RLG00000014084

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
46838493 .. 46840670
2178 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014084

Sequence Viewer

Length: 1020 bp
ATGGATCGAATTCTCTCTCTCTTCCTCTTCTCTTCTCTCCTCTTCTTCCTCGCTCGCGCCGACGTGGACGGCGGCGATCCGTTGATCCGTCAAGTCGTGGACGGCGGCGATGATGAAGCCCCTCACCACCACCACCACCACGATCACGAGGGCGACCAGATGCTCGGAGCCGAGCACCACTTCTCGCTGTTCAAGCGCAAATTCGGCAAGTCATACGCGAGCCAGGAGGAGCACGACTACAGGTTCGAGGTGTTCAAGACCAACATGAGGAGGGCCAAGAGGCACCAGCGAATGGACCCCACGGCCCAACACGGCGTCACTCGGTTCTCCGATTTGACTCCGGCCGAGTTCAGGAGAAGCCATTTGGGGCTCCGAGGGCTGAGGCTGCCGGCCGATGCCAACACCGCTCCGATTCTGCCTACCGAGAATCTGCCTGAGGATTTTGATTGGAGAGAGCATGGAGCTGTTACTGAAGTCAAAAATCAGGGTTCGTGTGGGTCGTGCTGGAGTTTTAAGGAGGCAGGTTCATGCGACGCTGGTTGCAATGGTGGGCTCATGAACAGCGCCTTTGAGTACACACTCAAGGCTGGTGGACTTATGAAGGAAAAAGATTATCCATACACTGGTACTGATCGTGGAACCTGCAAGTTTGACAAGACCAAAATTGCAGCCAAAGTTTCCAACTTCAGTGTTGTCTCCCTTGATGAAGATCAAATTGCTGCCAATCTTGTTAAGAATGGCCCTCTTGCAGTGGCTATTAATGCTGTGTTCATGCAAACATATGTTGGTGGAGTGTCATGCCCCTACATTTGCTCAAAGAGGTTGGACCATGGAGTTTTGTTAGTTGGTTATGGTGCAGCTGGCTATTCACCCGTCAGAATGAAGGAGAAGCCATACTGGATCATAAAGAACTCATGGGGCGAGAACTGGGGAGAGAAGGGATTCTACAAAATCTGCAGGGGCCGTAATATCTGTGGCGTGGACTCCATGGTTTCAACTGTTGCTGCAGTTGAGCTATAG

Protein Analysis

340

Amino Acids

37.75

Weight (kDa)

6.94

Isoelectric Point (pI)

