MD10G1066900.v1.1

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
9211555 .. 9214325
2771 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1066900.v1.1.491

Sequence Viewer

Length: 1116 bp
ATGGAACGCATTCTCTCTCTCCTCGTCACTTTCTCTCTCCTGATCGTCTCGCGTGCGCAATCGGACAGCGCAGATCCCCTGATCAGGCAAGTGGTGGACGGCGGCGATGAGTCCCACCACGACCACGACCACGACCACGTTCTCGGGGCCGAGCACCACTTCTCGCTCTTCAAGCACAAATACGGCAAGTCGTACGCGAGCAAGGAGGAGCACGACTACAGGTTCGACGTGTTCAAGGCGAACCTCCGCCGTGCCGCGCGCCACCAGCGGCTCGACCCCTCGGCTCAGCACGGCGTGACTCGGTTCTCCGATATGACCCCTGCCGAGTTCCGGAAAAGTCAACTCGGACTCAGAGGGCTGAAGCTGCCCGAGGACGCCACCAAGGCTCCGATTCTCCCGACGGAGAATCTGCCTGAGGATTTTGATTGGAGGGAGCATGGAGCCGTCACCGCCGTTAAAAATCAGGGTTCGTGCGGATCGTGCTGGAGTTTCAGTACTACAGGAGCGTTGGAAGGTGCACACTTTCTCGCAACTGGAGATCTTGTGAGCCTCAGCGAGCAGCAGCTTGTGGATTGCGATCATGAGTGTGATCCAGAGGAGGCAGGTTCATGTGACTCCGGATGCAATGGTGGACTCATGAACAGTGCCTTTGAGTACACACTCAAAGCTGGTGGACTAATGAAGGAAGAGGATTATCCATACACTGGTACTGATCGTGGAACCTGCAAATTTGACGAGAGCAAAATCGCAGCATCAGTTTCCAATTTCAGCGTTGTCTCCCTCGATGAGGATCAAATTGCTGCCAACCTTGTGAAAAATGGTCCTCTTGCAGTGGCTATTAACGCGGTGTTCATGCAAACTTATGTTGGTGGAGTTTCATGCCCCTACATATGCTCAAAGCGGTTGGATCACGGGGTGTTACTCGTAGGTTACGGTGCAGCTGGATATTCTCCCATCAGATTGAAGGAAAAGCCATACTGGATCATCAAGAACTCCTGGGGAGAGAACTGGGGAGAGAATGGATTCTACAAAATCTGCAGGGGCCGAAACATCTGTGGCGTGGACTCCATGGTCTCGACTGTTGCTGCAGCTTCGGTGAAGACCAACTCTGAGTAG

Protein Analysis

372

Amino Acids

40.67

Weight (kDa)

5.6

Isoelectric Point (pI)

