Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009932

Physical Location & Seq

Genomic Coordinates Forward (+)

8814414 .. 8817123

Gene Structure 2710 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g09940.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGCCTCGAACTCTCTCTCTCTTCCTCTTCTCCTCTCTCCTCTTCTTCCTCGCCCGCGCCGACGTGGATGTCTCCGATCCGTTGATCCGCCAAGTCGTCGACGGCGGAGATGAATCCCCCCACCACCACCACCACCACGATCACGACGGCGAAGCGATGCTGGGAGCGGAGCACCACTTCTCGCTGTTCAAGAGAAAATTCGGAAAGTCGTACGCGAGCCAGGAGGAGCACGACTACAGATTCTCGGTGTTCAAGACCAACATGAGGAGGGATTTTGACTGGAGAGAGCGTGGAGCTGTTACGGAAGTCAAAAACCAGGGCTCGTGCGGGTCGTGCTGGAGTTTCAGTACCACTGGAGCGTTGGAAGGTGCACACTTCCTTGCGACTGGGGAGCTTGTCAGCCTCAGCGAGCAGCAGCTTGTTGACTGCGATCACGAGTGTGATCCAGAGGAGGCAGGTTCATGCGACTCTGGCTGCAACGGTGGGCTCATGAACAGTGCCTTTGAGTACACACTTAAAGCTGGTGGACTCATGAAGGAAAAAGATTATCCATACACTGGTACTGATCGTGGGACCTGCAAGTTTGACAAGACCAAAATTGCAGCCAAAGTTTCCAACTTCAGTGTTGTCTCCCTTGATGAAGATCAAATTGCTGCCAATCTTGTGAAGAACGGCCCTCTTGCAGTGGCTATCAATGCTGTGTTCATGCAAACATATGTTGGTGGAGTCTCATGCCCCTACATTTGCTCAAAGAGGTTGGACCATGGTGTGTTGTTAGTTGGTTATGGTTCTGCCGGCTACTCTCCCGTCAGAATGAAGGAGAAGCCATACTGGATCATAAAAAACTCATGGGGTGAGAACTGGGGAGAGAAGGGATTCTACAAAATCTGCAGGGGCCGTAATATCTGTGGTGTGGACTCCATGGTTTCAACTGTTGCTGCAGTTGAGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0070011 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04142 ko04210 map04142 map04210

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

318

Amino Acids

35.06

Weight (kDa)

5.9

Isoelectric Point (pI)