27.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 61 - 117 5.4e-17 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 144 - 176 5.8e-10 Papain family cysteine protease
Peptidase_C1 PF00112 177 - 333 1.7e-46 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 512, 650
AccB1I GGYRCC 1 cut(s) 282
AccB7I CCANNNNNTGG 2 cut(s) 292, 623
AccBSI CCGCTC 1 cut(s) 407
AccII CGCG 2 cut(s) 57, 218
AciI CCGC 3 cut(s) 72, 105, 405
AclWI GGATC 4 cut(s) 12, 71, 79, 908
AcoI YGGCCR 2 cut(s) 342, 390
AcsI RAATTY 2 cut(s) 9, 200
AcuI CTGAAG 2 cut(s) 492, 670
AcyI GRCGYC 1 cut(s) 315
AfaI GTAC 2 cut(s) 575, 628
AfiI CCNNNNNNNGG 4 cut(s) 267, 292, 351, 623
AgsI TTSAA 3 cut(s) 193, 256, 996
AjiI CACGTC 1 cut(s) 64
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 3 cut(s) 464, 860, 1015
AluI AGCT 3 cut(s) 464, 860, 1015
Alw21I GWGCWC 2 cut(s) 177, 234
Alw26I GTCTC 1 cut(s) 700
AlwI GGATC 4 cut(s) 12, 71, 79, 908
AoxI GGCC 6 cut(s) 273, 303, 342, 390, 739, 961
ApeKI GCWGC 5 cut(s) 385, 668, 719, 857, 1004
ApoI RAATTY 2 cut(s) 9, 200
ArsI GACNNNNNNTTYG 2 cut(s) 227, 259
AseI ATTAAT 1 cut(s) 759
Asp700I GAANNNNTTC 1 cut(s) 941
AspLEI GCGC 3 cut(s) 59, 198, 566
AspS9I GGNCC 6 cut(s) 273, 295, 304, 740, 826, 961
AsuHPI GGTGA 2 cut(s) 116, 861
AvaII GGWCC 2 cut(s) 295, 826
AxyI CCTNAGG 1 cut(s) 435
BanI GGYRCC 1 cut(s) 282
BanII GRGCYC 2 cut(s) 372, 555
BarI GAAGNNNNNNTAC 2 cut(s) 929, 961
BauI CACGAG 1 cut(s) 146
Bbv12I GWGCWC 2 cut(s) 177, 234
BbvCI CCTCAGC 1 cut(s) 380
BbvI GCAGC 5 cut(s) 372, 680, 706, 869, 991
BceAI ACGGC 5 cut(s) 85, 118, 318, 328, 948
BciT130I CCWGG 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 700
BfmI CTRYAG 4 cut(s) 238, 955, 1005, 1016
BfoI RGCGCY 1 cut(s) 567
BfuAI ACCTGC 2 cut(s) 512, 650
BisI GCNGC 7 cut(s) 73, 106, 386, 669, 720, 858, 1005
BlsI GCNGC 7 cut(s) 74, 107, 387, 670, 721, 859, 1006
Bme1390I CCNGG 1 cut(s) 224
Bme18I GGWCC 2 cut(s) 295, 826
BmgBI CACGTC 1 cut(s) 64
BmgT120I GGNCC 6 cut(s) 273, 295, 304, 740, 826, 961
BmiI GGNNCC 6 cut(s) 169, 284, 297, 371, 640, 962
BmrFI CCNGG 1 cut(s) 224
BmrI ACTGGG 1 cut(s) 937
BmsI GCATC 2 cut(s) 150, 385
BmuI ACTGGG 1 cut(s) 937
BpmI CTGGAG 1 cut(s) 526
Bpu10I CCTNAGC 1 cut(s) 380
BpuEI CTTGAG 1 cut(s) 566
BsaBI GATNNNNATC 1 cut(s) 708
BsaHI GRCGYC 1 cut(s) 315
BsaJI CCNNGG 4 cut(s) 300, 373, 829, 987
Bsc4I CCNNNNNNNGG 4 cut(s) 267, 292, 351, 623
Bse118I RCCGGY 1 cut(s) 388
Bse1I ACTGG 3 cut(s) 628, 902, 932
Bse21I CCTNAGG 1 cut(s) 435
Bse3DI GCAATG 1 cut(s) 550
Bse8I GATNNNNATC 1 cut(s) 708
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 4 cut(s) 300, 373, 829, 987
BseJI GATNNNNATC 1 cut(s) 708
BseLI CCNNNNNNNGG 4 cut(s) 267, 292, 351, 623
BseMI GCAATG 1 cut(s) 550