29.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 54 - 110 1.9e-16 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 137 - 360 1.4e-75 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1070
Acc16I TGCGCA 1 cut(s) 57
Acc36I ACCTGC 2 cut(s) 593, 731
AccB7I CCANNNNNTGG 1 cut(s) 704
AccII CGCG 5 cut(s) 52, 197, 257, 259, 845
AccIII TCCGGA 2 cut(s) 330, 617
AciI CCGC 8 cut(s) 102, 247, 255, 268, 450, 474, 845, 901
AclWI GGATC 6 cut(s) 68, 484, 584, 798, 915, 989
AcsI RAATTY 1 cut(s) 728
AcuI CTGAAG 1 cut(s) 380
AcyI GRCGYC 1 cut(s) 375
AdeI CACNNNGTG 2 cut(s) 295, 916
AfaI GTAC 4 cut(s) 194, 496, 656, 709
AfiI CCNNNNNNNGG 4 cut(s) 84, 330, 704, 787
AflIII ACRYGT 1 cut(s) 228
AgsI TTSAA 3 cut(s) 172, 235, 964
AjiI CACGTC 1 cut(s) 229
AjnI CCWGG 1 cut(s) 995
AluBI AGCT 5 cut(s) 364, 565, 668, 941, 1091
AluI AGCT 5 cut(s) 364, 565, 668, 941, 1091
Alw21I GWGCWC 3 cut(s) 156, 213, 520
Alw26I GTCTC 3 cut(s) 52, 781, 1078
Alw44I GTGCAC 1 cut(s) 516
AlwI GGATC 6 cut(s) 68, 484, 584, 798, 915, 989
Ama87I CYCGRG 2 cut(s) 143, 368
Aor13HI TCCGGA 2 cut(s) 330, 617
AoxI GGCC 2 cut(s) 147, 1042
ApaLI GTGCAC 1 cut(s) 516
ApeKI GCWGC 8 cut(s) 364, 559, 562, 749, 800, 938, 1085, 1088
ApoI RAATTY 1 cut(s) 728
ArsI GACNNNNNNTTYG 2 cut(s) 206, 238
Asp700I GAANNNNTTC 2 cut(s) 9, 1022
AspLEI GCGC 4 cut(s) 58, 71, 259, 261
AspS9I GGNCC 3 cut(s) 147, 821, 1042
AsuHPI GGTGA 2 cut(s) 439, 1108
AvaI CYCGRG 2 cut(s) 143, 368
AvaII GGWCC 1 cut(s) 821
AxyI CCTNAGG 1 cut(s) 414
BaeGI GKGCMC 1 cut(s) 520
BbsI GAAGAC 1 cut(s) 1106
Bbv12I GWGCWC 3 cut(s) 156, 213, 520
BbvCI CCTCAGC 1 cut(s) 551
BbvI GCAGC 8 cut(s) 351, 571, 574, 761, 787, 950, 1072, 1100
BccI CCATC 1 cut(s) 962
BceAI ACGGC 6 cut(s) 115, 199, 234, 307, 428, 437
BciT130I CCWGG 1 cut(s) 997
BclI TGATCA 1 cut(s) 81
BcoDI GTCTC 3 cut(s) 52, 781, 1078
BfmI CTRYAG 4 cut(s) 217, 498, 1036, 1086
BfuAI ACCTGC 2 cut(s) 593, 731
BglI GCCNNNNNGGC 1 cut(s) 383
BglII AGATCT 1 cut(s) 538
BlpI GCTNAGC 1 cut(s) 285
BmcAI AGTACT 1 cut(s) 496
Bme1390I CCNGG 1 cut(s) 997
Bme18I GGWCC 1 cut(s) 821
BmeT110I CYCGRG 2 cut(s) 143, 368
BmgBI CACGTC 1 cut(s) 229
BmgT120I GGNCC 3 cut(s) 147, 821, 1042
BmiI GGNNCC 5 cut(s) 148, 387, 442, 721, 1043
BmrFI CCNGG 1 cut(s) 997
