Rw6G012820

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
23621886 .. 23624064
2179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G012820.1

Sequence Viewer

Length: 1122 bp
ATGGATCGAATTCTCTCTCTCTTCCTCTTCTCTTCTCTCCTCTTCTTCCTCGCTCGCGCCGACGTGGACGGCGGCGATCCGTTGATCCGTCAAGTCGTGGACGGCGGCGATGAAGCCCCTCACCACCATCACCACCACCACGATCACGACGGCGACCAGATGCTCGGAGCCGAGCACCACTTCTCGCTGTTCAAGCGCAAATTCGGCAAGTCGTACGCGAGCCAGGAGGAGCACGACTACAGGTTCGAGGTGTTCAAGACCAACATGAGGAGGGCCAAGAGGCACCAGCGAATGGACCCCACGGCCCAACACGGCGTCACTCGGTTCTCCGATTTGACTCCGGCCGAGTTCAGGAGAAGCCATTTGGGGCTCCGAGGGCTGAGGCTGCCGGCCGATGCCAACACCGCTCCGATTCTGCCTACCGAGAATCTGCCTGAGGATTTTGATTGGAGAGAGCATGGAGCTGTTACTGAAGTCAAAAATCAGGGTTCGTGCGGGTCGTGCTGGAGTTTCAGCACCACAGGAGCTTTGGAAGGTGCCCACTTCCTTGCGACTGGGGAGCTTGTGAGCCTCAGCGAGCAGCAGCTTGTGGATTGCGATCACGAGTGCGATCCAGAGGAGGCAGGTTCATGCGACGCTGGTTGCAATGGTGGGCTGATGAACAGCGCCTTTGAGTACACACTCAAAGCTGGTGGACTTATGAAGGAAAAAGATTATCCATACACTGGTACTGATCGTGGAACCTGCAAGTTTGACAAGACCAAAATTGCAGCCAAAGTTTCCAACTTCAGTGTTGTCTCCCTTGATGAAGATCAAATTGCTGCCAATCTTGTTAAGAATGGCCCTCTTGCTGTGGCTATTAATGCTGTGTTCATGCAAACATATGTTGGTGGAGTGTCATGCCCCTACATTTGCTCAAAGAGGTTGGACCATGGAGTTTTGTTAGTTGGTTATGGTGCGTCTGCCTACGCACCCGTCAGAATGAAGGAGAAGCCATACTGGATCATAAAGAACTCATGGGGCGAGAACTGGGGAGAGAAGGGATTCTACAAAATCTGCAGGGGCCGTAATATCTGTGGCGTGGACTCCATGGTTTCAACTGTTGCTGCAGTTGAGCTATAG

Protein Analysis

373

Amino Acids

41.33

Weight (kDa)

6.05

Isoelectric Point (pI)

