pycom05g05010

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
5911063 .. 5913399
2337 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g05010.3

Sequence Viewer

Length: 1110 bp
ATGGAACGCATTCTCTCTCTCCTCGTCACCTTCTCTCTCCTGATCGTCTCGCGTGCGCAATCGGACGGTGCGGATCCTCTGATCAGGCAAGTGGTGGACGGCGGCGATGAGTCCCACCACCACCACCACGACGCTCTCGGAGCCGAGCACCACTTCTCGCTCTTCAAGCACAAATACGGCAAATCGTACGCCAGCAAGGAGGAGCACGACTACAGGTTCGACGTGTTCAAGGCCAACCTCCGCCGTGCCGCGCGCCACCAGCGACTCGACCCGTCGGCTCAGCACGGCGTGACTCGGTTCTCCGATATGACACCCGCCGAGTTCCGGAAAAGTCAACTCGGTCTCAGAGGGTTGAAGCTGCCCGCCGACGCAACCGAGGCTCCGATTCTCCCGACAGAGAATCTGCCTGAGGATTTTGATTGGAGAGAGCATGGAGCTGTCACTTCCGTTAAAAATCAGGGTTCGTGCGGATCTTGCTGGAGTTTCAGTACTACAGGAGCGTTGGAAGGTGCACACTTTCTCGCAACTGGAGAGCTTGTGAGCCTCAGCGAGCAGCAGCTTGTCGATTGTGATCATGAGTGTGATCCAGAGGAGGCAGGTTCATGTGACTCCGGGTGCAATGGTGGACTCATGAACAGTGCCTTTGAGTACACACTCAAAGCTGGTGGACTAATGAAGGAAGAGGATTATCCATACACTGGTACTGATCGTGGAACCTGCAAATTTGACAAGAGCAAAATTGCAGCATCAGTTTCCAATTTCAGTGTCATCTCCCTTGATGAAGACCAAATTGCTGCAAACCTTGTCAAAAATGGCCCTCTTGCTGTGGCTATTAACGCGGTGTTCATGCAAACATATGTTGGTGGAGTGTCGTGCCCCTACATATGCTCAAGGCGGTTGGATCACGGAGTGTTACTCGTAGGTTATGGTGCAGCTGGGTATTCTCCCATCAGATTGAAGGAGAAGCCATACTGGATCATCAAGAACTCATGGGGAGAGAACTGGGGAGAGAGTGGATTCTACAAAATCTGCAGGGGCCGAAACATCTGTGGCGTGGACTCCATGGTCTCGACCGTTGCTGCAGCTTCGGTTAAGACCAACTCAGAGTAG

Protein Analysis

370

Amino Acids

40.36

Weight (kDa)

5.84

Isoelectric Point (pI)