BmrI ACTGGG 1 cut(s) 1018
BmsI GCATC 2 cut(s) 611, 761
BmuI ACTGGG 1 cut(s) 1018
BpiI GAAGAC 1 cut(s) 1106
BpmI CTGGAG 2 cut(s) 505, 555
Bpu10I CCTNAGC 1 cut(s) 551
Bpu1102I GCTNAGC 1 cut(s) 285
BsaBI GATNNNNATC 2 cut(s) 576, 789
BsaHI GRCGYC 1 cut(s) 375
BsaI GGTCTC 1 cut(s) 1078
BsaJI CCNNGG 5 cut(s) 279, 369, 381, 996, 1068
BsaWI WCCGGW 2 cut(s) 330, 617
BsaXI ACNNNNNCTCC 6 cut(s) 370, 400, 478, 508, 528, 558
Bsc4I CCNNNNNNNGG 4 cut(s) 84, 330, 704, 787
Bse1I ACTGG 4 cut(s) 538, 709, 983, 1013
Bse21I CCTNAGG 1 cut(s) 414
Bse3DI GCAATG 1 cut(s) 631
Bse8I GATNNNNATC 2 cut(s) 576, 789
BseAI TCCGGA 2 cut(s) 330, 617
BseBI CCWGG 1 cut(s) 997
BseDI CCNNGG 5 cut(s) 279, 369, 381, 996, 1068
BseGI GGATG 1 cut(s) 626
BseJI GATNNNNATC 2 cut(s) 576, 789
BseLI CCNNNNNNNGG 4 cut(s) 84, 330, 704, 787
BseMI GCAATG 1 cut(s) 631
BseMII CTCAG 5 cut(s) 299, 364, 405, 565, 1101
BseNI ACTGG 4 cut(s) 538, 709, 983, 1013
BsePI GCGCGC 1 cut(s) 257
BseRI GAGGAG 3 cut(s) 11, 221, 611
BseSI GKGCMC 1 cut(s) 520
BseXI GCAGC 8 cut(s) 351, 571, 574, 761, 787, 950, 1072, 1100
BsgI GTGCAG 1 cut(s) 957
Bsh1236I CGCG 5 cut(s) 52, 197, 257, 259, 845
BshFI GGCC 2 cut(s) 149, 1044
BsiHKAI GWGCWC 3 cut(s) 156, 213, 520
BsiHKCI CYCGRG 2 cut(s) 143, 368
BsiSI CCGG 2 cut(s) 331, 618
BsiWI CGTACG 1 cut(s) 192
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 4 cut(s) 84, 330, 704, 787
BsmAI GTCTC 3 cut(s) 52, 781, 1078
BsmBI CGTCTC 1 cut(s) 52
BsmFI GGGAC 1 cut(s) 97
BsmI GAATGC 1 cut(s) 9
BsnI GGCC 2 cut(s) 149, 1044
Bso31I GGTCTC 1 cut(s) 1078
BsoBI CYCGRG 2 cut(s) 143, 368
Bsp1286I GDGCHC 3 cut(s) 156, 213, 520
Bsp13I TCCGGA 2 cut(s) 330, 617
Bsp1720I GCTNAGC 1 cut(s) 285
Bsp19I CCATGG 1 cut(s) 1068
BspACI CCGC 8 cut(s) 102, 247, 255, 268, 450, 474, 845, 901
BspANI GGCC 2 cut(s) 149, 1044
BspCNI CTCAG 5 cut(s) 298, 363, 406, 564, 1102
BspEI TCCGGA 2 cut(s) 330, 617
BspFNI CGCG 5 cut(s) 52, 197, 257, 259, 845
BspHI TCATGA 2 cut(s) 580, 636
BspLI GGNNCC 5 cut(s) 148, 387, 442, 721, 1043
BspMAI CTGCAG 2 cut(s) 1040, 1090
BspMI ACCTGC 2 cut(s) 593, 731
BspPI GGATC 6 cut(s) 68, 484, 584, 798, 915, 989
BspQI GCTCTTC 1 cut(s) 173
BspTNI GGTCTC 1 cut(s) 1078
BsrDI GCAATG 1 cut(s) 631
BsrI ACTGG 4 cut(s) 538, 709, 983, 1013