BseMII CTCAG 2 cut(s) 371, 426
BseNI ACTGG 3 cut(s) 628, 902, 932
BseRI GAGGAG 3 cut(s) 29, 242, 283
BseX3I CGGCCG 2 cut(s) 342, 390
BseXI GCAGC 5 cut(s) 372, 680, 706, 869, 991
BsgI GTGCAG 1 cut(s) 876
Bsh1236I CGCG 2 cut(s) 57, 218
Bsh1285I CGRYCG 2 cut(s) 345, 393
BshFI GGCC 6 cut(s) 275, 305, 344, 392, 741, 963
BshNI GGYRCC 1 cut(s) 282
BsiEI CGRYCG 2 cut(s) 345, 393
BsiHKAI GWGCWC 2 cut(s) 177, 234
BsiSI CCGG 2 cut(s) 341, 389
BslI CCNNNNNNNGG 4 cut(s) 267, 292, 351, 623
BsmAI GTCTC 1 cut(s) 700
BsnI GGCC 6 cut(s) 275, 305, 344, 392, 741, 963
Bsp1286I GDGCHC 4 cut(s) 177, 234, 372, 555
Bsp143I GATC 7 cut(s) 4, 76, 84, 142, 631, 709, 900
Bsp19I CCATGG 2 cut(s) 829, 987
BspACI CCGC 3 cut(s) 72, 105, 405
BspANI GGCC 6 cut(s) 275, 305, 344, 392, 741, 963
BspCNI CTCAG 2 cut(s) 372, 427
BspFNI CGCG 2 cut(s) 57, 218
BspHI TCATGA 1 cut(s) 555
BspLI GGNNCC 6 cut(s) 169, 284, 297, 371, 640, 962
BspMAI CTGCAG 2 cut(s) 959, 1009
BspMI ACCTGC 2 cut(s) 512, 650
BspPI GGATC 4 cut(s) 12, 71, 79, 908
BspT107I GGYRCC 1 cut(s) 282
BsrBI CCGCTC 1 cut(s) 407
BsrDI GCAATG 1 cut(s) 550
BsrFI RCCGGY 1 cut(s) 388
BsrI ACTGG 3 cut(s) 628, 902, 932
BssAI RCCGGY 1 cut(s) 388
BssECI CCNNGG 4 cut(s) 300, 373, 829, 987
BssMI GATC 7 cut(s) 4, 76, 84, 142, 631, 709, 900
BssNI GRCGYC 1 cut(s) 315
BssSI CACGAG 1 cut(s) 146
BssT1I CCWWGG 2 cut(s) 829, 987
Bst2BI CACGAG 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 1000
Bst6I CTCTTC 4 cut(s) 26, 32, 37, 47
BstACI GRCGYC 1 cut(s) 315
BstC8I GCNNGC 4 cut(s) 55, 220, 390, 862
BstDEI CTNAG 2 cut(s) 380, 435
BstDSI CCRYGG 3 cut(s) 300, 829, 987
BstFNI CGCG 2 cut(s) 57, 218
BstH2I RGCGCY 1 cut(s) 567
BstHHI GCGC 3 cut(s) 59, 198, 566
BstKTI GATC 7 cut(s) 7, 79, 87, 145, 634, 712, 903
BstMAI GTCTC 1 cut(s) 700
BstMBI GATC 7 cut(s) 4, 76, 84, 142, 631, 709, 900
BstMCI CGRYCG 2 cut(s) 345, 393
BstMWI GCNNNNNNNGC 6 cut(s) 193, 204, 376, 385, 404, 761
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 222
BstSFI CTRYAG 4 cut(s) 238, 955, 1005, 1016
BstUI CGCG 2 cut(s) 57, 218
BstV1I GCAGC 5 cut(s) 372, 680, 706, 869, 991
BstZI CGGCCG 2 cut(s) 342, 390
Bsu36I CCTNAGG 1 cut(s) 435
BsuRI GGCC 6 cut(s) 275, 305, 344, 392, 741, 963
BtgI CCRYGG 3 cut(s) 300, 829, 987
BtgZI GCGATG 1 cut(s) 123
BtrI CACGTC 1 cut(s) 64
BtsI GCAGTG 1 cut(s) 756
BtsIMutI CAGTG 3 cut(s) 621, 694, 756
BveI ACCTGC 2 cut(s) 512, 650
Cac8I GCNNGC 4 cut(s) 55, 220, 390, 862
CciI TCATGA 1 cut(s) 555
CfoI GCGC 3 cut(s) 59, 198, 566
Cfr10I RCCGGY 1 cut(s) 388
Cfr13I GGNCC 6 cut(s) 273, 295, 304, 740, 826, 961
CseI GACGC 2 cut(s) 304, 542
Csp6I GTAC 2 cut(s) 574, 627
CspCI CAANNNNNGTGG 2 cut(s) 571, 606
CviAII CATG 9 cut(s) 265, 458, 528, 556, 772, 798, 830, 915, 988