29.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 61 - 117 6.2e-17 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 144 - 367 4.3e-76 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 614, 752
AccB1I GGYRCC 2 cut(s) 282, 536
AccB7I CCANNNNNTGG 2 cut(s) 292, 725
AccBSI CCGCTC 1 cut(s) 407
AccII CGCG 2 cut(s) 57, 218
AciI CCGC 4 cut(s) 72, 105, 405, 495
AclWI GGATC 5 cut(s) 12, 71, 79, 605, 1010
AcoI YGGCCR 2 cut(s) 342, 390
AcsI RAATTY 2 cut(s) 9, 200
AcuI CTGAAG 2 cut(s) 492, 772
AcyI GRCGYC 1 cut(s) 315
AfaI GTAC 3 cut(s) 215, 677, 730
AfiI CCNNNNNNNGG 4 cut(s) 267, 292, 351, 725
AgsI TTSAA 3 cut(s) 193, 256, 1098
AjiI CACGTC 1 cut(s) 64
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 6 cut(s) 464, 527, 562, 586, 689, 1117
AluI AGCT 6 cut(s) 464, 527, 562, 586, 689, 1117
Alw21I GWGCWC 2 cut(s) 177, 234
Alw26I GTCTC 1 cut(s) 802
AlwI GGATC 5 cut(s) 12, 71, 79, 605, 1010
AoxI GGCC 6 cut(s) 273, 303, 342, 390, 841, 1063
ApeKI GCWGC 6 cut(s) 385, 580, 583, 770, 821, 1106
ApoI RAATTY 2 cut(s) 9, 200
ArsI GACNNNNNNTTYG 2 cut(s) 227, 259
AseI ATTAAT 1 cut(s) 861
Asp700I GAANNNNTTC 1 cut(s) 1043
AspLEI GCGC 3 cut(s) 59, 198, 668
AspS9I GGNCC 6 cut(s) 273, 295, 304, 842, 928, 1063
AsuHPI GGTGA 2 cut(s) 113, 122
AvaII GGWCC 2 cut(s) 295, 928
AxyI CCTNAGG 1 cut(s) 435
BaeGI GKGCMC 1 cut(s) 541
BanI GGYRCC 2 cut(s) 282, 536
BanII GRGCYC 1 cut(s) 372
BarI GAAGNNNNNNTAC 2 cut(s) 1031, 1063
BauI CACGAG 1 cut(s) 602
Bbv12I GWGCWC 2 cut(s) 177, 234
BbvCI CCTCAGC 2 cut(s) 380, 572
BbvI GCAGC 6 cut(s) 372, 592, 595, 782, 808, 1093
BccI CCATC 1 cut(s) 135
BceAI ACGGC 6 cut(s) 85, 118, 166, 318, 328, 1050
BciT130I CCWGG 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 802
BfmI CTRYAG 4 cut(s) 238, 1057, 1107, 1118
BfoI RGCGCY 1 cut(s) 669
BfuAI ACCTGC 2 cut(s) 614, 752
BisI GCNGC 8 cut(s) 73, 106, 386, 581, 584, 771, 822, 1107
BlsI GCNGC 8 cut(s) 74, 107, 387, 582, 585, 772, 823, 1108
Bme1390I CCNGG 1 cut(s) 224
Bme18I GGWCC 2 cut(s) 295, 928
BmgBI CACGTC 1 cut(s) 64
BmgT120I GGNCC 6 cut(s) 273, 295, 304, 842, 928, 1063
BmiI GGNNCC 7 cut(s) 169, 284, 297, 371, 538, 742, 1064
BmrFI CCNGG 1 cut(s) 224
BmrI ACTGGG 2 cut(s) 564, 1039
BmsI GCATC 2 cut(s) 150, 385
BmuI ACTGGG 2 cut(s) 564, 1039
BpmI CTGGAG 1 cut(s) 526
Bpu10I CCTNAGC 2 cut(s) 380, 572
BsaBI GATNNNNATC 2 cut(s) 597, 810
BsaHI GRCGYC 1 cut(s) 315
BsaJI CCNNGG 4 cut(s) 300, 373, 931, 1089
Bsc4I CCNNNNNNNGG 4 cut(s) 267, 292, 351, 725
Bse118I RCCGGY 1 cut(s) 388
Bse1I ACTGG 4 cut(s) 559, 730, 1004, 1034
Bse21I CCTNAGG 1 cut(s) 435
Bse3DI GCAATG 1 cut(s) 652
Bse8I GATNNNNATC 2 cut(s) 597, 810
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 4 cut(s) 300, 373, 931, 1089
BseJI GATNNNNATC 2 cut(s) 597, 810
BseLI CCNNNNNNNGG 4 cut(s) 267, 292, 351, 725