BssECI CCNNGG 5 cut(s) 279, 369, 381, 996, 1068
BssHII GCGCGC 1 cut(s) 257
BssNI GRCGYC 1 cut(s) 375
BssT1I CCWWGG 2 cut(s) 381, 1068
Bst2UI CCWGG 1 cut(s) 997
Bst4CI ACNGT 3 cut(s) 644, 935, 1081
Bst6I CTCTTC 2 cut(s) 173, 681
BstACI GRCGYC 1 cut(s) 375
BstC8I GCNNGC 4 cut(s) 54, 199, 259, 557
BstDEI CTNAG 5 cut(s) 285, 350, 414, 551, 1110
BstDSI CCRYGG 1 cut(s) 1068
BstENI CCTNNNNNAGG 1 cut(s) 785
BstF5I GGATG 1 cut(s) 626
BstFNI CGCG 5 cut(s) 52, 197, 257, 259, 845
BstHHI GCGC 4 cut(s) 58, 71, 259, 261
BstMAI GTCTC 3 cut(s) 52, 781, 1078
BstMWI GCNNNNNNNGC 7 cut(s) 172, 265, 364, 383, 449, 480, 842
BstNI CCWGG 1 cut(s) 997
BstSCI CCNGG 1 cut(s) 995
BstSFI CTRYAG 4 cut(s) 217, 498, 1036, 1086
BstSLI GKGCMC 1 cut(s) 520
BstUI CGCG 5 cut(s) 52, 197, 257, 259, 845
BstV1I GCAGC 8 cut(s) 351, 571, 574, 761, 787, 950, 1072, 1100
BstV2I GAAGAC 1 cut(s) 1106
BstX2I RGATCY 2 cut(s) 73, 538
BstYI RGATCY 2 cut(s) 73, 538
Bsu36I CCTNAGG 1 cut(s) 414
BsuRI GGCC 2 cut(s) 149, 1044
BtgI CCRYGG 1 cut(s) 1068
BtgZI GCGATG 1 cut(s) 120
BtrI CACGTC 1 cut(s) 229
BtsCI GGATG 1 cut(s) 626
BtsI GCAGTG 1 cut(s) 837
BtsIMutI CAGTG 3 cut(s) 649, 702, 837
BveI ACCTGC 2 cut(s) 593, 731
Cac8I GCNNGC 4 cut(s) 54, 199, 259, 557
CciI TCATGA 2 cut(s) 580, 636
CfoI GCGC 4 cut(s) 58, 71, 259, 261
Cfr13I GGNCC 3 cut(s) 147, 821, 1042
CseI GACGC 1 cut(s) 383
Csp6I GTAC 4 cut(s) 193, 495, 655, 708
CspCI CAANNNNNGTGG 2 cut(s) 652, 687
CviAII CATG 7 cut(s) 437, 581, 609, 637, 853, 879, 1069
CviQI GTAC 4 cut(s) 193, 495, 655, 708
DdeI CTNAG 5 cut(s) 285, 350, 414, 551, 1110
DraIII CACNNNGTG 2 cut(s) 295, 916
DrdI GACNNNNNNGTC 1 cut(s) 1070
DseDI GACNNNNNNGTC 1 cut(s) 1070
Eam1104I CTCTTC 2 cut(s) 173, 681
EarI CTCTTC 2 cut(s) 173, 681
EciI GGCGGA 1 cut(s) 236
Eco130I CCWWGG 2 cut(s) 381, 1068
Eco31I GGTCTC 1 cut(s) 1078
Eco47I GGWCC 1 cut(s) 821
Eco57I CTGAAG 1 cut(s) 380
Eco81I CCTNAGG 1 cut(s) 414
Eco88I CYCGRG 2 cut(s) 143, 368
EcoNI CCTNNNNNAGG 1 cut(s) 785
EcoRII CCWGG 1 cut(s) 995
EcoT14I CCWWGG 2 cut(s) 381, 1068
ErhI CCWWGG 2 cut(s) 381, 1068
Esp3I CGTCTC 1 cut(s) 52
FaeI CATG 7 cut(s) 440, 584, 612, 640, 856, 882, 1072
FaqI GGGAC 1 cut(s) 97
FatI CATG 7 cut(s) 436, 580, 608, 636, 852, 878, 1068
FauNDI CATATG 1 cut(s) 890
FbaI TGATCA 1 cut(s) 81
