY	1 cut(s)	689
BssECI	CCNNGG	2 cut(s)	448, 895
BssSI	CACGAG	3 cut(s)	566, 862, 979
Bst2BI	CACGAG	3 cut(s)	566, 862, 979
Bst2UI	CCWGG	1 cut(s)	449
Bst4CI	ACNGT	8 cut(s)	179, 614, 629, 806, 899, 960, 1052, 1066
Bst6I	CTCTTC	2 cut(s)	155, 576
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	5 cut(s)	14, 306, 387, 536, 726
BstDSI	CCRYGG	1 cut(s)	895
BstFNI	CGCG	2 cut(s)	423, 428
BstHHI	GCGC	1 cut(s)	428
BstMAI	GTCTC	6 cut(s)	58, 66, 539, 748, 865, 1063
BstMWI	GCNNNNNNNGC	3 cut(s)	238, 368, 827
BstNI	CCWGG	1 cut(s)	449
BstSCI	CCNGG	1 cut(s)	447
BstSFI	CTRYAG	1 cut(s)	483
BstSLI	GKGCMC	1 cut(s)	493
BstUI	CGCG	2 cut(s)	423, 428
BstV1I	GCAGC	4 cut(s)	695, 772, 842, 1057
BstX2I	RGATCY	3 cut(s)	256, 292, 452
BstYI	RGATCY	3 cut(s)	256, 292, 452
BtgI	CCRYGG	1 cut(s)	895
BtgZI	GCGATG	1 cut(s)	251
BtsIMutI	CAGTG	2 cut(s)	544, 634
Cac8I	GCNNGC	1 cut(s)	234
CfoI	GCGC	1 cut(s)	428
Cfr10I	RCCGGY	1 cut(s)	689
Cfr13I	GGNCC	1 cut(s)	806
CseI	GACGC	2 cut(s)	230, 368
Csp6I	GTAC	1 cut(s)	693
CspAI	ACCGGT	1 cut(s)	689
CviAII	CATG	1 cut(s)	594
CviQI	GTAC	1 cut(s)	693
DdeI	CTNAG	5 cut(s)	14, 306, 387, 536, 726
DraIII	CACNNNGTG	1 cut(s)	901
DrdI	GACNNNNNNGTC	1 cut(s)	1055
DseDI	GACNNNNNNGTC	1 cut(s)	1055
Eam1104I	CTCTTC	2 cut(s)	155, 576
EarI	CTCTTC	2 cut(s)	155, 576
Eco31I	GGTCTC	1 cut(s)	1063
Eco47I	GGWCC	1 cut(s)	806
Eco88I	CYCGRG	1 cut(s)	880
EcoRII	CCWGG	1 cut(s)	447
Esp3I	CGTCTC	2 cut(s)	58, 66
FaeI	CATG	1 cut(s)	597
FatI	CATG	1 cut(s)	593
FauNDI	CATATG	1 cut(s)	875
FbaI	TGATCA	2 cut(s)	87, 562
Fnu4HI	GCNGC	6 cut(s)	424, 709, 786, 831, 887, 1071
Fsp4HI	GCNGC	6 cut(s)	424, 709, 786, 831, 887, 1071
FspBI	CTAG	1 cut(s)	812
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	6 cut(s)	424, 709, 786, 831, 887, 1071
GsaI	CCCAGC	1 cut(s)	930
GsuI	CTGGAG	1 cut(s)	490
HapII	CCGG	3 cut(s)	398, 654, 690
HgaI	GACGC	2 cut(s)	230, 368
HhaI	GCGC	1 cut(s)	428
Hin1II	CATG	1 cut(s)	597
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HincII	GTYRAC	1 cut(s)	1048
HindII	GTYRAC	1 cut(s)	1048
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	7 cut(s)	204, 298, 376, 391, 599, 858, 989
HpaII	CCGG	3 cut(s)	398, 654, 690
HphI	GGTGA	3 cut(s)	236, 998, 1010
Hpy166II	GTNNAC	3 cut(s)	175, 542, 1048
Hpy188I	TCNGA	6 cut(s)	133, 292, 297, 307, 315, 390
Hpy188III	TCNNGA	6 cut(s)	154, 398, 566, 578, 973, 1083
Hpy8I	GTNNAC	3 cut(s)	175, 542, 1048
Hpy99I	CGWCG	2 cut(s)	557, 1070
HpyAV	CCTTC	3 cut(s)	270, 491, 581
HpyCH4III	ACNGT	8 cut(s)	179, 614, 629, 806, 899, 960, 1052, 1066
HpyCH4V	TGCA	4 cut(s)	711, 788, 830, 841
HpyF10VI	GCNNNNNNNGC	3 cut(s)	238, 368, 827
HpyF3I	CTNAG	5 cut(s)	14, 306, 387, 536, 726
Hsp92II	CATG	1 cut(s)	597
HspAI	GCGC	1 cut(s)	426
Kpn2I	TCCGGA	1 cut(s)	397