24.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	60 - 116	1.5e-16	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	143 - 366	4.9e-76	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21430 AT4G39090
fragaria_vesca	FvH4_2g09940
malus_domestica	MD05G1058800.v1.1 MD10G1066900.v1.1
prunus_persica	Prupe.8G088700_v2.0.a1 Prupe.8G088700_v2.0.a1
pyrus_communis	pycom05g05010 pycom10g05230
rosa_chinensis	RchiOBHm_Chr6g0266691
rosa_laevigata	RLG00000007587 RLG00000014084
rosa_multiflora	Rmu_co8429615.1_g000001 Rmu_sc0006413.1_g000010 Rmu_sc0012140.1_g000025
rosa_roxburghii	Rroxscaffold_7G00201540
rosa_rugosa	Rorug06G0027100
rosa_samantha	Rh6BG148000 Rh6DG132600
rosa_wichuraiana	Rw6G012670 Rw6G012820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
Acc36I	ACCTGC	2 cut(s)	446, 584
AccB7I	CCANNNNNTGG	1 cut(s)	557
AccBSI	CCGCTC	1 cut(s)	167
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	2 cut(s)	57, 215
AciI	CCGC	5 cut(s)	55, 88, 105, 167, 327
AclWI	GGATC	4 cut(s)	71, 79, 437, 842
AcsI	RAATTY	1 cut(s)	197
AcuI	CTGAAG	1 cut(s)	604
AfaI	GTAC	4 cut(s)	212, 349, 509, 562
AfiI	CCNNNNNNNGG	2 cut(s)	264, 557
AgsI	TTSAA	3 cut(s)	190, 253, 930
AjiI	CACGTC	1 cut(s)	64
AjnI	CCWGG	2 cut(s)	219, 315
AleI	CACNNNNGTG	1 cut(s)	438
AluBI	AGCT	5 cut(s)	296, 394, 418, 521, 949
AluI	AGCT	5 cut(s)	296, 394, 418, 521, 949
Alw21I	GWGCWC	3 cut(s)	174, 231, 373
Alw26I	GTCTC	3 cut(s)	76, 634, 733
Alw44I	GTGCAC	1 cut(s)	369
AlwI	GGATC	4 cut(s)	71, 79, 437, 842
AoxI	GGCC	2 cut(s)	673, 895
ApaLI	GTGCAC	1 cut(s)	369
ApeKI	GCWGC	6 cut(s)	412, 415, 474, 602, 653, 938
ApoI	RAATTY	1 cut(s)	197
Asp700I	GAANNNNTTC	1 cut(s)	875
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	4 cut(s)	573, 674, 760, 895
AsuHPI	GGTGA	1 cut(s)	866
AvaII	GGWCC	2 cut(s)	573, 760
BaeGI	GKGCMC	1 cut(s)	373
BanII	GRGCYC	2 cut(s)	323, 489
BarI	GAAGNNNNNNTAC	2 cut(s)	863, 895
BauI	CACGAG	2 cut(s)	322, 434
Bbv12I	GWGCWC	3 cut(s)	174, 231, 373
BbvCI	CCTCAGC	1 cut(s)	404
BbvI	GCAGC	6 cut(s)	424, 427, 461, 614, 640, 925
BceAI	ACGGC	4 cut(s)	118, 163, 688, 882
BciT130I	CCWGG	2 cut(s)	221, 317
BcoDI	GTCTC	3 cut(s)	76, 634, 733
BfmI	CTRYAG	4 cut(s)	235, 889, 939, 950
BfuAI	ACCTGC	2 cut(s)	446, 584
BisI	GCNGC	6 cut(s)	413, 416, 475, 603, 654, 939
BlsI	GCNGC	6 cut(s)	414, 417, 476, 604, 655, 940
Bme1390I	CCNGG	2 cut(s)	221, 317
Bme18I	GGWCC	2 cut(s)	573, 760
BmgBI	CACGTC	1 cut(s)	64
BmgT120I	GGNCC	4 cut(s)	573, 674, 760, 895
BmiI	GGNNCC	2 cut(s)	574, 896
BmrFI	CCNGG	2 cut(s)	221, 317
BmrI	ACTGGG	2 cut(s)	396, 871
BmsI	GCATC	1 cut(s)	147
BmuI	ACTGGG	2 cut(s)	396, 871
BpmI	CTGGAG	3 cut(s)	301, 358, 375
Bpu10I	CCTNAGC	1 cut(s)	404
BsaBI	GATNNNNATC	1 cut(s)	642
BsaJI	CCNNGG	3 cut(s)	316, 763, 921
BsaXI	ACNNNNNCTCC	4 cut(s)	274, 304, 331, 361