FokI GGATG 1 cut(s) 633
FspI TGCGCA 1 cut(s) 57
GlaI GCGC 4 cut(s) 57, 70, 258, 260
GsuI CTGGAG 2 cut(s) 505, 555
HaeIII GGCC 2 cut(s) 149, 1044
HapII CCGG 2 cut(s) 331, 618
HgaI GACGC 1 cut(s) 383
HhaI GCGC 4 cut(s) 58, 71, 259, 261
Hin1I GRCGYC 1 cut(s) 375
Hin1II CATG 7 cut(s) 440, 584, 612, 640, 856, 882, 1072
Hin6I GCGC 4 cut(s) 56, 69, 257, 259
HinP1I GCGC 4 cut(s) 56, 69, 257, 259
HincII GTYRAC 1 cut(s) 341
HindII GTYRAC 1 cut(s) 341
HinfI GANTC 9 cut(s) 110, 298, 348, 391, 406, 614, 633, 1023, 1064
HpaII CCGG 2 cut(s) 331, 618
HphI GGTGA 2 cut(s) 439, 1108
Hpy166II GTNNAC 7 cut(s) 97, 341, 518, 632, 657, 674, 1063
Hpy188I TCNGA 7 cut(s) 64, 310, 347, 353, 390, 959, 1111
Hpy188III TCNNGA 9 cut(s) 40, 331, 397, 581, 593, 618, 637, 988, 1075
Hpy8I GTNNAC 7 cut(s) 97, 341, 518, 632, 657, 674, 1063
Hpy99I CGWCG 2 cut(s) 230, 403
HpyAV CCTTC 3 cut(s) 506, 676, 958
HpyCH4III ACNGT 3 cut(s) 644, 935, 1081
HpyCH4IV ACGT 2 cut(s) 138, 228
HpyCH4V TGCA 8 cut(s) 518, 624, 726, 830, 856, 938, 1038, 1088
HpyF10VI GCNNNNNNNGC 7 cut(s) 172, 265, 364, 383, 449, 480, 842
HpyF3I CTNAG 5 cut(s) 285, 350, 414, 551, 1110
HpySE526I ACGT 2 cut(s) 138, 228
Hsp92I GRCGYC 1 cut(s) 375
Hsp92II CATG 7 cut(s) 440, 584, 612, 640, 856, 882, 1072
HspAI GCGC 4 cut(s) 56, 69, 257, 259
Kpn2I TCCGGA 2 cut(s) 330, 617
Ksp22I TGATCA 1 cut(s) 81
LguI GCTCTTC 1 cut(s) 173
LmnI GCTCC 5 cut(s) 208, 391, 433, 440, 503
Lsp1109I GCAGC 8 cut(s) 351, 571, 574, 761, 787, 950, 1072, 1100
LweI GCATC 2 cut(s) 611, 761
MaeII ACGT 2 cut(s) 138, 228
MaeIII GTNAC 6 cut(s) 25, 295, 445, 611, 918, 929
MboII GAAGA 3 cut(s) 160, 698, 1111
MflI RGATCY 2 cut(s) 73, 538
MhlI GDGCHC 3 cut(s) 156, 213, 520
MluCI AATT 3 cut(s) 728, 763, 795
MlyI GAGTC 6 cut(s) 119, 292, 342, 608, 627, 1058
MmeI TCCRAC 2 cut(s) 489, 885
MroI TCCGGA 2 cut(s) 330, 617
MroXI GAANNNNTTC 2 cut(s) 9, 1022
MseI TTAA 2 cut(s) 456, 840
MslI CAYNNNNRTG 1 cut(s) 585
MspA1I CMGCKG 2 cut(s) 268, 941
MspI CCGG 2 cut(s) 331, 618
MspR9I CCNGG 1 cut(s) 997
Mva1269I GAATGC 1 cut(s) 9
MvaI CCWGG 1 cut(s) 997
MvnI CGCG 5 cut(s) 52, 197, 257, 259, 845
MwoI GCNNNNNNNGC 7 cut(s) 172, 265, 364, 383, 449, 480, 842
NcoI CCATGG 1 cut(s) 1068
NdeI CATATG 1 cut(s) 890