BseMI GCAATG 1 cut(s) 652
BseMII CTCAG 3 cut(s) 371, 426, 586
BseNI ACTGG 4 cut(s) 559, 730, 1004, 1034
BseRI GAGGAG 4 cut(s) 29, 242, 283, 632
BseSI GKGCMC 1 cut(s) 541
BseX3I CGGCCG 2 cut(s) 342, 390
BseXI GCAGC 6 cut(s) 372, 592, 595, 782, 808, 1093
Bsh1236I CGCG 2 cut(s) 57, 218
Bsh1285I CGRYCG 2 cut(s) 345, 393
BshFI GGCC 6 cut(s) 275, 305, 344, 392, 843, 1065
BshNI GGYRCC 2 cut(s) 282, 536
BsiEI CGRYCG 2 cut(s) 345, 393
BsiHKAI GWGCWC 2 cut(s) 177, 234
BsiSI CCGG 2 cut(s) 341, 389
BsiWI CGTACG 1 cut(s) 213
BslI CCNNNNNNNGG 4 cut(s) 267, 292, 351, 725
BsmAI GTCTC 1 cut(s) 802
BsnI GGCC 6 cut(s) 275, 305, 344, 392, 843, 1065
Bsp1286I GDGCHC 4 cut(s) 177, 234, 372, 541
Bsp143I GATC 9 cut(s) 4, 76, 84, 142, 598, 610, 733, 811, 1002
Bsp19I CCATGG 2 cut(s) 931, 1089
BspACI CCGC 4 cut(s) 72, 105, 405, 495
BspANI GGCC 6 cut(s) 275, 305, 344, 392, 843, 1065
BspCNI CTCAG 3 cut(s) 372, 427, 585
BspFNI CGCG 2 cut(s) 57, 218
BspLI GGNNCC 7 cut(s) 169, 284, 297, 371, 538, 742, 1064
BspMAI CTGCAG 2 cut(s) 1061, 1111
BspMI ACCTGC 2 cut(s) 614, 752
BspPI GGATC 5 cut(s) 12, 71, 79, 605, 1010
BspT107I GGYRCC 2 cut(s) 282, 536
BsrBI CCGCTC 1 cut(s) 407
BsrDI GCAATG 1 cut(s) 652
BsrFI RCCGGY 1 cut(s) 388
BsrI ACTGG 4 cut(s) 559, 730, 1004, 1034
BssAI RCCGGY 1 cut(s) 388
BssECI CCNNGG 4 cut(s) 300, 373, 931, 1089
BssMI GATC 9 cut(s) 4, 76, 84, 142, 598, 610, 733, 811, 1002
BssNI GRCGYC 1 cut(s) 315
BssSI CACGAG 1 cut(s) 602
BssT1I CCWWGG 2 cut(s) 931, 1089
Bst2BI CACGAG 1 cut(s) 602
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 1102
Bst6I CTCTTC 4 cut(s) 26, 32, 37, 47
BstACI GRCGYC 1 cut(s) 315
BstC8I GCNNGC 4 cut(s) 55, 220, 390, 578
BstDEI CTNAG 3 cut(s) 380, 435, 572
BstDSI CCRYGG 3 cut(s) 300, 931, 1089
BstFNI CGCG 2 cut(s) 57, 218
BstH2I RGCGCY 1 cut(s) 669
BstHHI GCGC 3 cut(s) 59, 198, 668
BstKTI GATC 9 cut(s) 7, 79, 87, 145, 601, 613, 736, 814, 1005
BstMAI GTCTC 1 cut(s) 802
BstMBI GATC 9 cut(s) 4, 76, 84, 142, 598, 610, 733, 811, 1002
BstMCI CGRYCG 2 cut(s) 345, 393
BstMWI GCNNNNNNNGC 7 cut(s) 193, 204, 376, 385, 404, 501, 863
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 222
BstSFI CTRYAG 4 cut(s) 238, 1057, 1107, 1118
BstSLI GKGCMC 1 cut(s) 541
BstUI CGCG 2 cut(s) 57, 218
BstV1I GCAGC 6 cut(s) 372, 592, 595, 782, 808, 1093
BstZI CGGCCG 2 cut(s) 342, 390
Bsu36I CCTNAGG 1 cut(s) 435
BsuRI GGCC 6 cut(s) 275, 305, 344, 392, 843, 1065
BtgI CCRYGG 3 cut(s) 300, 931, 1089
BtgZI GCGATG 1 cut(s) 123
BtrI CACGTC 1 cut(s) 64
BtsIMutI CAGTG 2 cut(s) 723, 796
BveI ACCTGC 2 cut(s) 614, 752
Cac8I GCNNGC 4 cut(s) 55, 220, 390, 578
CfoI GCGC 3 cut(s) 59, 198, 668
Cfr10I RCCGGY 1 cut(s) 388
Cfr13I GGNCC 6 cut(s) 273, 295, 304, 842, 928, 1063
CseI GACGC 3 cut(s) 304, 644, 948
Csp6I GTAC 3 cut(s) 214, 676, 729