30.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1064
Acc16I TGCGCA 1 cut(s) 57
Acc36I ACCTGC 2 cut(s) 587, 725
AccB7I CCANNNNNTGG 1 cut(s) 698
AccII CGCG 4 cut(s) 52, 251, 253, 839
AccIII TCCGGA 1 cut(s) 324
AciI CCGC 9 cut(s) 71, 102, 241, 249, 315, 363, 468, 839, 895
AclWI GGATC 6 cut(s) 68, 81, 478, 578, 909, 983
AcsI RAATTY 1 cut(s) 722
AdeI CACNNNGTG 2 cut(s) 289, 910
AfaI GTAC 4 cut(s) 188, 490, 650, 703
AfiI CCNNNNNNNGG 2 cut(s) 324, 698
AflIII ACRYGT 1 cut(s) 222
AgsI TTSAA 4 cut(s) 166, 229, 355, 958
AjiI CACGTC 1 cut(s) 223
AluBI AGCT 7 cut(s) 358, 437, 535, 559, 662, 935, 1085
AluI AGCT 7 cut(s) 358, 437, 535, 559, 662, 935, 1085
Alw21I GWGCWC 3 cut(s) 150, 207, 514
Alw26I GTCTC 3 cut(s) 52, 347, 1072
Alw44I GTGCAC 1 cut(s) 510
AlwI GGATC 6 cut(s) 68, 81, 478, 578, 909, 983
Aor13HI TCCGGA 1 cut(s) 324
AoxI GGCC 3 cut(s) 231, 814, 1036
ApaLI GTGCAC 1 cut(s) 510
ApeKI GCWGC 8 cut(s) 358, 553, 556, 743, 794, 932, 1079, 1082
ApoI RAATTY 1 cut(s) 722
ArsI GACNNNNNNTTYG 2 cut(s) 200, 232
Asp700I GAANNNNTTC 1 cut(s) 9
AspLEI GCGC 3 cut(s) 58, 253, 255
AspS9I GGNCC 2 cut(s) 815, 1036
AsuC2I CCSGG 1 cut(s) 613
AsuHPI GGTGA 1 cut(s) 19
AxyI CCTNAGG 1 cut(s) 408
BaeGI GKGCMC 2 cut(s) 514, 878
BamHI GGATCC 1 cut(s) 73
BbsI GAAGAC 1 cut(s) 789
Bbv12I GWGCWC 3 cut(s) 150, 207, 514
BbvCI CCTCAGC 1 cut(s) 545
BbvI GCAGC 8 cut(s) 345, 565, 568, 755, 781, 944, 1066, 1094
BccI CCATC 1 cut(s) 956
BceAI ACGGC 4 cut(s) 115, 193, 228, 301
BclI TGATCA 2 cut(s) 81, 571
BcnI CCSGG 1 cut(s) 613
BcoDI GTCTC 3 cut(s) 52, 347, 1072
BfmI CTRYAG 4 cut(s) 211, 492, 1030, 1080
BfuAI ACCTGC 2 cut(s) 587, 725
BlpI GCTNAGC 1 cut(s) 279
BmcAI AGTACT 1 cut(s) 490
Bme1390I CCNGG 1 cut(s) 613
BmgBI CACGTC 1 cut(s) 223
BmgT120I GGNCC 2 cut(s) 815, 1036
BmiI GGNNCC 5 cut(s) 75, 142, 381, 715, 1037
BmrFI CCNGG 1 cut(s) 613
BmrI ACTGGG 1 cut(s) 1012
BmsI GCATC 1 cut(s) 755
BmuI ACTGGG 1 cut(s) 1012
BpiI GAAGAC 1 cut(s) 789
BplI GAGNNNNNCTC 2 cut(s) 900, 932
BpmI CTGGAG 2 cut(s) 499, 549
Bpu10I CCTNAGC 1 cut(s) 545
Bpu1102I GCTNAGC 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 874
BpuMI CCSGG 1 cut(s) 613
BsaBI GATNNNNATC 1 cut(s) 570
BsaI GGTCTC 2 cut(s) 347, 1072
BsaJI CCNNGG 2 cut(s) 375, 1062
BsaWI WCCGGW 1 cut(s) 324
BsaXI ACNNNNNCTCC 6 cut(s) 364, 394, 472, 502, 522, 552
Bsc4I CCNNNNNNNGG 2 cut(s) 324, 698
Bse1I ACTGG 4 cut(s) 532, 703, 977, 1007
Bse21I CCTNAGG 1 cut(s) 408
Bse3DI GCAATG 1 cut(s) 625
Bse8I GATNNNNATC 1 cut(s) 570
BseAI TCCGGA 1 cut(s) 324
BseDI CCNNGG 2 cut(s) 375, 1062
BseJI GATNNNNATC 1 cut(s) 570
BseLI CCNNNNNNNGG 2 cut(s) 324, 698
BseMI GCAATG 1 cut(s) 625
BseMII CTCAG 4 cut(s) 293, 358, 399, 559
BseNI ACTGG 4 cut(s) 532, 703, 977, 1007
BsePI GCGCGC 1 cut(s) 251
BseRI GAGGAG 3 cut(s) 11, 215, 605