CviQI GTAC 2 cut(s) 574, 627
DdeI CTNAG 2 cut(s) 380, 435
DpnI GATC 7 cut(s) 6, 78, 86, 144, 633, 711, 902
DpnII GATC 7 cut(s) 4, 76, 84, 142, 631, 709, 900
EaeI YGGCCR 2 cut(s) 342, 390
EagI CGGCCG 2 cut(s) 342, 390
Eam1104I CTCTTC 4 cut(s) 26, 32, 37, 47
EarI CTCTTC 4 cut(s) 26, 32, 37, 47
EclXI CGGCCG 2 cut(s) 342, 390
Eco130I CCWWGG 2 cut(s) 829, 987
Eco24I GRGCYC 2 cut(s) 372, 555
Eco47I GGWCC 2 cut(s) 295, 826
Eco52I CGGCCG 2 cut(s) 342, 390
Eco57I CTGAAG 2 cut(s) 492, 670
Eco81I CCTNAGG 1 cut(s) 435
EcoRI GAATTC 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 222
EcoT14I CCWWGG 2 cut(s) 829, 987
EcoT38I GRGCYC 2 cut(s) 372, 555
ErhI CCWWGG 2 cut(s) 829, 987
FaeI CATG 9 cut(s) 268, 461, 531, 559, 775, 801, 833, 918, 991
FatI CATG 9 cut(s) 264, 457, 527, 555, 771, 797, 829, 914, 987
FauNDI CATATG 1 cut(s) 781
Fnu4HI GCNGC 7 cut(s) 73, 106, 386, 669, 720, 858, 1005
FriOI GRGCYC 2 cut(s) 372, 555
Fsp4HI GCNGC 7 cut(s) 73, 106, 386, 669, 720, 858, 1005
GlaI GCGC 3 cut(s) 58, 197, 565
GluI GCNGC 7 cut(s) 73, 106, 386, 669, 720, 858, 1005
GsuI CTGGAG 1 cut(s) 526
HaeII RGCGCY 1 cut(s) 567
HaeIII GGCC 6 cut(s) 275, 305, 344, 392, 741, 963
HapII CCGG 2 cut(s) 341, 389
HgaI GACGC 2 cut(s) 304, 542
HhaI GCGC 3 cut(s) 59, 198, 566
Hin1I GRCGYC 1 cut(s) 315
Hin1II CATG 9 cut(s) 268, 461, 531, 559, 775, 801, 833, 918, 991
Hin6I GCGC 3 cut(s) 57, 196, 564
HinP1I GCGC 3 cut(s) 57, 196, 564
HinfI GANTC 5 cut(s) 337, 412, 427, 942, 983
HpaII CCGG 2 cut(s) 341, 389
HphI GGTGA 2 cut(s) 116, 861
Hpy166II GTNNAC 5 cut(s) 67, 100, 576, 593, 982
Hpy188I TCNGA 5 cut(s) 167, 331, 374, 411, 878
Hpy188III TCNNGA 4 cut(s) 146, 256, 352, 556
Hpy8I GTNNAC 5 cut(s) 67, 100, 576, 593, 982
Hpy99I CGWCG 2 cut(s) 65, 536
HpyAV CCTTC 3 cut(s) 595, 877, 931
HpyCH4III ACNGT 1 cut(s) 1000
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 8 cut(s) 543, 645, 668, 749, 775, 857, 957, 1007
HpyF10VI GCNNNNNNNGC 6 cut(s) 193, 204, 376, 385, 404, 761
HpyF3I CTNAG 2 cut(s) 380, 435
HpySE526I ACGT 1 cut(s) 63
Hsp92I GRCGYC 1 cut(s) 315
Hsp92II CATG 9 cut(s) 268, 461, 531, 559, 775, 801, 833, 918, 991
HspAI GCGC 3 cut(s) 57, 196, 564
KroI GCCGGC 1 cut(s) 388
KroNI GCCGGC 1 cut(s) 390
Kzo9I GATC 7 cut(s) 4, 76, 84, 142, 631, 709, 900
LmnI GCTCC 5 cut(s) 167, 229, 375, 412, 461
Lsp1109I GCAGC 5 cut(s) 372, 680, 706, 869, 991
LweI GCATC 2 cut(s) 150, 385
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 2 cut(s) 316, 466
MalI GATC 7 cut(s) 6, 78, 86, 144, 633, 711, 902
MbiI CCGCTC 1 cut(s) 407
MboI GATC 7 cut(s) 4, 76, 84, 142, 631, 709, 900
MboII GAAGA 6 cut(s) 13, 19, 24, 34, 37, 719
MhlI GDGCHC 4 cut(s) 177, 234, 372, 555
MluCI AATT 4 cut(s) 9, 200, 663, 714