CspCI CAANNNNNGTGG 2 cut(s) 673, 708
CviAII CATG 8 cut(s) 265, 458, 630, 874, 900, 932, 1017, 1090
CviQI GTAC 3 cut(s) 214, 676, 729
DdeI CTNAG 3 cut(s) 380, 435, 572
DpnI GATC 9 cut(s) 6, 78, 86, 144, 600, 612, 735, 813, 1004
DpnII GATC 9 cut(s) 4, 76, 84, 142, 598, 610, 733, 811, 1002
EaeI YGGCCR 2 cut(s) 342, 390
EagI CGGCCG 2 cut(s) 342, 390
Eam1104I CTCTTC 4 cut(s) 26, 32, 37, 47
EarI CTCTTC 4 cut(s) 26, 32, 37, 47
EclXI CGGCCG 2 cut(s) 342, 390
Eco130I CCWWGG 2 cut(s) 931, 1089
Eco24I GRGCYC 1 cut(s) 372
Eco47I GGWCC 2 cut(s) 295, 928
Eco52I CGGCCG 2 cut(s) 342, 390
Eco57I CTGAAG 2 cut(s) 492, 772
Eco81I CCTNAGG 1 cut(s) 435
EcoRI GAATTC 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 222
EcoT14I CCWWGG 2 cut(s) 931, 1089
EcoT38I GRGCYC 1 cut(s) 372
ErhI CCWWGG 2 cut(s) 931, 1089
FaeI CATG 8 cut(s) 268, 461, 633, 877, 903, 935, 1020, 1093
FatI CATG 8 cut(s) 264, 457, 629, 873, 899, 931, 1016, 1089
FauI CCCGC 1 cut(s) 488
FauNDI CATATG 1 cut(s) 883
Fnu4HI GCNGC 8 cut(s) 73, 106, 386, 581, 584, 771, 822, 1107
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 8 cut(s) 73, 106, 386, 581, 584, 771, 822, 1107
GlaI GCGC 3 cut(s) 58, 197, 667
GluI GCNGC 8 cut(s) 73, 106, 386, 581, 584, 771, 822, 1107
GsuI CTGGAG 1 cut(s) 526
HaeII RGCGCY 1 cut(s) 669
HaeIII GGCC 6 cut(s) 275, 305, 344, 392, 843, 1065
HapII CCGG 2 cut(s) 341, 389
HgaI GACGC 3 cut(s) 304, 644, 948
HhaI GCGC 3 cut(s) 59, 198, 668
Hin1I GRCGYC 1 cut(s) 315
Hin1II CATG 8 cut(s) 268, 461, 633, 877, 903, 935, 1020, 1093
Hin6I GCGC 3 cut(s) 57, 196, 666
HinP1I GCGC 3 cut(s) 57, 196, 666
HinfI GANTC 5 cut(s) 337, 412, 427, 1044, 1085
HpaII CCGG 2 cut(s) 341, 389
HphI GGTGA 2 cut(s) 113, 122
Hpy166II GTNNAC 5 cut(s) 67, 100, 678, 695, 1084
Hpy188I TCNGA 5 cut(s) 167, 331, 374, 411, 980
Hpy188III TCNNGA 5 cut(s) 146, 256, 352, 602, 614
Hpy8I GTNNAC 5 cut(s) 67, 100, 678, 695, 1084
Hpy99I CGWCG 3 cut(s) 65, 152, 638
HpyAV CCTTC 4 cut(s) 527, 697, 979, 1033
HpyCH4III ACNGT 1 cut(s) 1102
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 6 cut(s) 645, 747, 770, 877, 1059, 1109
HpyF10VI GCNNNNNNNGC 7 cut(s) 193, 204, 376, 385, 404, 501, 863
HpyF3I CTNAG 3 cut(s) 380, 435, 572
HpySE526I ACGT 1 cut(s) 63
Hsp92I GRCGYC 1 cut(s) 315
Hsp92II CATG 8 cut(s) 268, 461, 633, 877, 903, 935, 1020, 1093
HspAI GCGC 3 cut(s) 57, 196, 666
KroI GCCGGC 1 cut(s) 388
KroNI GCCGGC 1 cut(s) 390
Kzo9I GATC 9 cut(s) 4, 76, 84, 142, 598, 610, 733, 811, 1002
LmnI GCTCC 7 cut(s) 167, 229, 375, 412, 461, 524, 559
Lsp1109I GCAGC 6 cut(s) 372, 592, 595, 782, 808, 1093
LweI GCATC 2 cut(s) 150, 385
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 2 cut(s) 316, 466
MalI GATC 9 cut(s) 6, 78, 86, 144, 600, 612, 735, 813, 1004
MbiI CCGCTC 1 cut(s) 407
MboI GATC 9 cut(s) 4, 76, 84, 142, 598, 610, 733, 811, 1002
