RchiOBHm_Chr6g0266691

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
23181576 .. 23184023
2448 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23918

Sequence Viewer

Length: 1125 bp
ATGGATCGAATTCTCTCTCTCTTCCTCTTCTCTTCTCTCCTCTTCTTCCTCGCTCGCGCTGACGTGGACGGTGGCGATCCGTTGATCCGTCAAGTCGTGGACGGCGGCGATGATGAAGCCCCTCGCCACCATCACCACCACCACGATCACGACGGCGAACAGATGCTCGGAGCCGAGCACCACTTCTCGCTGTTCAAGCGCAAATTCGGCAAGTCGTACGCGAGCCAGGAGGAGCACGACTACAGGTTCGAGGTGTTCAAGACCAACATGAGGAGGGCCAAGAGGCACCAGCGAATGGACCCCACGGCCCAACACGGCGTCACTCGGTTCTCCGATTTGACTCCGGCCGAGTTCAGGAGAAGCCATTTGGGGCTCCGAGGGCTGAGGCTGCCGGCCGATGCCAACACCGCTCCGATTCTGCCTACCGAGAATCTGCCTGAGGATTTTGATTGGAGAGAGCATGGAGCTGTTACTGAAGTCAAAAATCAGGGTTCGTGCGGGTCGTGCTGGAGTTTCAGCACCACAGGAGCTTTGGAAGGTGCCCACTTCCTTGCGACTGGGGAGCTTGTGAGCCTCAGCGAGCAGCAGCTTGTGGATTGCGATCACGAGTGCGATCCAGAGGAGGCAGGTTCATGCGACGCTGGTTGCAATGGTGGGCTCATGAACAGTGCCTTTGAGTACACACTCAAAGCTGGTGGACTTATGAAGGAAAAAGATTATCCATACACTGGTACTGATCGTGGAACCTGCAAGTTTGACAAGACCAAAATTGCAGCCAAAGTTTCCAACTTCAGTGTTGTCTCCCTTGATGAAGATCAAATTGCTGCCAATCTTGTTAAGAATGGCCCTCTTGCTGTGGCTATTAATGCTGTGTTCATGCAAACATATGTTGGTGGAGTGTCATGCCCCTACATTTGCTCAAAGAGGTTGGACCATGGAGTTTTGTTAGTTGGTTATGGTGCGTCTGCCTACGCACCCGTCAGAATGAAGGAGAAGCCATACTGGATCATAAAGAACTCATGGGGCGAGAACTGGGGAGAGAAGGGATTCTACAAAATCTGCAGGGGCCGTAATATCTGTGGCGTGGACTCCATGGTTTCAACTGTTGCTGCAGTTGAGCTATAG

Protein Analysis

374

Amino Acids

41.47

Weight (kDa)

6.01

Isoelectric Point (pI)