NlaIII CATG 7 cut(s) 440, 584, 612, 640, 856, 882, 1072
NlaIV GGNNCC 5 cut(s) 148, 387, 442, 721, 1043
NmeAIII GCCGAG 3 cut(s) 175, 260, 349
NmuCI GTSAC 4 cut(s) 25, 295, 445, 611
NsbI TGCGCA 1 cut(s) 57
PagI TCATGA 2 cut(s) 580, 636
PauI GCGCGC 1 cut(s) 257
PciSI GCTCTTC 1 cut(s) 173
PcsI WCGNNNNNNNCGW 1 cut(s) 476
PctI GAATGC 1 cut(s) 9
PdmI GAANNNNTTC 2 cut(s) 9, 1022
PfeI GAWTC 3 cut(s) 391, 406, 1023
Pfl23II CGTACG 1 cut(s) 192
PflMI CCANNNNNTGG 1 cut(s) 704
PleI GAGTC 6 cut(s) 118, 292, 342, 608, 627, 1058
PpsI GAGTC 6 cut(s) 118, 292, 342, 608, 627, 1058
Psp6I CCWGG 1 cut(s) 995
PspGI CCWGG 1 cut(s) 995
PspLI CGTACG 1 cut(s) 192
PspN4I GGNNCC 5 cut(s) 148, 387, 442, 721, 1043
PspPI GGNCC 3 cut(s) 147, 821, 1042
PstI CTGCAG 2 cut(s) 1040, 1090
PsuI RGATCY 2 cut(s) 73, 538
PteI GCGCGC 1 cut(s) 257
PvuII CAGCTG 1 cut(s) 941
RsaI GTAC 4 cut(s) 194, 496, 656, 709
RsaNI GTAC 4 cut(s) 193, 495, 655, 708
RseI CAYNNNNRTG 1 cut(s) 585
SapI GCTCTTC 1 cut(s) 173
SaqAI TTAA 2 cut(s) 456, 840
Sau96I GGNCC 3 cut(s) 147, 821, 1042
ScaI AGTACT 1 cut(s) 496
SchI GAGTC 6 cut(s) 119, 292, 342, 608, 627, 1058
ScrFI CCNGG 1 cut(s) 997
SduI GDGCHC 3 cut(s) 156, 213, 520
SfaNI GCATC 2 cut(s) 611, 761
SfcI CTRYAG 4 cut(s) 217, 498, 1036, 1086
SinI GGWCC 1 cut(s) 821
SmiMI CAYNNNNRTG 1 cut(s) 585
Sse9I AATT 3 cut(s) 728, 763, 795
SsiI CCGC 8 cut(s) 102, 247, 255, 268, 450, 474, 845, 901
StyD4I CCNGG 1 cut(s) 995
StyI CCWWGG 2 cut(s) 381, 1068
TaaI ACNGT 3 cut(s) 644, 935, 1081
TaiI ACGT 2 cut(s) 141, 231
TaqI TCGA 4 cut(s) 225, 273, 783, 1076
TasI AATT 3 cut(s) 728, 763, 795
TatI WGTACW 2 cut(s) 494, 654
TauI GCSGC 3 cut(s) 105, 257, 271
TfiI GAWTC 3 cut(s) 391, 406, 1023
Tru1I TTAA 2 cut(s) 456, 840
Tru9I TTAA 2 cut(s) 456, 840
TscAI CASTG 3 cut(s) 649, 709, 837
TseFI GTSAC 4 cut(s) 25, 295, 445, 611
TseI GCWGC 8 cut(s) 364, 559, 562, 749, 800, 938, 1085, 1088
Tsp45I GTSAC 4 cut(s) 25, 295, 445, 611
TspDTI ATGAA 5 cut(s) 597, 653, 695, 841, 867
TspGWI ACGGA 1 cut(s) 416
TspRI CASTG 3 cut(s) 649, 709, 837
Van91I CCANNNNNTGG 1 cut(s) 704
VneI GTGCAC 1 cut(s) 516
VpaK11BI GGWCC 1 cut(s) 821
XagI CCTNNNNNAGG 1 cut(s) 785
XapI RAATTY 1 cut(s) 728
XmnI GAANNNNTTC 2 cut(s) 9, 1022
ZrmI AGTACT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.