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 557
Bse118I	RCCGGY	1 cut(s)	794
Bse1I	ACTGG	6 cut(s)	284, 358, 391, 562, 836, 866
Bse8I	GATNNNNATC	1 cut(s)	642
BseBI	CCWGG	2 cut(s)	221, 317
BseDI	CCNNGG	3 cut(s)	316, 763, 921
BseGI	GGATG	1 cut(s)	73
BseJI	GATNNNNATC	1 cut(s)	642
BseLI	CCNNNNNNNGG	2 cut(s)	264, 557
BseMII	CTCAG	1 cut(s)	418
BseNI	ACTGG	6 cut(s)	284, 358, 391, 562, 836, 866
BseRI	GAGGAG	5 cut(s)	22, 29, 239, 280, 464
BseSI	GKGCMC	1 cut(s)	373
BseXI	GCAGC	6 cut(s)	424, 427, 461, 614, 640, 925
BseYI	CCCAGC	1 cut(s)	160
Bsh1236I	CGCG	2 cut(s)	57, 215
BshFI	GGCC	2 cut(s)	675, 897
BsiHKAI	GWGCWC	3 cut(s)	174, 231, 373
BsiSI	CCGG	1 cut(s)	795
BsiWI	CGTACG	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	586
BslI	CCNNNNNNNGG	2 cut(s)	264, 557
BsmAI	GTCTC	3 cut(s)	76, 634, 733
BsmFI	GGGAC	1 cut(s)	586
BsnI	GGCC	2 cut(s)	675, 897
Bsp1286I	GDGCHC	5 cut(s)	174, 231, 323, 373, 489
Bsp143I	GATC	8 cut(s)	76, 84, 139, 430, 442, 565, 643, 834
Bsp19I	CCATGG	2 cut(s)	763, 921
BspACI	CCGC	5 cut(s)	55, 88, 105, 167, 327
BspANI	GGCC	2 cut(s)	675, 897
BspCNI	CTCAG	1 cut(s)	417
BspFNI	CGCG	2 cut(s)	57, 215
BspHI	TCATGA	2 cut(s)	489, 531
BspLI	GGNNCC	2 cut(s)	574, 896
BspMAI	CTGCAG	2 cut(s)	893, 943
BspMI	ACCTGC	2 cut(s)	446, 584
BspPI	GGATC	4 cut(s)	71, 79, 437, 842
BsrBI	CCGCTC	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	794
BsrI	ACTGG	6 cut(s)	284, 358, 391, 562, 836, 866
BssAI	RCCGGY	1 cut(s)	794
BssECI	CCNNGG	3 cut(s)	316, 763, 921
BssMI	GATC	8 cut(s)	76, 84, 139, 430, 442, 565, 643, 834
BssSI	CACGAG	2 cut(s)	322, 434
BssT1I	CCWWGG	2 cut(s)	763, 921
Bst2BI	CACGAG	2 cut(s)	322, 434
Bst2UI	CCWGG	2 cut(s)	221, 317
Bst4CI	ACNGT	3 cut(s)	482, 497, 934
Bst6I	CTCTTC	3 cut(s)	26, 32, 47
BstC8I	GCNNGC	4 cut(s)	55, 217, 410, 796
BstDEI	CTNAG	1 cut(s)	404
BstDSI	CCRYGG	2 cut(s)	763, 921
BstF5I	GGATG	1 cut(s)	73
BstFNI	CGCG	2 cut(s)	57, 215
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	8 cut(s)	79, 87, 142, 433, 445, 568, 646, 837
BstMAI	GTCTC	3 cut(s)	76, 634, 733
BstMBI	GATC	8 cut(s)	76, 84, 139, 430, 442, 565, 643, 834
BstMWI	GCNNNNNNNGC	3 cut(s)	333, 471, 695
BstNI	CCWGG	2 cut(s)	221, 317
BstSCI	CCNGG	2 cut(s)	219, 315
BstSFI	CTRYAG	4 cut(s)	235, 889, 939, 950
BstSLI	GKGCMC	1 cut(s)	373
BstUI	CGCG	2 cut(s)	57, 215
BstV1I	GCAGC	6 cut(s)	424, 427, 461, 614, 640, 925
BsuRI	GGCC	2 cut(s)	675, 897
BtgI	CCRYGG	2 cut(s)	763, 921
BtgZI	GCGATG	1 cut(s)	170
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	73
BtsI	GCAGTG	1 cut(s)	690
BtsIMutI	CAGTG	5 cut(s)	351, 502, 555, 628, 690
BveI	ACCTGC	2 cut(s)	446, 584
Cac8I	GCNNGC	4 cut(s)	55, 217, 410, 796
CciI	TCATGA	2 cut(s)	489, 531
CfoI	GCGC	1 cut(s)	59
Cfr10I	RCCGGY	1 cut(s)	794
Cfr13I	GGNCC	4 cut(s)	573, 674, 760, 895
Csp6I	GTAC	4 cut(s)	211, 348, 508, 561