29.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 62 - 118 6.2e-17 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 145 - 368 4.3e-76 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 617, 755
AccB1I GGYRCC 2 cut(s) 285, 539
AccB7I CCANNNNNTGG 2 cut(s) 295, 728
AccBSI CCGCTC 1 cut(s) 410
AccII CGCG 2 cut(s) 57, 221
AciI CCGC 3 cut(s) 105, 408, 498
AclWI GGATC 5 cut(s) 12, 71, 79, 608, 1013
AcoI YGGCCR 2 cut(s) 345, 393
AcsI RAATTY 2 cut(s) 9, 203
AcuI CTGAAG 2 cut(s) 495, 775
AcyI GRCGYC 1 cut(s) 318
AfaI GTAC 3 cut(s) 218, 680, 733
AfiI CCNNNNNNNGG 4 cut(s) 270, 295, 354, 728
AgsI TTSAA 3 cut(s) 196, 259, 1101
AjiI CACGTC 1 cut(s) 64
AjnI CCWGG 1 cut(s) 225
AluBI AGCT 6 cut(s) 467, 530, 565, 589, 692, 1120
AluI AGCT 6 cut(s) 467, 530, 565, 589, 692, 1120
Alw21I GWGCWC 2 cut(s) 180, 237
Alw26I GTCTC 1 cut(s) 805
AlwI GGATC 5 cut(s) 12, 71, 79, 608, 1013
AoxI GGCC 6 cut(s) 276, 306, 345, 393, 844, 1066
ApeKI GCWGC 6 cut(s) 388, 583, 586, 773, 824, 1109
ApoI RAATTY 2 cut(s) 9, 203
ArsI GACNNNNNNTTYG 2 cut(s) 230, 262
AseI ATTAAT 1 cut(s) 864
Asp700I GAANNNNTTC 1 cut(s) 1046
AspLEI GCGC 2 cut(s) 59, 201
AspS9I GGNCC 6 cut(s) 276, 298, 307, 845, 931, 1066
AsuHPI GGTGA 1 cut(s) 125
AvaII GGWCC 2 cut(s) 298, 931
AxyI CCTNAGG 1 cut(s) 438
BaeGI GKGCMC 1 cut(s) 544
BanI GGYRCC 2 cut(s) 285, 539
BanII GRGCYC 2 cut(s) 375, 660
BarI GAAGNNNNNNTAC 2 cut(s) 1034, 1066
BauI CACGAG 1 cut(s) 605
Bbv12I GWGCWC 2 cut(s) 180, 237
BbvCI CCTCAGC 2 cut(s) 383, 575
BbvI GCAGC 6 cut(s) 375, 595, 598, 785, 811, 1096
BccI CCATC 1 cut(s) 138
BceAI ACGGC 5 cut(s) 118, 169, 321, 331, 1053
BciT130I CCWGG 1 cut(s) 227
BcoDI GTCTC 1 cut(s) 805
BfmI CTRYAG 4 cut(s) 241, 1060, 1110, 1121
BfuAI ACCTGC 2 cut(s) 617, 755
BisI GCNGC 7 cut(s) 106, 389, 584, 587, 774, 825, 1110
BlsI GCNGC 7 cut(s) 107, 390, 585, 588, 775, 826, 1111
Bme1390I CCNGG 1 cut(s) 227
Bme18I GGWCC 2 cut(s) 298, 931
BmgBI CACGTC 1 cut(s) 64
BmgT120I GGNCC 6 cut(s) 276, 298, 307, 845, 931, 1066
BmiI GGNNCC 7 cut(s) 172, 287, 300, 374, 541, 745, 1067
BmrFI CCNGG 1 cut(s) 227
BmrI ACTGGG 2 cut(s) 567, 1042
BmsI GCATC 2 cut(s) 153, 388
BmuI ACTGGG 2 cut(s) 567, 1042
BpmI CTGGAG 1 cut(s) 529
Bpu10I CCTNAGC 2 cut(s) 383, 575
BsaBI GATNNNNATC 2 cut(s) 600, 813
BsaHI GRCGYC 1 cut(s) 318
BsaJI CCNNGG 4 cut(s) 303, 376, 934, 1092
Bsc4I CCNNNNNNNGG 4 cut(s) 270, 295, 354, 728
Bse118I RCCGGY 1 cut(s) 391
Bse1I ACTGG 4 cut(s) 562, 733, 1007, 1037
Bse21I CCTNAGG 1 cut(s) 438
Bse3DI GCAATG 1 cut(s) 655
Bse8I GATNNNNATC 2 cut(s) 600, 813
BseBI CCWGG 1 cut(s) 227
BseDI CCNNGG 4 cut(s) 303, 376, 934, 1092
BseJI GATNNNNATC 2 cut(s) 600, 813
BseLI CCNNNNNNNGG 4 cut(s) 270, 295, 354, 728
BseMI GCAATG 1 cut(s) 655
BseMII CTCAG 3 cut(s) 374, 429, 589