BseSI GKGCMC 2 cut(s) 514, 878
BseXI GCAGC 8 cut(s) 345, 565, 568, 755, 781, 944, 1066, 1094
BseYI CCCAGC 1 cut(s) 935
BsgI GTGCAG 1 cut(s) 951
Bsh1236I CGCG 4 cut(s) 52, 251, 253, 839
Bsh1285I CGRYCG 1 cut(s) 1074
BshFI GGCC 3 cut(s) 233, 816, 1038
BsiEI CGRYCG 1 cut(s) 1074
BsiHKAI GWGCWC 3 cut(s) 150, 207, 514
BsiSI CCGG 2 cut(s) 325, 612
BsiWI CGTACG 1 cut(s) 186
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 2 cut(s) 324, 698
BsmAI GTCTC 3 cut(s) 52, 347, 1072
BsmBI CGTCTC 1 cut(s) 52
BsmFI GGGAC 1 cut(s) 97
BsmI GAATGC 1 cut(s) 9
BsnI GGCC 3 cut(s) 233, 816, 1038
Bso31I GGTCTC 2 cut(s) 347, 1072
Bsp1286I GDGCHC 4 cut(s) 150, 207, 514, 878
Bsp13I TCCGGA 1 cut(s) 324
Bsp143I GATC 9 cut(s) 42, 73, 81, 470, 571, 583, 706, 901, 975
Bsp1720I GCTNAGC 1 cut(s) 279
Bsp19I CCATGG 1 cut(s) 1062
BspACI CCGC 9 cut(s) 71, 102, 241, 249, 315, 363, 468, 839, 895
BspANI GGCC 3 cut(s) 233, 816, 1038
BspCNI CTCAG 4 cut(s) 292, 357, 400, 558
BspEI TCCGGA 1 cut(s) 324
BspFNI CGCG 4 cut(s) 52, 251, 253, 839
BspHI TCATGA 2 cut(s) 574, 630
BspLI GGNNCC 5 cut(s) 75, 142, 381, 715, 1037
BspMAI CTGCAG 2 cut(s) 1034, 1084
BspMI ACCTGC 2 cut(s) 587, 725
BspPI GGATC 6 cut(s) 68, 81, 478, 578, 909, 983
BspQI GCTCTTC 1 cut(s) 167
BspTNI GGTCTC 2 cut(s) 347, 1072
BsrDI GCAATG 1 cut(s) 625
BsrI ACTGG 4 cut(s) 532, 703, 977, 1007
BssECI CCNNGG 2 cut(s) 375, 1062
BssHII GCGCGC 1 cut(s) 251
BssMI GATC 9 cut(s) 42, 73, 81, 470, 571, 583, 706, 901, 975
BssT1I CCWWGG 1 cut(s) 1062
Bst4CI ACNGT 3 cut(s) 68, 638, 1075
Bst6I CTCTTC 2 cut(s) 167, 675
BstC8I GCNNGC 5 cut(s) 54, 193, 253, 363, 551
BstDEI CTNAG 5 cut(s) 279, 344, 408, 545, 1102
BstDSI CCRYGG 1 cut(s) 1062
BstFNI CGCG 4 cut(s) 52, 251, 253, 839
BstHHI GCGC 3 cut(s) 58, 253, 255
BstKTI GATC 9 cut(s) 45, 76, 84, 473, 574, 586, 709, 904, 978
BstMAI GTCTC 3 cut(s) 52, 347, 1072
BstMBI GATC 9 cut(s) 42, 73, 81, 470, 571, 583, 706, 901, 975
BstMCI CGRYCG 1 cut(s) 1074
BstMWI GCNNNNNNNGC 6 cut(s) 140, 166, 259, 377, 474, 836
BstSCI CCNGG 1 cut(s) 611
BstSFI CTRYAG 4 cut(s) 211, 492, 1030, 1080
BstSLI GKGCMC 2 cut(s) 514, 878
BstUI CGCG 4 cut(s) 52, 251, 253, 839
BstV1I GCAGC 8 cut(s) 345, 565, 568, 755, 781, 944, 1066, 1094
BstV2I GAAGAC 1 cut(s) 789
BstX2I RGATCY 2 cut(s) 73, 470
BstYI RGATCY 2 cut(s) 73, 470
Bsu36I CCTNAGG 1 cut(s) 408
BsuRI GGCC 3 cut(s) 233, 816, 1038
BtgI CCRYGG 1 cut(s) 1062
BtgZI GCGATG 1 cut(s) 120
BtrI CACGTC 1 cut(s) 223
BtsIMutI CAGTG 3 cut(s) 643, 696, 769
BveI ACCTGC 2 cut(s) 587, 725
Cac8I GCNNGC 5 cut(s) 54, 193, 253, 363, 551
CciI TCATGA 2 cut(s) 574, 630
CfoI GCGC 3 cut(s) 58, 253, 255
Cfr13I GGNCC 2 cut(s) 815, 1036
CseI GACGC 2 cut(s) 140, 377
Csp6I GTAC 4 cut(s) 187, 489, 649, 702
CspCI CAANNNNNGTGG 2 cut(s) 646, 681