Ksp22I	TGATCA	2 cut(s)	87, 562
LmnI	GCTCC	2 cut(s)	190, 705
Lsp1109I	GCAGC	4 cut(s)	695, 772, 842, 1057
LweI	GCATC	1 cut(s)	228
MaeI	CTAG	1 cut(s)	812
MaeIII	GTNAC	6 cut(s)	242, 269, 277, 430, 608, 1031
MboII	GAAGA	7 cut(s)	89, 142, 169, 262, 386, 593, 785
MflI	RGATCY	3 cut(s)	256, 292, 452
MhlI	GDGCHC	2 cut(s)	493, 505
MluCI	AATT	1 cut(s)	161
MlyI	GAGTC	3 cut(s)	292, 867, 998
MmeI	TCCRAC	1 cut(s)	771
MroI	TCCGGA	1 cut(s)	397
MroXI	GAANNNNTTC	2 cut(s)	161, 1007
MseI	TTAA	4 cut(s)	333, 345, 648, 947
MslI	CAYNNNNRTG	1 cut(s)	570
MspI	CCGG	3 cut(s)	398, 654, 690
MspR9I	CCNGG	1 cut(s)	449
MvaI	CCWGG	1 cut(s)	449
MvnI	CGCG	2 cut(s)	423, 428
MwoI	GCNNNNNNNGC	3 cut(s)	238, 368, 827
NdeI	CATATG	1 cut(s)	875
NlaIII	CATG	1 cut(s)	597
NlaIV	GGNNCC	3 cut(s)	181, 258, 490
NmeAIII	GCCGAG	1 cut(s)	902
NmuCI	GTSAC	2 cut(s)	242, 269
OliI	CACNNNNGTG	1 cut(s)	570
PaeR7I	CTCGAG	1 cut(s)	880
PdmI	GAANNNNTTC	2 cut(s)	161, 1007
PfeI	GAWTC	4 cut(s)	204, 376, 391, 599
PflMI	CCANNNNNTGG	1 cut(s)	253
PinAI	ACCGGT	1 cut(s)	689
PkrI	GCNGC	6 cut(s)	425, 710, 787, 832, 888, 1072
PleI	GAGTC	3 cut(s)	292, 866, 997
PpsI	GAGTC	3 cut(s)	292, 866, 997
Psp6I	CCWGG	1 cut(s)	447
PspFI	CCCAGC	1 cut(s)	926
PspGI	CCWGG	1 cut(s)	447
PspN4I	GGNNCC	3 cut(s)	181, 258, 490
PspPI	GGNCC	1 cut(s)	806
PspXI	VCTCGAGB	1 cut(s)	880
PsuI	RGATCY	3 cut(s)	256, 292, 452
RsaI	GTAC	1 cut(s)	694
RsaNI	GTAC	1 cut(s)	693
RseI	CAYNNNNRTG	1 cut(s)	570
SaqAI	TTAA	4 cut(s)	333, 345, 648, 947
SatI	GCNGC	6 cut(s)	424, 709, 786, 831, 887, 1071
Sau96I	GGNCC	1 cut(s)	806
SchI	GAGTC	3 cut(s)	292, 867, 998
ScrFI	CCNGG	1 cut(s)	449
SduI	GDGCHC	2 cut(s)	493, 505
SfaNI	GCATC	1 cut(s)	228
SfcI	CTRYAG	1 cut(s)	483
Sfr274I	CTCGAG	1 cut(s)	880
SinI	GGWCC	1 cut(s)	806
SlaI	CTCGAG	1 cut(s)	880
SmiMI	CAYNNNNRTG	1 cut(s)	570
SmlI	CTYRAG	2 cut(s)	880, 936
SmoI	CTYRAG	2 cut(s)	880, 936
Sse9I	AATT	1 cut(s)	161
SsiI	CCGC	4 cut(s)	423, 428, 886, 1041
SspMI	CTAG	1 cut(s)	812
StyD4I	CCNGG	1 cut(s)	447
TaaI	ACNGT	8 cut(s)	179, 614, 629, 806, 899, 960, 1052, 1066
TaqI	TCGA	2 cut(s)	555, 881
TasI	AATT	1 cut(s)	161
TauI	GCSGC	2 cut(s)	426, 889
TfiI	GAWTC	4 cut(s)	204, 376, 391, 599
Tru1I	TTAA	4 cut(s)	333, 345, 648, 947
Tru9I	TTAA	4 cut(s)	333, 345, 648, 947
TscAI	CASTG	2 cut(s)	544, 634
TseFI	GTSAC	2 cut(s)	242, 269
TseI	GCWGC	4 cut(s)	708, 785, 830, 1070
Tsp45I	GTSAC	2 cut(s)	242, 269
TspDTI	ATGAA	3 cut(s)	120, 582, 638
TspRI	CASTG	2 cut(s)	544, 634
Van91I	CCANNNNNTGG	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	806
XapI	RAATTY	1 cut(s)	161
XcmI	CCANNNNNNNNNTGG	1 cut(s)	455
XhoI	CTCGAG	1 cut(s)	880
XmnI	GAANNNNTTC	2 cut(s)	161, 1007
XspI	CTAG	1 cut(s)	812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.