BseNI ACTGG 4 cut(s) 562, 733, 1007, 1037
BseRI GAGGAG 4 cut(s) 29, 245, 286, 635
BseSI GKGCMC 1 cut(s) 544
BseX3I CGGCCG 2 cut(s) 345, 393
BseXI GCAGC 6 cut(s) 375, 595, 598, 785, 811, 1096
Bsh1236I CGCG 2 cut(s) 57, 221
Bsh1285I CGRYCG 2 cut(s) 348, 396
BshFI GGCC 6 cut(s) 278, 308, 347, 395, 846, 1068
BshNI GGYRCC 2 cut(s) 285, 539
BsiEI CGRYCG 2 cut(s) 348, 396
BsiHKAI GWGCWC 2 cut(s) 180, 237
BsiSI CCGG 2 cut(s) 344, 392
BsiWI CGTACG 1 cut(s) 216
BslI CCNNNNNNNGG 4 cut(s) 270, 295, 354, 728
BsmAI GTCTC 1 cut(s) 805
BsnI GGCC 6 cut(s) 278, 308, 347, 395, 846, 1068
Bsp1286I GDGCHC 5 cut(s) 180, 237, 375, 544, 660
Bsp143I GATC 9 cut(s) 4, 76, 84, 145, 601, 613, 736, 814, 1005
Bsp19I CCATGG 2 cut(s) 934, 1092
BspACI CCGC 3 cut(s) 105, 408, 498
BspANI GGCC 6 cut(s) 278, 308, 347, 395, 846, 1068
BspCNI CTCAG 3 cut(s) 375, 430, 588
BspFNI CGCG 2 cut(s) 57, 221
BspHI TCATGA 1 cut(s) 660
BspLI GGNNCC 7 cut(s) 172, 287, 300, 374, 541, 745, 1067
BspMAI CTGCAG 2 cut(s) 1064, 1114
BspMI ACCTGC 2 cut(s) 617, 755
BspPI GGATC 5 cut(s) 12, 71, 79, 608, 1013
BspT107I GGYRCC 2 cut(s) 285, 539
BsrBI CCGCTC 1 cut(s) 410
BsrDI GCAATG 1 cut(s) 655
BsrFI RCCGGY 1 cut(s) 391
BsrI ACTGG 4 cut(s) 562, 733, 1007, 1037
BssAI RCCGGY 1 cut(s) 391
BssECI CCNNGG 4 cut(s) 303, 376, 934, 1092
BssMI GATC 9 cut(s) 4, 76, 84, 145, 601, 613, 736, 814, 1005
BssNI GRCGYC 1 cut(s) 318
BssSI CACGAG 1 cut(s) 605
BssT1I CCWWGG 2 cut(s) 934, 1092
Bst2BI CACGAG 1 cut(s) 605
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 3 cut(s) 71, 668, 1105
Bst6I CTCTTC 4 cut(s) 26, 32, 37, 47
BstACI GRCGYC 1 cut(s) 318
BstC8I GCNNGC 4 cut(s) 55, 223, 393, 581
BstDEI CTNAG 3 cut(s) 383, 438, 575
BstDSI CCRYGG 3 cut(s) 303, 934, 1092
BstFNI CGCG 2 cut(s) 57, 221
BstHHI GCGC 2 cut(s) 59, 201
BstKTI GATC 9 cut(s) 7, 79, 87, 148, 604, 616, 739, 817, 1008
BstMAI GTCTC 1 cut(s) 805
BstMBI GATC 9 cut(s) 4, 76, 84, 145, 601, 613, 736, 814, 1005
BstMCI CGRYCG 2 cut(s) 348, 396
BstMWI GCNNNNNNNGC 7 cut(s) 196, 207, 379, 388, 407, 504, 866
BstNI CCWGG 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 225
BstSFI CTRYAG 4 cut(s) 241, 1060, 1110, 1121
BstSLI GKGCMC 1 cut(s) 544
BstUI CGCG 2 cut(s) 57, 221
BstV1I GCAGC 6 cut(s) 375, 595, 598, 785, 811, 1096
BstZI CGGCCG 2 cut(s) 345, 393
Bsu36I CCTNAGG 1 cut(s) 438
BsuRI GGCC 6 cut(s) 278, 308, 347, 395, 846, 1068
BtgI CCRYGG 3 cut(s) 303, 934, 1092
BtgZI GCGATG 1 cut(s) 123
BtrI CACGTC 1 cut(s) 64
BtsIMutI CAGTG 3 cut(s) 673, 726, 799
BveI ACCTGC 2 cut(s) 617, 755
Cac8I GCNNGC 4 cut(s) 55, 223, 393, 581
CciI TCATGA 1 cut(s) 660
CfoI GCGC 2 cut(s) 59, 201
Cfr10I RCCGGY 1 cut(s) 391
Cfr13I GGNCC 6 cut(s) 276, 298, 307, 845, 931, 1066
CseI GACGC 3 cut(s) 307, 647, 951
Csp6I GTAC 3 cut(s) 217, 679, 732
CspCI CAANNNNNGTGG 2 cut(s) 676, 711