CviAII CATG 7 cut(s) 431, 575, 603, 631, 847, 990, 1063
CviQI GTAC 4 cut(s) 187, 489, 649, 702
DdeI CTNAG 5 cut(s) 279, 344, 408, 545, 1102
DpnI GATC 9 cut(s) 44, 75, 83, 472, 573, 585, 708, 903, 977
DpnII GATC 9 cut(s) 42, 73, 81, 470, 571, 583, 706, 901, 975
DraIII CACNNNGTG 2 cut(s) 289, 910
DrdI GACNNNNNNGTC 1 cut(s) 1064
DseDI GACNNNNNNGTC 1 cut(s) 1064
Eam1104I CTCTTC 2 cut(s) 167, 675
EarI CTCTTC 2 cut(s) 167, 675
EciI GGCGGA 1 cut(s) 230
Eco130I CCWWGG 1 cut(s) 1062
Eco31I GGTCTC 2 cut(s) 347, 1072
Eco81I CCTNAGG 1 cut(s) 408
EcoT14I CCWWGG 1 cut(s) 1062
ErhI CCWWGG 1 cut(s) 1062
Esp3I CGTCTC 1 cut(s) 52
FaeI CATG 7 cut(s) 434, 578, 606, 634, 850, 993, 1066
FaqI GGGAC 1 cut(s) 97
FatI CATG 7 cut(s) 430, 574, 602, 630, 846, 989, 1062
FauI CCCGC 2 cut(s) 322, 370
FauNDI CATATG 2 cut(s) 856, 884
FbaI TGATCA 2 cut(s) 81, 571
FspI TGCGCA 1 cut(s) 57
GlaI GCGC 3 cut(s) 57, 252, 254
GsaI CCCAGC 1 cut(s) 939
GsuI CTGGAG 2 cut(s) 499, 549
HaeIII GGCC 3 cut(s) 233, 816, 1038
HapII CCGG 2 cut(s) 325, 612
HgaI GACGC 2 cut(s) 140, 377
HhaI GCGC 3 cut(s) 58, 253, 255
Hin1II CATG 7 cut(s) 434, 578, 606, 634, 850, 993, 1066
Hin6I GCGC 3 cut(s) 56, 251, 253
HinP1I GCGC 3 cut(s) 56, 251, 253
HincII GTYRAC 1 cut(s) 335
HindII GTYRAC 1 cut(s) 335
HinfI GANTC 9 cut(s) 110, 264, 292, 385, 400, 608, 627, 1017, 1058
HpaII CCGG 2 cut(s) 325, 612
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 7 cut(s) 97, 335, 512, 626, 651, 668, 1057
Hpy188I TCNGA 8 cut(s) 64, 81, 140, 304, 347, 384, 953, 1105
Hpy188III TCNNGA 8 cut(s) 40, 325, 391, 575, 587, 631, 982, 1069
Hpy8I GTNNAC 7 cut(s) 97, 335, 512, 626, 651, 668, 1057
Hpy99I CGWCG 4 cut(s) 134, 224, 277, 371
HpyAV CCTTC 4 cut(s) 40, 500, 670, 952
HpyCH4III ACNGT 3 cut(s) 68, 638, 1075
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 9 cut(s) 512, 618, 720, 743, 797, 850, 932, 1032, 1082
HpyF10VI GCNNNNNNNGC 6 cut(s) 140, 166, 259, 377, 474, 836
HpyF3I CTNAG 5 cut(s) 279, 344, 408, 545, 1102
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 7 cut(s) 434, 578, 606, 634, 850, 993, 1066
HspAI GCGC 3 cut(s) 56, 251, 253
Kpn2I TCCGGA 1 cut(s) 324
Ksp22I TGATCA 2 cut(s) 81, 571
Kzo9I GATC 9 cut(s) 42, 73, 81, 470, 571, 583, 706, 901, 975
LguI GCTCTTC 1 cut(s) 167
LmnI GCTCC 5 cut(s) 140, 202, 385, 434, 497
Lsp1109I GCAGC 8 cut(s) 345, 565, 568, 755, 781, 944, 1066, 1094
LweI GCATC 1 cut(s) 755
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 5 cut(s) 25, 289, 439, 605, 912
MalI GATC 9 cut(s) 44, 75, 83, 472, 573, 585, 708, 903, 977
MboI GATC 9 cut(s) 42, 73, 81, 470, 571, 583, 706, 901, 975
MboII GAAGA 3 cut(s) 154, 692, 794
MflI RGATCY 2 cut(s) 73, 470
MhlI GDGCHC 4 cut(s) 150, 207, 514, 878
MluCI AATT 4 cut(s) 722, 738, 757, 789
MlyI GAGTC 6 cut(s) 119, 258, 286, 602, 621, 1052