CviAII	CATG	9 cut(s)	262, 462, 490, 532, 706, 732, 764, 849, 922
CviQI	GTAC	4 cut(s)	211, 348, 508, 561
DdeI	CTNAG	1 cut(s)	404
DpnI	GATC	8 cut(s)	78, 86, 141, 432, 444, 567, 645, 836
DpnII	GATC	8 cut(s)	76, 84, 139, 430, 442, 565, 643, 834
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
Eam1104I	CTCTTC	3 cut(s)	26, 32, 47
EarI	CTCTTC	3 cut(s)	26, 32, 47
EciI	GGCGGA	2 cut(s)	77, 120
Eco130I	CCWWGG	2 cut(s)	763, 921
Eco24I	GRGCYC	2 cut(s)	323, 489
Eco47I	GGWCC	2 cut(s)	573, 760
Eco57I	CTGAAG	1 cut(s)	604
EcoO109I	RGGNCCY	1 cut(s)	573
EcoRII	CCWGG	2 cut(s)	219, 315
EcoT14I	CCWWGG	2 cut(s)	763, 921
EcoT38I	GRGCYC	2 cut(s)	323, 489
ErhI	CCWWGG	2 cut(s)	763, 921
FaeI	CATG	9 cut(s)	265, 465, 493, 535, 709, 735, 767, 852, 925
FaqI	GGGAC	1 cut(s)	586
FatI	CATG	9 cut(s)	261, 461, 489, 531, 705, 731, 763, 848, 921
FauI	CCCGC	2 cut(s)	62, 320
FauNDI	CATATG	1 cut(s)	715
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	6 cut(s)	413, 416, 475, 603, 654, 939
FokI	GGATG	1 cut(s)	80
FriOI	GRGCYC	2 cut(s)	323, 489
Fsp4HI	GCNGC	6 cut(s)	413, 416, 475, 603, 654, 939
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	6 cut(s)	413, 416, 475, 603, 654, 939
GsaI	CCCAGC	1 cut(s)	164
GsuI	CTGGAG	3 cut(s)	301, 358, 375
HaeIII	GGCC	2 cut(s)	675, 897
HapII	CCGG	1 cut(s)	795
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	9 cut(s)	265, 465, 493, 535, 709, 735, 767, 852, 925
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HincII	GTYRAC	2 cut(s)	100, 424
HindII	GTYRAC	2 cut(s)	100, 424
HinfI	GANTC	7 cut(s)	113, 240, 467, 528, 726, 876, 917
HpaII	CCGG	1 cut(s)	795
HphI	GGTGA	1 cut(s)	866
Hpy166II	GTNNAC	6 cut(s)	100, 371, 424, 510, 527, 916
Hpy188I	TCNGA	3 cut(s)	76, 203, 812
Hpy188III	TCNNGA	7 cut(s)	143, 190, 253, 434, 446, 490, 532
Hpy8I	GTNNAC	6 cut(s)	100, 371, 424, 510, 527, 916
Hpy99I	CGWCG	4 cut(s)	65, 101, 104, 149
HpyAV	CCTTC	4 cut(s)	359, 529, 811, 865
HpyCH4III	ACNGT	3 cut(s)	482, 497, 934
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	8 cut(s)	371, 477, 579, 602, 683, 709, 891, 941
HpyF10VI	GCNNNNNNNGC	3 cut(s)	333, 471, 695
HpyF3I	CTNAG	1 cut(s)	404
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	9 cut(s)	265, 465, 493, 535, 709, 735, 767, 852, 925
HspAI	GCGC	1 cut(s)	57
KroI	GCCGGC	1 cut(s)	794
KroNI	GCCGGC	1 cut(s)	796
Kzo9I	GATC	8 cut(s)	76, 84, 139, 430, 442, 565, 643, 834
LmnI	GCTCC	6 cut(s)	164, 169, 226, 293, 356, 391
Lsp1109I	GCAGC	6 cut(s)	424, 427, 461, 614, 640, 925
LweI	GCATC	1 cut(s)	147
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	8 cut(s)	78, 86, 141, 432, 444, 567, 645, 836
MbiI	CCGCTC	1 cut(s)	167
MboI	GATC	8 cut(s)	76, 84, 139, 430, 442, 565, 643, 834
MboII	GAAGA	6 cut(s)	13, 19, 34, 37, 653, 679
MhlI	GDGCHC	5 cut(s)	174, 231, 323, 373, 489