CviAII CATG 9 cut(s) 268, 461, 633, 661, 877, 903, 935, 1020, 1093
CviQI GTAC 3 cut(s) 217, 679, 732
DdeI CTNAG 3 cut(s) 383, 438, 575
DpnI GATC 9 cut(s) 6, 78, 86, 147, 603, 615, 738, 816, 1007
DpnII GATC 9 cut(s) 4, 76, 84, 145, 601, 613, 736, 814, 1005
EaeI YGGCCR 2 cut(s) 345, 393
EagI CGGCCG 2 cut(s) 345, 393
Eam1104I CTCTTC 4 cut(s) 26, 32, 37, 47
EarI CTCTTC 4 cut(s) 26, 32, 37, 47
EclXI CGGCCG 2 cut(s) 345, 393
Eco130I CCWWGG 2 cut(s) 934, 1092
Eco24I GRGCYC 2 cut(s) 375, 660
Eco47I GGWCC 2 cut(s) 298, 931
Eco52I CGGCCG 2 cut(s) 345, 393
Eco57I CTGAAG 2 cut(s) 495, 775
Eco81I CCTNAGG 1 cut(s) 438
EcoRI GAATTC 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 225
EcoT14I CCWWGG 2 cut(s) 934, 1092
EcoT38I GRGCYC 2 cut(s) 375, 660
ErhI CCWWGG 2 cut(s) 934, 1092
FaeI CATG 9 cut(s) 271, 464, 636, 664, 880, 906, 938, 1023, 1096
FatI CATG 9 cut(s) 267, 460, 632, 660, 876, 902, 934, 1019, 1092
FauI CCCGC 1 cut(s) 491
FauNDI CATATG 1 cut(s) 886
Fnu4HI GCNGC 7 cut(s) 106, 389, 584, 587, 774, 825, 1110
FriOI GRGCYC 2 cut(s) 375, 660
Fsp4HI GCNGC 7 cut(s) 106, 389, 584, 587, 774, 825, 1110
GlaI GCGC 2 cut(s) 58, 200
GluI GCNGC 7 cut(s) 106, 389, 584, 587, 774, 825, 1110
GsuI CTGGAG 1 cut(s) 529
HaeIII GGCC 6 cut(s) 278, 308, 347, 395, 846, 1068
HapII CCGG 2 cut(s) 344, 392
HgaI GACGC 3 cut(s) 307, 647, 951
HhaI GCGC 2 cut(s) 59, 201
Hin1I GRCGYC 1 cut(s) 318
Hin1II CATG 9 cut(s) 271, 464, 636, 664, 880, 906, 938, 1023, 1096
Hin6I GCGC 2 cut(s) 57, 199
HinP1I GCGC 2 cut(s) 57, 199
HinfI GANTC 5 cut(s) 340, 415, 430, 1047, 1088
HpaII CCGG 2 cut(s) 344, 392
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 5 cut(s) 67, 100, 681, 698, 1087
Hpy188I TCNGA 5 cut(s) 170, 334, 377, 414, 983
Hpy188III TCNNGA 6 cut(s) 149, 259, 355, 605, 617, 661
Hpy8I GTNNAC 5 cut(s) 67, 100, 681, 698, 1087
Hpy99I CGWCG 2 cut(s) 155, 641
HpyAV CCTTC 4 cut(s) 530, 700, 982, 1036
HpyCH4III ACNGT 3 cut(s) 71, 668, 1105
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 6 cut(s) 648, 750, 773, 880, 1062, 1112
HpyF10VI GCNNNNNNNGC 7 cut(s) 196, 207, 379, 388, 407, 504, 866
HpyF3I CTNAG 3 cut(s) 383, 438, 575
HpySE526I ACGT 1 cut(s) 63
Hsp92I GRCGYC 1 cut(s) 318
Hsp92II CATG 9 cut(s) 271, 464, 636, 664, 880, 906, 938, 1023, 1096
HspAI GCGC 2 cut(s) 57, 199
KroI GCCGGC 1 cut(s) 391
KroNI GCCGGC 1 cut(s) 393
Kzo9I GATC 9 cut(s) 4, 76, 84, 145, 601, 613, 736, 814, 1005
LmnI GCTCC 7 cut(s) 170, 232, 378, 415, 464, 527, 562
Lsp1109I GCAGC 6 cut(s) 375, 595, 598, 785, 811, 1096
LweI GCATC 2 cut(s) 153, 388
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 2 cut(s) 319, 469
MalI GATC 9 cut(s) 6, 78, 86, 147, 603, 615, 738, 816, 1007
MbiI CCGCTC 1 cut(s) 410
MboI GATC 9 cut(s) 4, 76, 84, 145, 601, 613, 736, 814, 1005