MmeI TCCRAC 2 cut(s) 483, 879
MroI TCCGGA 1 cut(s) 324
MroXI GAANNNNTTC 1 cut(s) 9
MseI TTAA 3 cut(s) 450, 834, 1092
MslI CAYNNNNRTG 1 cut(s) 579
MspA1I CMGCKG 1 cut(s) 935
MspI CCGG 2 cut(s) 325, 612
MspR9I CCNGG 1 cut(s) 613
Mva1269I GAATGC 1 cut(s) 9
MvnI CGCG 4 cut(s) 52, 251, 253, 839
MwoI GCNNNNNNNGC 6 cut(s) 140, 166, 259, 377, 474, 836
NciI CCSGG 1 cut(s) 613
NcoI CCATGG 1 cut(s) 1062
NdeI CATATG 2 cut(s) 856, 884
NdeII GATC 9 cut(s) 42, 73, 81, 470, 571, 583, 706, 901, 975
NlaIII CATG 7 cut(s) 434, 578, 606, 634, 850, 993, 1066
NlaIV GGNNCC 5 cut(s) 75, 142, 381, 715, 1037
NmeAIII GCCGAG 2 cut(s) 169, 343
NmuCI GTSAC 4 cut(s) 25, 289, 439, 605
NsbI TGCGCA 1 cut(s) 57
PagI TCATGA 2 cut(s) 574, 630
PauI GCGCGC 1 cut(s) 251
PciSI GCTCTTC 1 cut(s) 167
PctI GAATGC 1 cut(s) 9
PdmI GAANNNNTTC 1 cut(s) 9
PfeI GAWTC 3 cut(s) 385, 400, 1017
Pfl23II CGTACG 1 cut(s) 186
PflMI CCANNNNNTGG 1 cut(s) 698
PleI GAGTC 6 cut(s) 118, 258, 286, 602, 621, 1052
PpsI GAGTC 6 cut(s) 118, 258, 286, 602, 621, 1052
PspFI CCCAGC 1 cut(s) 935
PspLI CGTACG 1 cut(s) 186
PspN4I GGNNCC 5 cut(s) 75, 142, 381, 715, 1037
PspPI GGNCC 2 cut(s) 815, 1036
PstI CTGCAG 2 cut(s) 1034, 1084
PsuI RGATCY 2 cut(s) 73, 470
PteI GCGCGC 1 cut(s) 251
PvuII CAGCTG 1 cut(s) 935
RsaI GTAC 4 cut(s) 188, 490, 650, 703
RsaNI GTAC 4 cut(s) 187, 489, 649, 702
RseI CAYNNNNRTG 1 cut(s) 579
SapI GCTCTTC 1 cut(s) 167
SaqAI TTAA 3 cut(s) 450, 834, 1092
Sau3AI GATC 9 cut(s) 42, 73, 81, 470, 571, 583, 706, 901, 975
Sau96I GGNCC 2 cut(s) 815, 1036
ScaI AGTACT 1 cut(s) 490
SchI GAGTC 6 cut(s) 119, 258, 286, 602, 621, 1052
ScrFI CCNGG 1 cut(s) 613
SduI GDGCHC 4 cut(s) 150, 207, 514, 878
SfaNI GCATC 1 cut(s) 755
SfcI CTRYAG 4 cut(s) 211, 492, 1030, 1080
SmiMI CAYNNNNRTG 1 cut(s) 579
SmlI CTYRAG 1 cut(s) 889
SmoI CTYRAG 1 cut(s) 889
Sse9I AATT 4 cut(s) 722, 738, 757, 789
SsiI CCGC 9 cut(s) 71, 102, 241, 249, 315, 363, 468, 839, 895
StyD4I CCNGG 1 cut(s) 611
StyI CCWWGG 1 cut(s) 1062
TaaI ACNGT 3 cut(s) 68, 638, 1075
TaiI ACGT 1 cut(s) 225
TaqI TCGA 4 cut(s) 219, 267, 564, 1070
TaqII GACCGA 1 cut(s) 329
TasI AATT 4 cut(s) 722, 738, 757, 789
TatI WGTACW 2 cut(s) 488, 648
TauI GCSGC 2 cut(s) 105, 251
TfiI GAWTC 3 cut(s) 385, 400, 1017
Tru1I TTAA 3 cut(s) 450, 834, 1092
Tru9I TTAA 3 cut(s) 450, 834, 1092
TscAI CASTG 3 cut(s) 643, 703, 769
TseFI GTSAC 4 cut(s) 25, 289, 439, 605
TseI GCWGC 8 cut(s) 358, 553, 556, 743, 794, 932, 1079, 1082
Tsp45I GTSAC 4 cut(s) 25, 289, 439, 605
TspDTI ATGAA 5 cut(s) 591, 647, 689, 795, 835
TspGWI ACGGA 2 cut(s) 436, 921
TspRI CASTG 3 cut(s) 643, 703, 769
Van91I CCANNNNNTGG 1 cut(s) 698
VneI GTGCAC 1 cut(s) 510
XapI RAATTY 1 cut(s) 722
XmnI GAANNNNTTC 1 cut(s) 9
ZrmI AGTACT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.