MlyI GAGTC 2 cut(s) 331, 977
MmeI TCCRAC 2 cut(s) 705, 804
MroNI GCCGGC 1 cut(s) 388
MroXI GAANNNNTTC 1 cut(s) 941
MseI TTAA 3 cut(s) 513, 732, 759
MspA1I CMGCKG 1 cut(s) 860
MspI CCGG 2 cut(s) 341, 389
MspR9I CCNGG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 224
MvnI CGCG 2 cut(s) 57, 218
MwoI GCNNNNNNNGC 6 cut(s) 193, 204, 376, 385, 404, 761
NaeI GCCGGC 1 cut(s) 390
NcoI CCATGG 2 cut(s) 829, 987
NdeI CATATG 1 cut(s) 781
NdeII GATC 7 cut(s) 4, 76, 84, 142, 631, 709, 900
NgoMIV GCCGGC 1 cut(s) 388
NlaIII CATG 9 cut(s) 268, 461, 531, 559, 775, 801, 833, 918, 991
NlaIV GGNNCC 6 cut(s) 169, 284, 297, 371, 640, 962
NmeAIII GCCGAG 2 cut(s) 196, 370
NmuCI GTSAC 1 cut(s) 316
PagI TCATGA 1 cut(s) 555
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 497
PdiI GCCGGC 1 cut(s) 390
PdmI GAANNNNTTC 1 cut(s) 941
PfeI GAWTC 3 cut(s) 412, 427, 942
PflMI CCANNNNNTGG 2 cut(s) 292, 623
PkrI GCNGC 7 cut(s) 74, 107, 387, 670, 721, 859, 1006
PleI GAGTC 2 cut(s) 331, 977
PpsI GAGTC 2 cut(s) 331, 977
PshBI ATTAAT 1 cut(s) 759
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 6 cut(s) 169, 284, 297, 371, 640, 962
PspPI GGNCC 6 cut(s) 273, 295, 304, 740, 826, 961
PstI CTGCAG 2 cut(s) 959, 1009
PvuII CAGCTG 1 cut(s) 860
RsaI GTAC 2 cut(s) 575, 628
RsaNI GTAC 2 cut(s) 574, 627
SaqAI TTAA 3 cut(s) 513, 732, 759
SatI GCNGC 7 cut(s) 73, 106, 386, 669, 720, 858, 1005
Sau3AI GATC 7 cut(s) 4, 76, 84, 142, 631, 709, 900
Sau96I GGNCC 6 cut(s) 273, 295, 304, 740, 826, 961
SchI GAGTC 2 cut(s) 331, 977
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 4 cut(s) 177, 234, 372, 555
SetI ASST 9 cut(s) 66, 245, 252, 466, 526, 644, 824, 862, 1017
SfaNI GCATC 2 cut(s) 150, 385
SfcI CTRYAG 4 cut(s) 238, 955, 1005, 1016
SinI GGWCC 2 cut(s) 295, 826
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
Sse9I AATT 4 cut(s) 9, 200, 663, 714
SsiI CCGC 3 cut(s) 72, 105, 405
StyD4I CCNGG 1 cut(s) 222
StyI CCWWGG 2 cut(s) 829, 987
TaaI ACNGT 1 cut(s) 1000
TaiI ACGT 1 cut(s) 66
TaqI TCGA 2 cut(s) 7, 246
TasI AATT 4 cut(s) 9, 200, 663, 714
TatI WGTACW 1 cut(s) 573
TauI GCSGC 2 cut(s) 75, 108
TfiI GAWTC 3 cut(s) 412, 427, 942
Tru1I TTAA 3 cut(s) 513, 732, 759
Tru9I TTAA 3 cut(s) 513, 732, 759
TscAI CASTG 3 cut(s) 628, 694, 756
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 5 cut(s) 385, 668, 719, 857, 1004
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 7 cut(s) 129, 516, 572, 614, 720, 760, 896
TspGWI ACGGA 2 cut(s) 69, 77
TspRI CASTG 3 cut(s) 628, 694, 756
Van91I CCANNNNNTGG 2 cut(s) 292, 623
VpaK11BI GGWCC 2 cut(s) 295, 826
VspI ATTAAT 1 cut(s) 759
XapI RAATTY 2 cut(s) 9, 200
XmnI GAANNNNTTC 1 cut(s) 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.