MboII GAAGA 6 cut(s) 13, 19, 24, 34, 37, 824
MhlI GDGCHC 5 cut(s) 180, 237, 375, 544, 660
MluCI AATT 4 cut(s) 9, 203, 768, 819
MlyI GAGTC 2 cut(s) 334, 1082
MmeI TCCRAC 2 cut(s) 810, 909
MroNI GCCGGC 1 cut(s) 391
MroXI GAANNNNTTC 1 cut(s) 1046
MseI TTAA 2 cut(s) 837, 864
MspI CCGG 2 cut(s) 344, 392
MspR9I CCNGG 1 cut(s) 227
MvaI CCWGG 1 cut(s) 227
MvnI CGCG 2 cut(s) 57, 221
MwoI GCNNNNNNNGC 7 cut(s) 196, 207, 379, 388, 407, 504, 866
NaeI GCCGGC 1 cut(s) 393
NcoI CCATGG 2 cut(s) 934, 1092
NdeI CATATG 1 cut(s) 886
NdeII GATC 9 cut(s) 4, 76, 84, 145, 601, 613, 736, 814, 1005
NgoMIV GCCGGC 1 cut(s) 391
NlaIII CATG 9 cut(s) 271, 464, 636, 664, 880, 906, 938, 1023, 1096
NlaIV GGNNCC 7 cut(s) 172, 287, 300, 374, 541, 745, 1067
NmeAIII GCCGAG 2 cut(s) 199, 373
NmuCI GTSAC 1 cut(s) 319
PagI TCATGA 1 cut(s) 660
PcsI WCGNNNNNNNCGW 1 cut(s) 500
PdiI GCCGGC 1 cut(s) 393
PdmI GAANNNNTTC 1 cut(s) 1046
PfeI GAWTC 3 cut(s) 415, 430, 1047
Pfl23II CGTACG 1 cut(s) 216
PflMI CCANNNNNTGG 2 cut(s) 295, 728
PkrI GCNGC 7 cut(s) 107, 390, 585, 588, 775, 826, 1111
PleI GAGTC 2 cut(s) 334, 1082
PpsI GAGTC 2 cut(s) 334, 1082
PshBI ATTAAT 1 cut(s) 864
Psp6I CCWGG 1 cut(s) 225
PspGI CCWGG 1 cut(s) 225
PspLI CGTACG 1 cut(s) 216
PspN4I GGNNCC 7 cut(s) 172, 287, 300, 374, 541, 745, 1067
PspPI GGNCC 6 cut(s) 276, 298, 307, 845, 931, 1066
PstI CTGCAG 2 cut(s) 1064, 1114
RsaI GTAC 3 cut(s) 218, 680, 733
RsaNI GTAC 3 cut(s) 217, 679, 732
SaqAI TTAA 2 cut(s) 837, 864
SatI GCNGC 7 cut(s) 106, 389, 584, 587, 774, 825, 1110
Sau3AI GATC 9 cut(s) 4, 76, 84, 145, 601, 613, 736, 814, 1005
Sau96I GGNCC 6 cut(s) 276, 298, 307, 845, 931, 1066
SchI GAGTC 2 cut(s) 334, 1082
ScrFI CCNGG 1 cut(s) 227
SduI GDGCHC 5 cut(s) 180, 237, 375, 544, 660
SfaNI GCATC 2 cut(s) 153, 388
SfcI CTRYAG 4 cut(s) 241, 1060, 1110, 1121
SinI GGWCC 2 cut(s) 298, 931
Sse9I AATT 4 cut(s) 9, 203, 768, 819
SsiI CCGC 3 cut(s) 105, 408, 498
StyD4I CCNGG 1 cut(s) 225
StyI CCWWGG 2 cut(s) 934, 1092
TaaI ACNGT 3 cut(s) 71, 668, 1105
TaiI ACGT 1 cut(s) 66
TaqI TCGA 2 cut(s) 7, 249
TasI AATT 4 cut(s) 9, 203, 768, 819
TatI WGTACW 1 cut(s) 678
TauI GCSGC 1 cut(s) 108
TfiI GAWTC 3 cut(s) 415, 430, 1047
Tru1I TTAA 2 cut(s) 837, 864
Tru9I TTAA 2 cut(s) 837, 864
TscAI CASTG 3 cut(s) 673, 733, 799
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 6 cut(s) 388, 583, 586, 773, 824, 1109
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 7 cut(s) 129, 621, 677, 719, 825, 865, 1001
TspGWI ACGGA 2 cut(s) 69, 77
TspRI CASTG 3 cut(s) 673, 733, 799
Van91I CCANNNNNTGG 2 cut(s) 295, 728
VpaK11BI GGWCC 2 cut(s) 298, 931
VspI ATTAAT 1 cut(s) 864
XapI RAATTY 2 cut(s) 9, 203
XcmI CCANNNNNNNNNTGG 1 cut(s) 529
XmnI GAANNNNTTC 1 cut(s) 1046
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.