MboII GAAGA 6 cut(s) 13, 19, 24, 34, 37, 821
MhlI GDGCHC 4 cut(s) 177, 234, 372, 541
MluCI AATT 4 cut(s) 9, 200, 765, 816
MlyI GAGTC 2 cut(s) 331, 1079
MmeI TCCRAC 2 cut(s) 807, 906
MroNI GCCGGC 1 cut(s) 388
MroXI GAANNNNTTC 1 cut(s) 1043
MseI TTAA 2 cut(s) 834, 861
MspI CCGG 2 cut(s) 341, 389
MspR9I CCNGG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 224
MvnI CGCG 2 cut(s) 57, 218
MwoI GCNNNNNNNGC 7 cut(s) 193, 204, 376, 385, 404, 501, 863
NaeI GCCGGC 1 cut(s) 390
NcoI CCATGG 2 cut(s) 931, 1089
NdeI CATATG 1 cut(s) 883
NdeII GATC 9 cut(s) 4, 76, 84, 142, 598, 610, 733, 811, 1002
NgoMIV GCCGGC 1 cut(s) 388
NlaIII CATG 8 cut(s) 268, 461, 633, 877, 903, 935, 1020, 1093
NlaIV GGNNCC 7 cut(s) 169, 284, 297, 371, 538, 742, 1064
NmeAIII GCCGAG 2 cut(s) 196, 370
NmuCI GTSAC 1 cut(s) 316
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 497
PdiI GCCGGC 1 cut(s) 390
PdmI GAANNNNTTC 1 cut(s) 1043
PfeI GAWTC 3 cut(s) 412, 427, 1044
Pfl23II CGTACG 1 cut(s) 213
PflMI CCANNNNNTGG 2 cut(s) 292, 725
PkrI GCNGC 8 cut(s) 74, 107, 387, 582, 585, 772, 823, 1108
PleI GAGTC 2 cut(s) 331, 1079
PpsI GAGTC 2 cut(s) 331, 1079
PshBI ATTAAT 1 cut(s) 861
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspLI CGTACG 1 cut(s) 213
PspN4I GGNNCC 7 cut(s) 169, 284, 297, 371, 538, 742, 1064
PspPI GGNCC 6 cut(s) 273, 295, 304, 842, 928, 1063
PstI CTGCAG 2 cut(s) 1061, 1111
RsaI GTAC 3 cut(s) 215, 677, 730
RsaNI GTAC 3 cut(s) 214, 676, 729
SaqAI TTAA 2 cut(s) 834, 861
SatI GCNGC 8 cut(s) 73, 106, 386, 581, 584, 771, 822, 1107
Sau3AI GATC 9 cut(s) 4, 76, 84, 142, 598, 610, 733, 811, 1002
Sau96I GGNCC 6 cut(s) 273, 295, 304, 842, 928, 1063
SchI GAGTC 2 cut(s) 331, 1079
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 4 cut(s) 177, 234, 372, 541
SfaNI GCATC 2 cut(s) 150, 385
SfcI CTRYAG 4 cut(s) 238, 1057, 1107, 1118
SinI GGWCC 2 cut(s) 295, 928
Sse9I AATT 4 cut(s) 9, 200, 765, 816
SsiI CCGC 4 cut(s) 72, 105, 405, 495
StyD4I CCNGG 1 cut(s) 222
StyI CCWWGG 2 cut(s) 931, 1089
TaaI ACNGT 1 cut(s) 1102
TaiI ACGT 1 cut(s) 66
TaqI TCGA 2 cut(s) 7, 246
TasI AATT 4 cut(s) 9, 200, 765, 816
TatI WGTACW 1 cut(s) 675
TauI GCSGC 2 cut(s) 75, 108
TfiI GAWTC 3 cut(s) 412, 427, 1044
Tru1I TTAA 2 cut(s) 834, 861
Tru9I TTAA 2 cut(s) 834, 861
TscAI CASTG 2 cut(s) 730, 796
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 6 cut(s) 385, 580, 583, 770, 821, 1106
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 7 cut(s) 126, 618, 674, 716, 822, 862, 998
TspGWI ACGGA 2 cut(s) 69, 77
TspRI CASTG 2 cut(s) 730, 796
Van91I CCANNNNNTGG 2 cut(s) 292, 725
VpaK11BI GGWCC 2 cut(s) 295, 928
VspI ATTAAT 1 cut(s) 861
XapI RAATTY 2 cut(s) 9, 200
XcmI CCANNNNNNNNNTGG 1 cut(s) 526
XmnI GAANNNNTTC 1 cut(s) 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.