MluCI	AATT	3 cut(s)	197, 597, 648
MlyI	GAGTC	4 cut(s)	461, 522, 735, 911
MmeI	TCCRAC	3 cut(s)	342, 639, 738
MroNI	GCCGGC	1 cut(s)	794
MroXI	GAANNNNTTC	1 cut(s)	875
MseI	TTAA	1 cut(s)	516
MslI	CAYNNNNRTG	1 cut(s)	438
MspI	CCGG	1 cut(s)	795
MspR9I	CCNGG	2 cut(s)	221, 317
MvaI	CCWGG	2 cut(s)	221, 317
MvnI	CGCG	2 cut(s)	57, 215
MwoI	GCNNNNNNNGC	3 cut(s)	333, 471, 695
NaeI	GCCGGC	1 cut(s)	796
NcoI	CCATGG	2 cut(s)	763, 921
NdeI	CATATG	1 cut(s)	715
NdeII	GATC	8 cut(s)	76, 84, 139, 430, 442, 565, 643, 834
NgoMIV	GCCGGC	1 cut(s)	794
NlaIII	CATG	9 cut(s)	265, 465, 493, 535, 709, 735, 767, 852, 925
NlaIV	GGNNCC	2 cut(s)	574, 896
OliI	CACNNNNGTG	1 cut(s)	438
PagI	TCATGA	2 cut(s)	489, 531
PcsI	WCGNNNNNNNCGW	2 cut(s)	57, 329
PdiI	GCCGGC	1 cut(s)	796
PdmI	GAANNNNTTC	1 cut(s)	875
PfeI	GAWTC	3 cut(s)	113, 240, 876
Pfl23II	CGTACG	1 cut(s)	210
PflMI	CCANNNNNTGG	1 cut(s)	557
PkrI	GCNGC	6 cut(s)	414, 417, 476, 604, 655, 940
PleI	GAGTC	4 cut(s)	461, 522, 734, 911
PpsI	GAGTC	4 cut(s)	461, 522, 734, 911
PpuMI	RGGWCCY	1 cut(s)	573
Psp5II	RGGWCCY	1 cut(s)	573
Psp6I	CCWGG	2 cut(s)	219, 315
PspFI	CCCAGC	1 cut(s)	160
PspGI	CCWGG	2 cut(s)	219, 315
PspLI	CGTACG	1 cut(s)	210
PspN4I	GGNNCC	2 cut(s)	574, 896
PspPI	GGNCC	4 cut(s)	573, 674, 760, 895
PspPPI	RGGWCCY	1 cut(s)	573
PstI	CTGCAG	2 cut(s)	893, 943
RsaI	GTAC	4 cut(s)	212, 349, 509, 562
RsaNI	GTAC	4 cut(s)	211, 348, 508, 561
RseI	CAYNNNNRTG	1 cut(s)	438
SalI	GTCGAC	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	516
SatI	GCNGC	6 cut(s)	413, 416, 475, 603, 654, 939
Sau3AI	GATC	8 cut(s)	76, 84, 139, 430, 442, 565, 643, 834
Sau96I	GGNCC	4 cut(s)	573, 674, 760, 895
SchI	GAGTC	4 cut(s)	461, 522, 735, 911
ScrFI	CCNGG	2 cut(s)	221, 317
SduI	GDGCHC	5 cut(s)	174, 231, 323, 373, 489
SfaNI	GCATC	1 cut(s)	147
SfcI	CTRYAG	4 cut(s)	235, 889, 939, 950
SgrDI	CGTCGACG	1 cut(s)	98
SinI	GGWCC	2 cut(s)	573, 760
SmiMI	CAYNNNNRTG	1 cut(s)	438
Sse9I	AATT	3 cut(s)	197, 597, 648
SsiI	CCGC	5 cut(s)	55, 88, 105, 167, 327
StyD4I	CCNGG	2 cut(s)	219, 315
StyI	CCWWGG	2 cut(s)	763, 921
TaaI	ACNGT	3 cut(s)	482, 497, 934
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	2 cut(s)	7, 99
TasI	AATT	3 cut(s)	197, 597, 648
TatI	WGTACW	1 cut(s)	507
TfiI	GAWTC	3 cut(s)	113, 240, 876
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TscAI	CASTG	5 cut(s)	358, 502, 562, 628, 690
TseI	GCWGC	6 cut(s)	412, 415, 474, 602, 653, 938
TspDTI	ATGAA	7 cut(s)	126, 450, 506, 548, 654, 694, 830
TspGWI	ACGGA	2 cut(s)	69, 317
TspRI	CASTG	5 cut(s)	358, 502, 562, 628, 690
Van91I	CCANNNNNTGG	1 cut(s)	557
VneI	GTGCAC	1 cut(s)	369
VpaK11BI	GGWCC	2 cut(s)	573, 760
XapI	RAATTY	1 cut(s)	197
XcmI	CCANNNNNNNNNTGG	1 cut(s)	358
XmiI	GTMKAC	1 cut(s)	99
XmnI	GAANNNNTTC	1 cut(s)	875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.